Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 1.9e-164 582.8 385 100.0
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 2.2e-67 260.4 308 58.1
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 1.6e-65 254.2 292 53.8
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 4.6e-65 252.7 286 55.2
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 1.1e-53 214.9 298 52.0
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 1.8e-48 197.6 287 53.0
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 4.8e-46 189.5 325 45.5
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 6.9e-45 185.7 296 44.9
Dinv16399 Davidia involucrata HOM05D007706 ORTHO05D009593 1.3e-43 181.4 299 47.8
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 3.8e-43 179.9 288 45.5
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 1.1e-42 178.3 290 44.8
QL09p041349 Quercus lobata HOM05D007706 ORTHO05D009593 1.0e-40 171.8 296 46.6
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 2.3e-40 170.6 295 43.7
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 5.1e-40 169.5 290 46.6
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 1.5e-36 157.9 227 47.1
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 5.9e-36 156.0 290 45.5
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 5.9e-36 156.0 310 44.8
Duzib133G1528 Durio zibethinus HOM05D007706 ORTHO05D009593 1.0e-35 155.2 298 43.0
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 2.2e-35 154.1 295 43.7
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 3.8e-35 153.3 293 43.3
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 5.0e-35 152.9 236 48.7
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 5.0e-35 152.9 302 43.4
MD05G1189100 Malus domestica HOM05D007706 ORTHO05D009593 6.5e-35 152.5 292 45.5
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.9e-34 151.0 306 39.5
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 3.2e-34 150.2 296 40.2
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 9.4e-34 148.7 296 40.5
Prupe.8G215700 Prunus persica HOM05D007706 ORTHO05D009593 1.6e-33 147.9 291 46.7
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 2.7e-33 147.1 293 42.3
Dinv34676 Davidia involucrata HOM05D007706 ORTHO05D009593 7.9e-33 145.6 298 47.0
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 1.0e-32 145.2 307 40.7
CSS0048547 Camellia sinensis var. sinensis HOM05D007706 ORTHO05D009593 1.8e-32 144.4 306 45.8
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 1.8e-32 144.4 306 40.5
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 2.3e-32 144.1 306 37.9
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.1e-31 141.7 298 37.2
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 5.7e-31 139.4 294 41.5
Sabra02G0195300 Salix brachista HOM05D007706 ORTHO05D009593 3.7e-30 136.7 298 42.3
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 4.8e-30 136.3 294 42.9
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 6.3e-30 136.0 301 38.5
Lj1g0013336 Lotus japonicus HOM05D007706 ORTHO05D009593 6.3e-30 136.0 297 41.1
arahy.Tifrunner.gnm1.ann1.S77KHM Arachis hypogaea HOM05D007706 ORTHO05D009593 1.1e-29 135.2 304 42.8
Solyc09g064630.3 Solanum lycopersicum HOM05D007706 ORTHO05D009593 2.4e-29 134.0 296 36.5
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 3.1e-29 133.7 301 40.2
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 3.1e-29 133.7 291 42.3
Sopen09g025790 Solanum pennellii HOM05D007706 ORTHO05D009593 6.9e-29 132.5 296 36.1
TWI12G0795 Tripterygium wilfordii HOM05D007706 ORTHO05D009593 1.5e-28 131.3 292 44.2
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 2.0e-28 131.0 295 37.3
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 2.6e-28 130.6 296 39.2
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 4.5e-28 129.8 291 41.2
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 4.5e-28 129.8 299 38.8
vmacro02710 Vaccinium macrocarpon HOM05D007706 ORTHO05D009593 4.5e-28 129.8 307 37.1
PGSC0003DMG400008584 Solanum tuberosum HOM05D007706 ORTHO05D009593 5.9e-28 129.4 296 36.5
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 3.8e-27 126.7 280 39.6
Nitab4.5_0007992g0040 Nicotiana tabacum HOM05D007706 ORTHO05D009593 1.1e-26 125.2 298 35.9
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 3.2e-26 123.6 297 39.7
Cpa.g.sc87.26 Carica papaya HOM05D007706 ORTHO05D009593 4.2e-26 123.2 305 40.0
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 4.2e-26 123.2 313 35.8
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 5.5e-26 122.9 306 37.3
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 5.5e-26 122.9 286 37.1
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 4.7e-25 119.8 291 38.5
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 1.0e-24 118.6 319 44.2
TPR.G20053 Trifolium pratense HOM05D007706 ORTHO05D009593 1.0e-24 118.6 294 38.8
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 1.8e-24 117.9 299 39.5
RcHm_v2.0_Chr6g0286691 Rosa chinensis HOM05D007706 ORTHO05D009593 2.3e-24 117.5 289 40.5
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 3.0e-24 117.1 295 39.3
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 3.0e-24 117.1 291 38.1
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 5.2e-24 116.3 289 38.4
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 5.2e-24 116.3 292 39.4
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 8.8e-24 115.5 265 37.7
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 1.5e-23 114.8 297 38.7
SalBow4G1824 Salvia bowleyana HOM05D007706 ORTHO05D009593 2.6e-23 114.0 301 34.2
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 3.3e-23 113.6 314 42.7
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 4.4e-23 113.2 293 37.9
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 4.4e-23 113.2 288 35.4
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 5.7e-23 112.8 317 42.6
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 7.4e-23 112.5 290 42.1
FvH4_2g20530 Fragaria vesca HOM05D007706 ORTHO05D009593 9.7e-23 112.1 288 42.0
FAN24G1454 Fragaria x ananassa HOM05D007706 ORTHO05D009593 9.7e-23 112.1 288 42.0
Glyma.03G167200 Glycine max HOM05D007706 ORTHO05D009593 1.7e-22 111.3 291 39.9
Manes.12G037850 Manihot esculenta HOM05D007706 ORTHO05D009593 1.7e-22 111.3 292 40.8
