Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G1141 Trochodendron aralioides HOM05D005323 ORTHO05D006820 1.5e-155 553.1 347 100.0
CiPaw.02G099700 Carya illinoinensis HOM05D005323 ORTHO05D006820 3.7e-138 495.4 347 79.8
QL10p057057 Quercus lobata HOM05D005323 ORTHO05D006820 4.8e-138 495.0 346 83.2
Dinv33215 Davidia involucrata HOM05D005323 ORTHO05D006820 2.4e-137 492.7 347 84.1
MELO3C011851.2 Cucumis melo HOM05D005323 ORTHO05D006820 4.1e-137 491.9 344 83.4
Phvul.001G114300 Phaseolus vulgaris HOM05D005323 ORTHO05D006820 5.9e-136 488.0 347 81.6
arahy.Tifrunner.gnm1.ann1.353MUE Arachis hypogaea HOM05D005323 ORTHO05D006820 1.0e-135 487.3 347 78.7
arahy.Tifrunner.gnm1.ann1.157ZG7 Arachis hypogaea HOM05D005323 ORTHO05D006820 1.3e-135 486.9 346 78.6
Manes.01G016900 Manihot esculenta HOM05D005323 ORTHO05D006820 1.3e-135 486.9 347 79.3
CsaV3_5G030120 Cucumis sativus L. HOM05D005323 ORTHO05D006820 1.7e-135 486.5 344 82.6
Sed0013916 Sechium edule HOM05D005323 ORTHO05D006820 6.5e-135 484.6 340 83.5
Glyma.16G037700 Glycine max HOM05D005323 ORTHO05D006820 1.1e-134 483.8 347 78.4
CSS0020323 Camellia sinensis var. sinensis HOM05D005323 ORTHO05D006820 1.4e-134 483.4 346 80.1
Lj1g0017737 Lotus japonicus HOM05D005323 ORTHO05D006820 1.4e-134 483.4 347 78.1
EL10Ac4g07922 Beta vulgaris HOM05D005323 ORTHO05D006820 3.2e-134 482.3 339 77.9
Lalb_Chr14g0364721 Lupinus albus HOM05D005323 ORTHO05D006820 5.5e-134 481.5 347 78.1
Sabra19G0108600 Salix brachista HOM05D005323 ORTHO05D006820 9.4e-134 480.7 347 81.8
Aqoxy4G03253 Aquilegia oxysepala HOM05D005323 ORTHO05D006820 1.6e-133 479.9 347 83.9
Dinv18320 Davidia involucrata HOM05D005323 ORTHO05D006820 2.7e-133 479.2 347 78.7
Medtr7g086360 Medicago truncatula HOM05D005323 ORTHO05D006820 2.7e-133 479.2 347 80.7
Cfa015676 Carpinus fangiana HOM05D005323 ORTHO05D006820 4.7e-133 478.4 347 80.1
Haze_00854 Corylus avellana HOM05D005323 ORTHO05D006820 6.1e-133 478.0 347 80.1
AUR62031624 Chenopodium quinoa HOM05D005323 ORTHO05D006820 1.0e-132 477.2 347 76.9
Rhsim09G0008200 Rhododendron simsii HOM05D005323 ORTHO05D006820 3.0e-132 475.7 348 76.7
TPR.G17865 Trifolium pratense HOM05D005323 ORTHO05D006820 3.9e-132 475.3 347 81.0
Actinidia27124 Actinidia chinensis HOM05D005323 ORTHO05D006820 6.7e-132 474.6 326 81.0
PSO675G7169 Papaver somniferum HOM05D005323 ORTHO05D006820 1.5e-131 473.4 347 79.5
Sc16g0006150 Simmondsia chinensis HOM05D005323 ORTHO05D006820 3.3e-131 472.2 347 78.1
Glyma.19G114900 Glycine max HOM05D005323 ORTHO05D006820 7.4e-131 471.1 347 80.7
Eucgr.L00010 Eucalyptus grandis HOM05D005323 ORTHO05D006820 2.2e-130 469.5 349 78.2
Lj6P177T10 Lonicera japonica HOM05D005323 ORTHO05D006820 3.7e-130 468.8 341 82.7
VMungo1383G1964 Vigna mungo HOM05D005323 ORTHO05D006820 1.1e-129 467.2 327 79.5
Atru.chr4.1467 Acer truncatum HOM05D005323 ORTHO05D006820 7.0e-129 464.5 345 86.7
Atru.chr4.1493 Acer truncatum HOM05D005323 ORTHO05D006820 7.0e-129 464.5 345 86.7
