Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 0.0e+00 1583.5 844 100.0
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.4e-303 1046.2 832 68.8
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 1.3e-301 1039.6 849 69.8
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 8.3e-301 1036.9 842 67.5
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 9.1e-300 1033.5 830 68.1
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 3.2e-297 1025.0 843 67.1
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 8.0e-296 1020.4 843 68.4
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 3.1e-292 1008.4 848 67.6
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 2.3e-290 1002.3 835 66.5
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 1.5e-289 999.6 847 65.9
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 2.5e-289 998.8 843 65.4
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 3.3e-289 998.4 847 66.4
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 6.1e-288 994.2 843 64.9
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.0e-287 993.4 858 65.9
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 2.6e-286 988.8 847 65.2
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 6.3e-285 984.2 843 65.1
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 8.3e-285 983.8 843 64.8
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 1.1e-284 983.4 853 64.7
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 3.2e-284 981.9 836 63.3
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 9.2e-284 980.3 832 64.2
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 2.0e-283 979.2 846 64.2
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 1.1e-281 973.4 837 64.2
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 1.9e-281 972.6 841 65.4
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 1.6e-280 969.5 832 64.9
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 2.8e-280 968.8 839 62.5
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 3.6e-280 968.4 836 63.4
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 2.3e-279 965.7 832 64.5
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 1.9e-276 956.1 834 62.6
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 2.0e-275 952.6 845 62.5
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.7e-275 952.2 839 62.9
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 1.0e-274 950.3 839 64.0
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 6.6e-274 947.6 846 61.9
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 8.6e-274 947.2 848 61.3
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 1.1e-273 946.8 843 61.3
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.1e-273 946.8 834 62.5
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.1e-273 946.8 829 62.6
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.5e-273 946.4 845 61.7
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 2.5e-273 945.7 842 63.2
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 3.3e-273 945.3 839 62.2
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 3.3e-273 945.3 835 62.3
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 5.6e-273 944.5 845 62.2
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 7.3e-273 944.1 839 63.2
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 1.2e-272 943.3 835 62.0
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 2.1e-272 942.6 840 61.9
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 2.1e-272 942.6 841 62.1
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 2.1e-272 942.6 849 61.4
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 3.6e-272 941.8 836 61.8
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 6.8e-271 937.6 840 61.5
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 6.8e-271 937.6 844 63.4
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 2.6e-270 935.6 834 62.1
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.2e-269 932.6 837 62.6
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 1.6e-267 926.4 830 61.7
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.1e-267 926.0 832 61.3
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.7e-266 922.9 842 60.9
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 2.3e-266 922.5 846 59.5
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 3.9e-266 921.8 829 62.1
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 5.1e-266 921.4 837 62.1
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 8.6e-266 920.6 933 56.6
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 4.7e-264 914.8 829 61.4
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 3.1e-263 912.1 863 59.7
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 5.2e-263 911.4 839 60.7
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 2.2e-261 906.0 835 61.2
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 3.2e-260 902.1 829 60.6
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 1.2e-259 900.2 842 59.3
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 2.1e-259 899.4 837 60.9
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 7.8e-259 897.5 842 59.9
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 5.1e-258 894.8 842 60.5
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 2.8e-256 889.0 872 57.9
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 1.4e-255 886.7 834 61.4
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 1.8e-255 886.3 842 60.6
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 8.4e-253 877.5 846 60.4
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 3.2e-252 875.5 835 60.0
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 3.2e-252 875.5 841 60.0
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 2.7e-251 872.5 834 57.7
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 4.6e-251 871.7 865 56.6
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 5.1e-250 868.2 830 59.4
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 8.7e-250 867.5 848 57.4
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 4.9e-245 851.7 793 60.4
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 3.0e-242 842.4 886 56.9
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 6.6e-242 841.3 829 58.6
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 1.6e-240 836.6 833 59.9
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 3.6e-240 835.5 819 57.8
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 3.6e-240 835.5 819 57.8
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 2.0e-238 829.7 819 57.6
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 8.4e-237 824.3 844 54.3
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 1.2e-235 820.5 849 54.8
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 6.0e-235 818.1 813 55.8
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 3.3e-233 812.4 809 57.2
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 3.3e-233 812.4 809 57.2
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 4.3e-233 812.0 840 55.8
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 9.0e-231 804.3 856 54.4
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 4.5e-230 802.0 846 54.1
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 2.9e-229 799.3 849 55.4
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 5.5e-228 795.0 840 55.1
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 2.2e-216 756.5 816 53.6
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 2.3e-210 736.5 844 50.7
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 7.4e-209 731.5 685 59.0
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 1.4e-207 727.2 677 59.5
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 2.3e-202 709.9 846 50.5
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.9e-188 663.7 605 62.0
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 3.2e-188 662.9 630 57.9
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 7.2e-180 635.2 559 61.0
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 4.3e-172 609.4 608 58.4
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 7.8e-166 588.6 877 42.4
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 7.1e-151 538.9 863 40.1
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 6.6e-149 532.3 847 42.0
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.9e-143 514.2 489 60.7
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 8.6e-141 505.4 452 61.1
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 8.6e-141 505.4 831 40.7
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 5.4e-127 459.5 446 60.3
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 1.6e-126 458.0 385 65.2
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.6e-126 456.4 389 64.0
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.9e-114 416.0 311 70.1
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 4.9e-112 409.8 445 53.5
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 5.7e-108 396.4 940 31.8
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 3.0e-93 347.4 323 62.2
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 6.7e-93 346.3 447 47.4
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 1.1e-92 345.5 291 63.2
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 3.4e-89 334.0 288 69.8
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 2.9e-80 304.3 246 68.7
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 3.2e-79 300.8 235 69.4
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.6e-78 298.5 333 50.2
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 1.7e-75 288.5 200 74.5
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 3.5e-73 280.8 226 62.8
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 2.0e-68 265.0 931 28.1
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 1.5e-63 248.8 271 59.0
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 6.6e-56 223.4 195 61.0
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 2.1e-54 218.4 214 53.3
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 8.0e-54 216.5 153 69.3
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 2.6e-44 184.9 214 50.9
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 6.4e-43 180.3 182 56.0
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.4e-43 180.3 146 66.4
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.6e-41 174.1 155 60.6
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 5.6e-39 167.2 156 59.0
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.7e-35 154.5 108 73.1
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 9.2e-34 149.8 751 27.3
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 9.5e-31 139.8 171 50.9
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 2.1e-30 138.7 528 25.2
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 2.8e-30 138.3 279 40.9
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 8.9e-29 133.3 281 39.1
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 5.8e-28 130.6 170 45.3
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 9.9e-28 129.8 288 38.2
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 4.9e-27 127.5 73 75.3
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.4e-26 125.9 712 24.3
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 9.2e-26 123.2 105 58.1
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 7.3e-23 113.6 105 54.3
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 1.4e-21 109.4 97 61.9
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 3.2e-18 98.2 204 41.2
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 7.8e-17 93.6 75 65.3
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 1.7e-16 92.4 204 44.1
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 4.3e-15 87.8 207 42.5
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.6e-15 87.4 52 76.9
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.5e-12 79.3 73 54.8
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.6e-12 78.6 131 45.8
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 1.3e-11 76.3 54 61.1
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 2.4e-10 72.0 93 48.4
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 1.6e-09 69.3 72 50.0
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 2.1e-06 58.9 58 48.3
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 4.8e-06 57.8 60 48.3
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 4.8e-06 57.8 60 48.3


User provided reference genes

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