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 2.8e-22 110.5 237 38.4
CANSAT01G1705 Cannabis sativa HOM05D007706 ORTHO05D009593 8.2e-22 109.0 288 41.0
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 2.4e-21 107.5 212 38.7
CiPaw.03G270700 Carya illinoinensis HOM05D007706 ORTHO05D009593 4.1e-21 106.7 311 40.2
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 4.1e-21 106.7 306 36.9
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 5.3e-21 106.3 297 35.4
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 9.1e-21 105.5 289 38.1
Lalb_Chr20g0113631 Lupinus albus HOM05D007706 ORTHO05D009593 1.2e-20 105.1 300 35.3
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 1.2e-20 105.1 298 35.9
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 1.6e-20 104.8 292 32.9
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 2.0e-20 104.4 290 36.9
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 4.5e-20 103.2 164 42.7
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 5.9e-20 102.8 169 43.8
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 2.2e-19 100.9 304 37.5
Medtr7g099260 Medicago truncatula HOM05D007706 ORTHO05D009593 1.1e-18 98.6 301 37.5
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 1.1e-18 98.6 167 46.1
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 1.5e-18 98.2 303 37.3
FAN15G0362 Fragaria x ananassa HOM05D007706 ORTHO05D009593 4.2e-18 96.7 288 36.8
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 7.2e-18 95.9 300 36.3
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.6e-17 94.7 169 42.0
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 1.6e-17 94.7 296 33.4
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 8.0e-17 92.4 263 35.4
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.0e-16 92.0 169 42.0
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 1.8e-16 91.3 173 43.4
Migut.N02230 Erythranthe guttata HOM05D007706 ORTHO05D009593 1.8e-16 91.3 301 33.2
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 2.3e-16 90.9 289 33.9
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 1.2e-15 88.6 170 39.4
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.5e-15 88.2 170 42.4
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 2.6e-15 87.4 169 43.2
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 5.7e-15 86.3 170 38.2
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 9.7e-15 85.5 169 39.6
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.7e-14 84.7 174 41.4
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 2.8e-14 84.0 172 39.5
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 2.8e-14 84.0 172 39.5
HPP92_022478 Vanilla planifolia HOM05D007706 ORTHO05D009593 4.8e-14 83.2 294 29.9
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 8.2e-14 82.4 297 35.7
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 3.1e-13 80.5 169 39.1
MSTRG.18353 Avicennia marina HOM05D007706 ORTHO05D009593 4.1e-13 80.1 305 29.5
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 4.1e-13 80.1 173 39.3
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 5.3e-13 79.7 294 27.2
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 5.3e-13 79.7 173 39.9
CsaV3_6G007370 Cucumis sativus L. HOM05D007706 ORTHO05D009593 7.0e-13 79.3 299 33.4
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 7.0e-13 79.3 184 35.3
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 7.0e-13 79.3 169 38.5
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 7.0e-13 79.3 162 37.7
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 9.1e-13 79.0 175 38.9
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 2.0e-12 77.8 170 40.6
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 1.0e-11 75.5 154 38.3
MELO3C022390.2 Cucumis melo HOM05D007706 ORTHO05D009593 1.3e-11 75.1 294 36.1
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 1.7e-11 74.7 166 35.5
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 6.5e-11 72.8 190 32.6
SEGI_40436 Sequoiadendron giganteum HOM05D052464 ORTHO05D009593 1.9e-10 71.2 311 28.0
Sopen12g010960 Solanum pennellii HOM05D000004 ORTHO05D009593 1.9e-10 71.2 190 30.5
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 2.7e-09 67.4 177 27.7
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 2.7e-09 67.4 188 35.6
SGA_v2.0_scaffold1G00652 Striga asiatica HOM05D007706 ORTHO05D009593 6.1e-09 66.2 302 30.1
Os03g0140700 Oryza sativa ssp. japonica HOM05D007706 ORTHO05D009593 8.0e-09 65.9 296 33.1
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 1.0e-08 65.5 164 37.2
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 1.4e-08 65.1 101 41.6
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 2.3e-08 64.3 96 41.7
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 2.3e-08 64.3 187 33.7
Nitab4.5_0000845g0230 Nicotiana tabacum HOM05D007706 ORTHO05D009593 6.8e-08 62.8 42 61.9
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 8.8e-08 62.4 176 36.9
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 1.5e-07 61.6 107 39.3
COL.COLO4_10568 Corchorus olitorius HOM05D007706 ORTHO05D009593 1.5e-07 61.6 77 46.8
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 3.4e-07 60.5 188 32.4
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 5.7e-07 59.7 44 63.6
Lalb_Chr01g0019491 Lupinus albus HOM05D007706 ORTHO05D009593 7.5e-07 59.3 90 48.9
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 9.8e-07 58.9 189 30.7
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 9.8e-07 58.9 401 25.9
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 1.3e-06 58.5 97 37.1
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 1.3e-06 58.5 50 52.0
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 1.3e-06 58.5 83 42.2
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 2.2e-06 57.8 178 33.7
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 2.8e-06 57.4 175 31.4
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 4.8e-06 56.6 174 28.7
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 4.8e-06 56.6 170 34.1
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 6.3e-06 56.2 108 35.2
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 6.3e-06 56.2 93 39.8
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 8.3e-06 55.8 40 62.5


User provided reference genes

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