Potri.019G096900 Populus trichocarpa HOM05D005323 ORTHO05D006820 1.2e-128 463.8 347 80.1
PGSC0003DMG400026328 Solanum tuberosum HOM05D005323 ORTHO05D006820 3.5e-128 462.2 339 79.1
Peaxi162Scf00883g00035 Petunia axillaris HOM05D005323 ORTHO05D006820 4.5e-128 461.8 339 76.4
Nitab4.5_0000285g0060 Nicotiana tabacum HOM05D005323 ORTHO05D006820 5.9e-128 461.5 339 77.9
Sopen03g013260 Solanum pennellii HOM05D005323 ORTHO05D006820 3.8e-127 458.8 339 78.8
COL.COLO4_38123 Corchorus olitorius HOM05D005323 ORTHO05D006820 8.5e-127 457.6 347 80.7
Nitab4.5_0002913g0040 Nicotiana tabacum HOM05D005323 ORTHO05D006820 1.1e-126 457.2 335 78.2
CANSAT56G3038 Cannabis sativa HOM05D005323 ORTHO05D006820 2.5e-126 456.1 347 79.5
Ciclev10020927m.g Citrus clementina HOM05D005323 ORTHO05D006820 3.2e-126 455.7 345 80.0
Oeu015708.1 Olea europaea HOM05D005323 ORTHO05D006820 4.2e-126 455.3 340 86.2
Gohir.D10G122100 Gossypium hirsutum HOM05D005323 ORTHO05D006820 5.5e-126 454.9 347 80.4
Gorai.011G134300 Gossypium raimondii HOM05D005323 ORTHO05D006820 5.5e-126 454.9 347 80.4
Ca_08300_v3 Cicer arietinum L. HOM05D005323 ORTHO05D006820 7.2e-126 454.5 347 77.8
PGR042G1263 Punica granatum HOM05D005323 ORTHO05D006820 1.6e-125 453.4 349 76.2
Gohir.A10G144900 Gossypium hirsutum HOM05D005323 ORTHO05D006820 2.7e-125 452.6 347 80.1
Thecc.04G163800 Theobroma cacao HOM05D005323 ORTHO05D006820 2.3e-124 449.5 347 81.3
AL4G42640 Arabidopsis lyrata HOM05D005323 ORTHO05D006820 1.5e-123 446.8 347 79.0
DCAR_005453 Daucus carota HOM05D005323 ORTHO05D006820 1.5e-123 446.8 347 78.7
Psat0s4033g0160 Pisum sativum HOM05D005323 ORTHO05D006820 9.7e-123 444.1 347 74.1
THA.LOC104804129 Tarenaya hassleriana HOM05D005323 ORTHO05D006820 9.7e-123 444.1 347 79.0
TWI63G1046 Tripterygium wilfordii HOM05D005323 ORTHO05D006820 9.7e-123 444.1 347 79.8
Duzib212G0476 Durio zibethinus HOM05D005323 ORTHO05D006820 6.3e-122 441.4 347 79.3
Lsat_1_v5_gn_0_9241 Lactuca sativa HOM05D005323 ORTHO05D006820 8.2e-122 441.0 340 81.5
Cc11_g02260 Coffea canephora HOM05D005323 ORTHO05D006820 1.1e-121 440.7 341 79.5
HPP92_028318 Vanilla planifolia HOM05D005323 ORTHO05D006820 2.4e-121 439.5 348 72.7
A07p24790 Brassica napus HOM05D005323 ORTHO05D006820 7.0e-121 438.0 327 78.0
BraA07t30124Z Brassica rapa HOM05D005323 ORTHO05D006820 7.0e-121 438.0 327 78.0
TWI15G0703 Tripterygium wilfordii HOM05D005323 ORTHO05D006820 7.0e-121 438.0 347 79.5
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 9.1e-121 437.6 347 79.0
Duzib151G0361 Durio zibethinus HOM05D005323 ORTHO05D006820 9.1e-121 437.6 347 79.0
Carub.0004s2630 Capsella rubella HOM05D005323 ORTHO05D006820 2.6e-120 436.0 347 77.5
Sp5g03440 Schrenkiella parvula HOM05D005323 ORTHO05D006820 4.5e-120 435.3 327 77.1
Cpa.g.sc17.20 Carica papaya HOM05D005323 ORTHO05D006820 5.9e-120 434.9 347 73.8
AT2G43770 Arabidopsis thaliana HOM05D005323 ORTHO05D006820 1.0e-119 434.1 347 77.5
SalBow6G4087 Salvia bowleyana HOM05D005323 ORTHO05D006820 1.0e-119 434.1 340 83.2
