Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 0.0e+00 1431.8 722 100.0
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 0.0e+00 1191.4 722 83.4
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 0.0e+00 1174.8 720 82.2
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 0.0e+00 1124.4 702 81.8
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 0.0e+00 1122.8 717 79.6
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 0.0e+00 1115.1 722 78.1
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 0.0e+00 1110.9 724 76.9
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 0.0e+00 1110.1 723 79.3
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 0.0e+00 1107.0 723 77.2
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 0.0e+00 1107.0 706 79.3
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 0.0e+00 1104.4 728 77.9
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 0.0e+00 1103.6 707 78.9
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 0.0e+00 1101.3 728 77.5
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 0.0e+00 1099.7 708 78.8
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 0.0e+00 1099.0 721 77.1
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 0.0e+00 1097.8 706 78.5
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 0.0e+00 1097.4 723 77.0
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 0.0e+00 1092.4 706 77.9
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 0.0e+00 1087.4 755 74.7
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 0.0e+00 1085.5 709 76.7
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 0.0e+00 1085.1 728 75.4
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 0.0e+00 1080.9 717 74.6
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 0.0e+00 1079.3 723 75.9
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.5e-311 1072.4 721 77.0
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 2.0e-311 1072.0 721 76.1
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 1.7e-310 1068.9 721 75.0
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 3.8e-310 1067.8 724 75.3
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 1.4e-309 1065.8 720 74.6
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 1.9e-309 1065.4 724 75.0
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.4e-309 1065.1 710 75.9
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 3.2e-309 1064.7 710 75.9
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 3.5e-308 1061.2 718 74.5
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 4.6e-308 1060.8 702 76.4
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 2.3e-307 1058.5 746 73.6
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 3.0e-307 1058.1 735 74.1
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.9e-306 1055.4 721 75.6
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 7.3e-306 1053.5 682 79.2
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 1.2e-305 1052.7 801 69.3
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 4.7e-305 1050.8 725 73.7
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 6.2e-305 1050.4 719 75.5
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 5.2e-304 1047.3 720 73.6
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.7e-302 1042.3 722 74.5
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 4.9e-302 1040.8 710 73.8
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 6.4e-302 1040.4 721 73.2
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 8.3e-302 1040.0 703 74.3
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 2.4e-301 1038.5 749 72.8
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 2.4e-301 1038.5 724 72.7
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 3.2e-301 1038.1 704 75.9
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 7.8e-300 1033.5 727 71.9
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 4.3e-298 1027.7 711 72.7
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 2.1e-297 1025.4 714 72.7
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 2.8e-297 1025.0 704 73.9
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 8.1e-297 1023.5 722 71.5
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 7.6e-295 1016.9 720 71.4
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 3.8e-294 1014.6 712 71.2
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 3.8e-294 1014.6 702 73.1
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 2.4e-293 1011.9 708 73.9
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 4.1e-293 1011.1 702 72.6
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 5.4e-293 1010.7 703 71.8
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 7.1e-293 1010.4 703 72.5
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 9.2e-293 1010.0 723 71.1
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 1.6e-292 1009.2 702 72.8
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 7.8e-292 1006.9 716 71.4
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 1.3e-291 1006.1 702 72.5
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 3.0e-291 1005.0 681 74.9
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 1.5e-290 1002.7 703 71.8
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 1.5e-290 1002.7 712 71.5
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 2.8e-289 998.4 706 70.7
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 1.8e-288 995.7 712 70.8
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 6.9e-288 993.8 721 69.5
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.3e-286 989.6 721 70.0
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 6.4e-286 987.3 712 69.4
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 2.4e-285 985.3 716 69.7
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 4.6e-284 981.1 720 71.1
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 1.7e-283 979.2 711 69.6
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 6.6e-283 977.2 714 68.9
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 1.9e-282 975.7 733 68.1
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 2.5e-282 975.3 750 68.1
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 4.8e-281 971.1 679 73.3
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 1.4e-280 969.5 704 70.2
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.8e-280 969.1 720 68.1
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 7.6e-279 963.8 720 69.9
