Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.4e-252 875.2 494 100.0
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.3e-162 576.2 504 65.7
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.5e-158 562.4 499 64.9
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 9.8e-153 544.3 504 63.7
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 8.1e-115 418.3 500 54.0
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.6e-105 386.7 496 51.4
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 2.8e-91 340.1 565 43.2
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 2.7e-86 323.6 520 43.8
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 6.1e-86 322.4 576 41.0
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 3.0e-85 320.1 538 43.1
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 2.0e-84 317.4 520 41.7
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 2.2e-83 313.9 520 44.4
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 2.8e-83 313.5 533 43.2
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 1.8e-82 310.8 469 44.8
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 2.0e-81 307.4 543 41.3
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 7.7e-81 305.4 568 40.7
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 1.0e-80 305.1 503 43.1
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 2.5e-79 300.4 532 41.0
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 7.2e-79 298.9 531 40.9
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 1.6e-78 297.7 579 39.0
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 2.7e-78 297.0 571 39.6
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 3.9e-77 293.1 513 42.3
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 5.2e-77 292.7 576 41.3
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 6.7e-77 292.4 535 40.2
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 6.7e-77 292.4 545 40.2
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 1.7e-75 287.7 499 43.3
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 2.8e-75 287.0 520 40.6
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 3.1e-74 283.5 503 39.8
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 9.1e-74 282.0 705 33.0
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 1.2e-73 281.6 529 39.1
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 1.6e-73 281.2 549 39.3
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 4.5e-73 279.6 514 39.3
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 5.9e-73 279.3 536 38.8
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 7.7e-73 278.9 549 41.3
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 7.7e-73 278.9 542 39.9
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 1.0e-72 278.5 542 39.7
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.7e-72 277.7 518 40.9
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 3.8e-72 276.6 332 51.5
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 5.0e-72 276.2 514 40.5
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.5e-71 274.6 622 37.9
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 1.5e-71 274.6 502 42.8
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 1.9e-71 274.2 231 66.2
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 1.9e-71 274.2 513 40.5
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 3.2e-71 273.5 487 42.7
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 7.2e-71 272.3 504 39.3
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 2.7e-70 270.4 526 38.8
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 3.6e-70 270.0 497 39.4
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 6.1e-70 269.2 518 39.2
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 2.3e-69 267.3 534 37.8
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.0e-69 266.5 514 40.5
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 5.2e-69 266.2 497 39.8
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 5.2e-69 266.2 501 39.9
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 1.2e-68 265.0 518 40.2
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.2e-68 265.0 509 38.9
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.6e-68 263.8 518 40.0
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 4.4e-68 263.1 509 39.7
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 4.4e-68 263.1 568 35.9
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 9.7e-68 261.9 514 39.1
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 9.7e-68 261.9 544 38.6
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.3e-67 261.5 501 43.3
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.7e-67 261.2 518 38.4
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 2.8e-67 260.4 524 39.3
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 4.8e-67 259.6 502 38.8
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 8.3e-67 258.8 545 37.8
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 1.4e-66 258.1 545 37.2
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 9.1e-66 255.4 583 36.2
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 9.1e-66 255.4 504 36.5
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 2.0e-65 254.2 527 37.2
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 7.7e-65 252.3 501 38.5
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 2.2e-64 250.8 503 37.8
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 1.1e-63 248.4 504 39.7
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.1e-63 248.4 514 39.7
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 3.2e-63 246.9 529 37.8
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 3.2e-63 246.9 522 39.8
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 7.2e-63 245.7 527 39.7
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 9.4e-63 245.4 539 38.6
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 2.1e-62 244.2 477 39.2
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 8.0e-62 242.3 683 32.1
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.4e-61 241.5 501 38.5
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 1.8e-61 241.1 506 37.9
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.3e-61 240.7 495 37.2
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 2.3e-61 240.7 499 37.7
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 6.8e-61 239.2 501 36.7
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 5.7e-60 236.1 495 38.4
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 9.8e-60 235.3 524 38.5
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 9.8e-60 235.3 509 37.3
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 1.7e-59 234.6 498 36.9
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 8.3e-59 232.3 539 36.9
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 3.1e-58 230.3 493 36.3