MSTRG.22040 Avicennia marina HOM05D005323 ORTHO05D006820 2.2e-119 433.0 340 82.4
Sp4g25840 Schrenkiella parvula HOM05D005323 ORTHO05D006820 5.0e-119 431.8 347 77.8
ATR0743G149 Amborella trichopoda HOM05D005323 ORTHO05D006820 6.5e-119 431.4 341 72.4
Prupe.1G071000 Prunus persica HOM05D005323 ORTHO05D006820 6.5e-119 431.4 347 77.5
BcaC08g45003 Brassica carinata HOM05D005323 ORTHO05D006820 1.1e-118 430.6 327 76.8
C06p26380 Brassica napus HOM05D005323 ORTHO05D006820 1.1e-118 430.6 327 76.8
CARHR138940 Cardamine hirsuta HOM05D005323 ORTHO05D006820 1.5e-118 430.3 347 81.0
ECA240G0264 Erigeron canadensis HOM05D005323 ORTHO05D006820 2.5e-118 429.5 343 75.2
Os06g0653800 Oryza sativa ssp. japonica HOM05D005323 ORTHO05D006820 2.5e-118 429.5 340 75.9
BcaB02g07449 Brassica carinata HOM05D005323 ORTHO05D006820 4.2e-118 428.7 328 75.9
RcHm_v2.0_Chr4g0405641 Rosa chinensis HOM05D005323 ORTHO05D006820 4.2e-118 428.7 347 77.2
FAN07G1750 Fragaria x ananassa HOM05D005323 ORTHO05D006820 5.5e-118 428.3 347 77.2
HanXRQChr01g0001231 Helianthus annuus HOM05D005323 ORTHO05D006820 1.2e-117 427.2 322 79.2
SEGI_06199 Sequoiadendron giganteum HOM05D005323 ORTHO05D006820 1.2e-117 427.2 337 73.3
Migut.N03056 Erythranthe guttata HOM05D005323 ORTHO05D006820 1.6e-117 426.8 339 79.1
Migut.O00692 Erythranthe guttata HOM05D005323 ORTHO05D006820 1.6e-117 426.8 339 79.1
FAN22G1090 Fragaria x ananassa HOM05D005323 ORTHO05D006820 2.7e-117 426.0 347 76.9
SGA_v2.0_scaffold19G08852 Striga asiatica HOM05D005323 ORTHO05D006820 3.6e-117 425.6 339 77.3
MD16G1243600 Malus domestica HOM05D005323 ORTHO05D006820 6.1e-117 424.9 347 76.7
Oeu050326.1 Olea europaea HOM05D005323 ORTHO05D006820 8.0e-117 424.5 340 83.5
FvH4_4g10290 Fragaria vesca HOM05D005323 ORTHO05D006820 1.0e-116 424.1 347 76.7
Zm00001eb389600 Zea mays HOM05D005323 ORTHO05D006820 1.4e-116 423.7 336 75.9
FAN12G3871 Fragaria x ananassa HOM05D005323 ORTHO05D006820 1.8e-116 423.3 347 76.1
Thhalv10006086m.g Eutrema salsugineum HOM05D005323 ORTHO05D006820 2.0e-115 419.9 327 80.1
FAN17G0326 Fragaria x ananassa HOM05D005323 ORTHO05D006820 7.5e-115 417.9 347 75.8
Zm00001eb274960 Zea mays HOM05D005323 ORTHO05D006820 7.5e-115 417.9 340 75.0
FAN12G3690 Fragaria x ananassa HOM05D005323 ORTHO05D006820 4.1e-113 412.1 342 76.0
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 7.7e-112 407.9 347 75.2
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 5.0e-111 405.2 310 73.2
unitig_22.g5706 Utricularia gibba HOM05D005323 ORTHO05D006820 8.5e-111 404.4 312 84.6
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 2.5e-110 402.9 347 74.1
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 2.5e-110 402.9 347 74.1
Thhalv10001531m.g Eutrema salsugineum HOM05D005323 ORTHO05D006820 2.5e-110 402.9 347 74.1
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 5.5e-110 401.7 347 74.4
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 5.5e-110 401.7 347 74.4
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 5.5e-110 401.7 347 74.4
