Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 2.2e-54 215.3 105 100.0
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 1.2e-52 209.5 105 95.2
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 1.6e-52 209.1 105 96.2
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 2.7e-52 208.4 105 95.2
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 2.7e-52 208.4 105 95.2
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 4.6e-52 207.6 105 94.3
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 6.1e-52 207.2 105 95.2
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 1.3e-51 206.1 105 93.3
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 1.8e-51 205.7 105 94.3
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 2.3e-51 205.3 105 94.3
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 3.0e-51 204.9 105 94.3
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 3.9e-51 204.5 105 94.3
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 5.1e-51 204.1 105 91.4
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 5.1e-51 204.1 105 92.4
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 6.7e-51 203.8 105 93.3
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 8.7e-51 203.4 105 93.3
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 1.1e-50 203.0 105 93.3
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.5e-50 202.6 105 93.3
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 1.5e-50 202.6 103 94.2
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 1.9e-50 202.2 105 91.4
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 2.5e-50 201.8 105 90.5
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 2.5e-50 201.8 105 92.4
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 3.3e-50 201.4 105 92.4
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 4.3e-50 201.1 105 92.4
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 4.3e-50 201.1 105 92.4
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 4.3e-50 201.1 105 91.4
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 4.3e-50 201.1 105 91.4
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 5.7e-50 200.7 105 91.4
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 5.7e-50 200.7 105 91.4
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 5.7e-50 200.7 105 92.4
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 5.7e-50 200.7 105 91.4
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 7.4e-50 200.3 105 91.4
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 7.4e-50 200.3 105 91.4
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 7.4e-50 200.3 105 91.4
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 9.7e-50 199.9 105 91.4
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 9.7e-50 199.9 105 90.5
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 9.7e-50 199.9 105 92.4
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 9.7e-50 199.9 105 92.4
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 9.7e-50 199.9 105 92.4
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 1.3e-49 199.5 105 91.4
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 1.3e-49 199.5 105 90.5
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 1.6e-49 199.1 105 90.5
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 1.6e-49 199.1 105 91.4
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 2.2e-49 198.7 99 96.0
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 2.8e-49 198.4 105 90.5
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 2.8e-49 198.4 104 90.4
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 3.7e-49 198.0 105 91.4
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 6.3e-49 197.2 105 89.5
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 6.3e-49 197.2 105 89.5
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 6.3e-49 197.2 105 89.5
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.1e-48 196.4 100 94.0
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 1.1e-48 196.4 105 87.6
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 1.1e-48 196.4 105 88.6
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 1.4e-48 196.1 105 89.5
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 1.4e-48 196.1 105 88.6
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 1.4e-48 196.1 105 88.6
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 1.8e-48 195.7 105 86.7
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.8e-48 195.7 105 89.5
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.8e-48 195.7 105 89.5
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 1.8e-48 195.7 105 87.6
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 2.4e-48 195.3 103 89.3
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 3.1e-48 194.9 105 88.6
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 3.1e-48 194.9 105 89.5
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 6.9e-48 193.7 99 92.9
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 6.9e-48 193.7 105 87.6
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 9.0e-48 193.4 105 86.7
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 9.0e-48 193.4 101 90.1
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 1.2e-47 193.0 105 87.6
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 2.0e-47 192.2 105 86.7
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 2.6e-47 191.8 105 86.7
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 2.6e-47 191.8 105 85.7
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 3.4e-47 191.4 105 86.7
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 3.4e-47 191.4 105 86.7
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 4.5e-47 191.0 105 85.7
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 5.9e-47 190.7 99 91.9
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 5.9e-47 190.7 105 85.7
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 5.9e-47 190.7 99 91.9
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 5.9e-47 190.7 105 85.7
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 7.7e-47 190.3 105 85.7
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 7.7e-47 190.3 105 85.7
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 7.7e-47 190.3 105 85.7
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 7.7e-47 190.3 99 91.9
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 1.3e-46 189.5 105 85.7
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 1.7e-46 189.1 99 90.9
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 2.9e-46 188.3 105 84.8
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 2.9e-46 188.3 99 92.9
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 3.8e-46 188.0 99 90.9
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 3.8e-46 188.0 105 84.8
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 1.1e-45 186.4 105 88.6
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 3.2e-45 184.9 105 84.8
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 9.4e-45 183.3 95 93.7
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 1.2e-44 183.0 120 77.5
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 2.1e-44 182.2 105 84.8
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 4.6e-44 181.0 98 87.8
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 6.1e-44 180.6 105 81.9
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 7.9e-44 180.3 100 84.0
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 7.9e-44 180.3 100 84.0
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 7.9e-44 180.3 100 84.0
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 7.9e-44 180.3 100 87.0
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 1.0e-43 179.9 100 84.0
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 1.0e-43 179.9 100 84.0
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 1.0e-43 179.9 100 84.0
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 2.3e-43 178.7 100 83.0
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 2.3e-43 178.7 100 83.0
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 3.9e-43 177.9 105 84.8
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 5.1e-43 177.6 95 89.5
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 5.7e-42 174.1 93 88.2
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 4.8e-41 171.0 92 91.3
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 1.2e-39 166.4 95 83.2
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.6e-39 165.2 86 91.9
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 1.7e-38 162.5 92 83.7
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 9.4e-37 156.8 91 76.9
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 1.8e-35 152.5 103 66.0
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 6.7e-35 150.6 105 69.5
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 6.7e-35 150.6 104 68.3
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 1.5e-34 149.4 78 92.3
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 2.6e-34 148.7 78 93.6
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 3.3e-34 148.3 98 67.3
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 1.7e-33 146.0 79 89.9
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 1.1e-32 143.3 78 87.2
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 1.1e-32 143.3 78 87.2
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.8e-32 142.5 100 69.0
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 5.3e-32 141.0 92 79.3
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 1.6e-31 139.4 78 84.6
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 3.5e-31 138.3 78 84.6
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 1.0e-30 136.7 78 84.6
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 1.2e-28 129.8 108 65.7
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 1.6e-28 129.4 66 90.9
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 4.1e-24 114.8 65 86.2
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 8.8e-19 97.1 49 89.8
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 1.1e-13 80.1 49 69.4
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 3.6e-12 75.1 52 65.4


User provided reference genes

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