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 2.7e-57 227.3 514 37.0
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 3.5e-57 226.9 493 35.9
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 3.5e-57 226.9 262 53.1
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 5.9e-57 226.1 509 34.2
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 5.9e-57 226.1 493 35.5
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 1.0e-56 225.3 563 36.8
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 1.3e-56 224.9 496 36.1
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 1.3e-56 224.9 493 35.7
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 2.9e-56 223.8 515 33.6
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 1.9e-55 221.1 537 35.0
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 3.3e-55 220.3 499 34.7
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 3.3e-55 220.3 554 34.5
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 4.2e-55 219.9 503 35.6
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 7.2e-55 219.2 368 42.4
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 1.6e-54 218.0 513 33.7
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 3.6e-54 216.9 549 34.2
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 8.0e-54 215.7 493 38.1
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 1.0e-53 215.3 510 35.1
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 4.0e-53 213.4 487 35.3
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 6.8e-53 212.6 208 58.2
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 1.5e-52 211.5 519 35.8
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 2.6e-52 210.7 495 33.9
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.4e-52 209.9 213 58.2
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 2.2e-51 207.6 514 34.0
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 2.8e-51 207.2 438 39.7
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 1.1e-50 205.3 522 33.7
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 1.4e-50 204.9 502 38.2
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 1.8e-50 204.5 493 36.5
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 1.8e-50 204.5 495 35.6
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 4.1e-50 203.4 495 37.4
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 1.2e-49 201.8 509 35.4
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 1.6e-49 201.4 493 37.5
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 2.7e-49 200.7 425 38.8
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 3.5e-49 200.3 500 34.2
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 4.5e-49 199.9 523 31.7
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 5.9e-49 199.5 494 37.0
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 1.7e-48 198.0 511 32.7
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 6.6e-48 196.1 499 33.1
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 7.3e-47 192.6 167 63.5
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 1.8e-45 188.0 167 59.9
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.8e-45 188.0 172 59.3
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.8e-45 188.0 172 59.3
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 2.3e-45 187.6 524 35.5
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 1.3e-43 181.8 506 31.4
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 5.6e-39 166.4 538 30.7
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 9.5e-39 165.6 479 31.7
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 6.8e-37 159.5 537 29.6
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.3e-32 145.2 171 49.1
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 3.0e-32 144.1 493 29.0
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 5.6e-31 139.8 199 38.7
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.6e-30 137.1 184 39.7
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 5.8e-28 129.8 164 45.1
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 2.9e-27 127.5 116 62.9
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 3.7e-27 127.1 116 62.9
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 4.9e-27 126.7 425 29.9
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 3.2e-26 124.0 219 36.5
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 6.0e-25 119.8 495 31.9
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 3.0e-24 117.5 492 27.8
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 3.9e-24 117.1 187 39.6
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 3.3e-23 114.0 498 27.1
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 2.1e-22 111.3 504 26.4
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 5.2e-21 106.7 82 69.5
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 8.9e-21 105.9 118 53.4
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 4.4e-20 103.6 131 47.3
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 7.6e-20 102.8 189 49.2
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.2e-18 97.4 194 33.5
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 2.7e-17 94.4 91 52.7
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 8.7e-16 89.4 98 53.1
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 1.1e-15 89.0 140 38.6
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.9e-15 88.2 390 26.9
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 3.3e-15 87.4 74 62.2
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 4.3e-15 87.0 59 67.8
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 9.0e-13 79.3 101 48.5
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 2.0e-12 78.2 82 53.7
VMungo0720G2446 Vigna mungo HOM05D004018 ORTHO05D004408 2.9e-11 74.3 331 26.3
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 5.4e-10 70.1 160 33.1
CBR_g40749 Chara braunii HOM05D004018 ORTHO05D004408 9.3e-10 69.3 114 36.0
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.7e-09 67.8 109 40.4
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 3.5e-09 67.4 55 56.4
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 3.5e-09 67.4 55 56.4
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 4.6e-09 67.0 77 51.9
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 1.0e-08 65.9 47 63.8
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 1.1e-07 62.4 76 47.4
AT5G64980 Arabidopsis thaliana HOM05D008017 ORTHO05D009829 5.6e-07 60.1 81 37.0
Carub.0008s2581 Capsella rubella HOM05D008017 ORTHO05D009829 5.6e-07 60.1 62 43.5
Gohir.D02G151450 Gossypium hirsutum HOM05D004018 ORTHO05D004408 9.6e-07 59.3 98 40.8
AL8G42480 Arabidopsis lyrata HOM05D008017 ORTHO05D009829 1.6e-06 58.5 75 38.7
BraA06t26123Z Brassica rapa HOM05D008017 ORTHO05D009829 8.1e-06 56.2 46 56.5


User provided reference genes

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