AagrBONN_evm.TU.Sc2ySwM_228.3872 Anthoceros agrestis HOM05D005323 ORTHO05D006820 1.4e-108 397.1 310 75.5
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 1.5e-107 393.7 342 61.4
HPP92_017571 Vanilla planifolia HOM05D005323 ORTHO05D006820 2.6e-107 392.9 314 65.3
SHI06205 Sapria himalayana HOM05D005323 ORTHO05D000023 1.4e-105 387.1 290 76.2
Pp3c6_28640 Physcomitrium patens HOM05D005323 ORTHO05D006820 2.3e-103 379.8 350 66.3
Actinidia28377 Actinidia chinensis HOM05D005323 ORTHO05D006820 1.1e-102 377.5 301 64.1
Pp3c5_3050 Physcomitrium patens HOM05D005323 ORTHO05D006820 3.0e-100 369.4 314 68.8
Gorai.005G008900 Gossypium raimondii HOM05D005323 ORTHO05D006820 6.3e-98 361.7 347 57.1
AUR62020514 Chenopodium quinoa HOM05D005323 ORTHO05D006820 7.0e-89 331.6 348 52.3
CBR_g4366 Chara braunii HOM05D005323 ORTHO05D006820 2.0e-88 330.1 280 74.6
CiPaw.01G169200 Carya illinoinensis HOM05D005323 ORTHO05D006820 2.5e-86 323.2 327 59.3
GSVIVG01038180001 Vitis vinifera HOM05D005323 ORTHO05D006820 3.3e-86 322.8 229 85.6
Solyc03g059100.3 Solanum lycopersicum HOM05D005323 ORTHO05D006820 1.8e-84 317.0 240 82.1
Lj6C229G10 Lonicera japonica HOM05D005323 ORTHO05D006820 6.8e-84 315.1 278 64.7
Sabra19G0107500 Salix brachista HOM05D005323 ORTHO05D006820 4.3e-78 295.8 195 81.0
Psat6g090360 Pisum sativum HOM05D005323 ORTHO05D006820 1.2e-72 277.7 193 69.4
Cre06.g255400 Chlamydomonas reinhardtii HOM05D005323 ORTHO05D006820 2.7e-72 276.6 345 46.7
MCO10G164 Micromonas commoda HOM05D005323 ORTHO05D006820 1.8e-68 263.8 310 57.4
Hma1.2p1_1156F.1_g262335 Hydrangea macrophylla HOM05D005323 ORTHO05D006820 1.3e-63 247.7 172 70.3
Hma1.2p1_1156F.1_g262340 Hydrangea macrophylla HOM05D005323 ORTHO05D006820 1.3e-63 247.7 172 70.3
QL10p056998 Quercus lobata HOM05D005323 ORTHO05D006820 1.8e-60 237.3 208 59.1
Haze_27161 Corylus avellana HOM05D005323 ORTHO05D006820 6.6e-55 218.8 298 57.4
PRCOL_00003404 Prasinoderma coloniale HOM05D005323 ORTHO05D006820 8.1e-53 211.8 323 48.6
Psat4g031880 Pisum sativum HOM05D005323 ORTHO05D006820 7.1e-41 172.2 145 73.1
Potri.013G128001 Populus trichocarpa HOM05D005323 ORTHO05D006820 6.5e-34 149.1 108 68.5
Cfa023113 Carpinus fangiana HOM05D005323 ORTHO05D017328 2.1e-32 144.1 290 27.2
Lj6E231T0 Lonicera japonica HOM05D005323 ORTHO05D006820 1.0e-31 141.7 87 78.2
Lj6A185T28 Lonicera japonica HOM05D005323 ORTHO05D006820 5.3e-28 129.4 211 40.3
Psat2g031000 Pisum sativum HOM05D003141 ORTHO05D003633 4.3e-22 109.8 54 88.9
C04p70770 Brassica napus HOM05D000037 ORTHO05D000419 2.2e-21 107.5 83 62.7
BcaC02g07149 Brassica carinata HOM05D000037 ORTHO05D091408 2.4e-20 104.0 78 62.8
Lj6C181T4 Lonicera japonica HOM05D005323 ORTHO05D006820 6.9e-20 102.4 75 64.0
DCAR_011058 Daucus carota HOM05D005323 ORTHO05D033416 2.2e-18 97.4 57 80.7
C04p32940 Brassica napus HOM05D005323 ORTHO05D033416 3.3e-14 83.6 42 88.1
BolC4t24857H Brassica oleracea HOM05D005323 ORTHO05D033416 3.3e-14 83.6 42 88.1
Lj6A188T23 Lonicera japonica HOM05D005323 ORTHO05D006820 1.0e-10 72.0 32 93.8