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 2.2e-278 962.2 704 69.2
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 4.9e-278 961.1 725 68.1
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 7.1e-277 957.2 654 75.8
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 2.1e-276 955.7 727 67.8
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 3.5e-276 954.9 725 67.6
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 6.0e-276 954.1 725 67.6
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 6.0e-276 954.1 724 67.8
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 1.3e-275 953.0 725 67.6
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 1.3e-275 953.0 724 66.7
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.3e-275 952.2 721 66.3
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 1.1e-274 949.9 724 67.1
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 4.3e-274 948.0 706 68.4
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 1.4e-272 943.0 725 68.0
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 1.4e-272 943.0 694 70.0
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 2.4e-272 942.2 730 66.6
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 5.3e-272 941.0 723 67.8
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 1.2e-271 939.9 702 68.4
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 1.2e-271 939.9 717 67.6
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 1.5e-271 939.5 670 74.0
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 4.5e-271 937.9 705 68.1
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 5.8e-271 937.6 727 66.3
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 8.7e-267 923.7 723 66.1
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.5e-266 922.2 721 65.5
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 4.3e-266 921.4 638 74.1
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 5.6e-266 921.0 708 67.4
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 5.3e-264 914.4 704 66.1
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 1.2e-263 913.3 746 64.6
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 3.0e-259 898.7 708 65.5
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 1.1e-256 890.2 717 66.5
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 1.4e-248 863.2 728 63.3
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 1.0e-246 857.1 732 63.0
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 1.1e-245 853.6 613 73.6
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 5.3e-240 834.7 570 75.6
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 7.0e-240 834.3 704 63.9
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 1.5e-239 833.2 711 60.9
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 5.5e-237 824.7 720 59.7
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.7e-233 812.0 551 76.8
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 1.8e-227 793.1 650 65.8
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.7e-227 791.2 612 68.8
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 2.6e-226 789.3 727 59.8
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 1.4e-224 783.5 616 67.5
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 4.4e-218 761.9 578 69.6
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.2e-217 759.6 565 70.8
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 1.2e-212 743.8 731 55.0
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 3.4e-210 735.7 501 74.3
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 7.8e-207 724.5 657 58.3
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 1.1e-189 667.5 698 54.4
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 4.9e-185 652.1 706 50.4
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.1e-165 587.8 604 55.0
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 3.7e-156 556.2 890 40.3
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 3.8e-153 546.2 334 80.8
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 6.1e-135 485.7 445 60.7
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.6e-119 434.5 261 82.8
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.8e-116 423.7 261 81.6
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 1.4e-99 368.2 367 53.7
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 1.8e-91 341.3 322 56.8
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 1.1e-83 315.5 520 38.7
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 1.4e-67 261.9 550 36.5
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 2.6e-61 241.1 288 48.6
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.5e-56 224.6 185 62.7
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 3.6e-55 220.7 123 84.6
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 5.5e-43 180.3 303 38.9
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 3.5e-42 177.6 122 74.6
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 4.6e-42 177.2 138 68.1
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 3.0e-41 174.5 323 38.1
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 1.1e-35 156.0 179 48.6
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 6.0e-34 150.2 124 60.5
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 1.8e-33 148.7 121 62.0
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 1.1e-30 139.4 162 49.4
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 7.2e-27 126.7 121 60.3
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 1.6e-23 115.5 323 31.3
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 1.1e-19 102.8 90 57.8
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 1.2e-18 99.4 85 54.1
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 2.7e-18 98.2 52 84.6
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.8e-17 93.2 53 75.5
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.8e-17 93.2 53 75.5
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 6.9e-14 83.6 62 58.1
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 4.5e-13 80.9 58 65.5
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.9e-11 75.5 59 66.1
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 3.0e-09 68.2 37 86.5
MBI11_g20784_MAGBIO Magnolia biondii HOM05D004359 ORTHO05D005052 1.3e-07 62.8 45 68.9
MCO01G401 Micromonas commoda HOM05D004359 ORTHO05D005052 4.1e-06 57.8 291 25.8


User provided reference genes

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