Lj6E201T0 Lonicera japonica HOM05D005323 ORTHO05D006820 7.2e-09 65.9 51 64.7
CDE04G2061 Ceratophyllum demersum HOM05D000684 ORTHO05D000688 1.0e-07 62.0 105 35.2
THA.LOC104818079 Tarenaya hassleriana HOM05D000684 ORTHO05D000688 3.0e-07 60.5 105 35.2
BcaB06g29558 Brassica carinata HOM05D000684 ORTHO05D000688 4.0e-07 60.1 105 33.3
CDE03G0436 Ceratophyllum demersum HOM05D000684 ORTHO05D000688 4.0e-07 60.1 105 36.2
BcaC05g28991 Brassica carinata HOM05D000684 ORTHO05D000688 5.2e-07 59.7 105 33.3
CARHR043310 Cardamine hirsuta HOM05D000684 ORTHO05D000688 5.2e-07 59.7 105 34.3
Carub.0003s1500 Capsella rubella HOM05D000684 ORTHO05D000688 6.7e-07 59.3 105 34.3
Eucgr.F03314 Eucalyptus grandis HOM05D000684 ORTHO05D000688 6.7e-07 59.3 105 32.4
CARHR090320 Cardamine hirsuta HOM05D000684 ORTHO05D000688 8.8e-07 58.9 105 33.3
Thhalv10020057m.g Eutrema salsugineum HOM05D000684 ORTHO05D000688 8.8e-07 58.9 105 33.3
BcaB02g10928 Brassica carinata HOM05D000684 ORTHO05D000688 1.5e-06 58.2 108 32.4
BcaC08g44044 Brassica carinata HOM05D000684 ORTHO05D000688 1.5e-06 58.2 105 33.3
Sabra11G0103900 Salix brachista HOM05D000684 ORTHO05D000688 1.5e-06 58.2 105 34.3
AL3G27760 Arabidopsis lyrata HOM05D000684 ORTHO05D000688 2.6e-06 57.4 105 33.3
BcaC09g48495 Brassica carinata HOM05D000684 ORTHO05D000688 2.6e-06 57.4 108 32.4
Carub.0001s4225 Capsella rubella HOM05D000684 ORTHO05D000688 2.6e-06 57.4 105 33.3
MCO09G498 Micromonas commoda HOM05D009278 ORTHO05D002685 2.6e-06 57.4 152 47.4
Duzib170G0222 Durio zibethinus HOM05D000684 ORTHO05D000688 3.3e-06 57.0 105 31.4
Thhalv10011249m.g Eutrema salsugineum HOM05D000684 ORTHO05D000688 3.3e-06 57.0 109 32.1
Potri.001G399600 Populus trichocarpa HOM05D000684 ORTHO05D000688 4.4e-06 56.6 105 32.4
TAR629G2071 Trochodendron aralioides HOM05D000684 ORTHO05D000688 4.4e-06 56.6 105 32.4
VMungo0331G0866 Vigna mungo HOM05D000684 ORTHO05D000688 4.4e-06 56.6 163 24.5
Lj9A477G62 Lonicera japonica HOM05D002332 ORTHO05D002509 5.7e-06 56.2 111 33.3
Nn1g06522 Nelumbo nucifera HOM05D000684 ORTHO05D000688 5.7e-06 56.2 105 32.4
Potri.011G119500 Populus trichocarpa HOM05D000684 ORTHO05D000688 5.7e-06 56.2 105 33.3
PGR031G1852 Punica granatum HOM05D000684 ORTHO05D000688 5.7e-06 56.2 105 32.4
Sp1g39640 Schrenkiella parvula HOM05D000684 ORTHO05D000688 5.7e-06 56.2 105 32.4
MSTRG.6835 Avicennia marina HOM05D000684 ORTHO05D000688 7.5e-06 55.8 105 31.4
BolC1t04878H Brassica oleracea HOM05D000684 ORTHO05D000688 7.5e-06 55.8 108 33.3
Ciclev10007392m.g Citrus clementina HOM05D000684 ORTHO05D000688 7.5e-06 55.8 105 31.4
Gorai.007G322900 Gossypium raimondii HOM05D000684 ORTHO05D000688 7.5e-06 55.8 105 30.5
Actinidia09688 Actinidia chinensis HOM05D000684 ORTHO05D000688 9.7e-06 55.5 105 30.5
Lsat_1_v5_gn_5_127880 Lactuca sativa HOM05D000684 ORTHO05D000688 9.7e-06 55.5 105 35.2
HPP92_020057 Vanilla planifolia HOM05D000684 ORTHO05D000688 9.7e-06 55.5 105 31.4


User provided reference genes

Program Settings