Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 9.5e-164 580.1 290 100.0
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 3.5e-134 481.9 298 82.9
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 3.1e-106 389.0 300 68.7
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 2.0e-97 359.8 294 65.0
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 4.5e-89 332.0 262 67.9
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 5.9e-89 331.6 268 66.4
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 2.9e-88 329.3 258 66.3
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 3.8e-88 328.9 255 67.8
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 3.2e-87 325.9 265 65.7
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 4.2e-87 325.5 272 66.5
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 9.4e-87 324.3 265 65.3
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 2.7e-86 322.8 269 64.7
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 7.9e-86 321.2 257 65.8
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.0e-85 320.9 254 66.1
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.4e-85 320.5 273 64.5
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 1.8e-85 320.1 255 67.5
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 1.8e-85 320.1 262 66.0
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 3.0e-85 319.3 273 64.1
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 6.7e-85 318.2 296 60.1
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 1.1e-84 317.4 292 61.0
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 1.1e-84 317.4 258 65.5
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 1.5e-84 317.0 265 65.3
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 5.7e-84 315.1 260 65.4
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 1.7e-83 313.5 263 65.0
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.7e-83 313.5 261 64.8
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.2e-83 313.2 261 64.8
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 3.1e-82 309.3 257 65.4
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 5.3e-82 308.5 283 60.1
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 5.3e-82 308.5 262 63.4
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 9.1e-82 307.8 275 63.3
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.0e-81 306.6 263 63.5
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 5.9e-81 305.1 270 64.1
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 5.9e-81 305.1 295 58.0
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 1.3e-80 303.9 257 65.0
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 2.2e-80 303.1 257 65.4
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 6.5e-80 301.6 253 63.6
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 1.5e-79 300.4 295 57.3
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 7.2e-79 298.1 247 65.2
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 9.4e-79 297.7 287 59.2
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 2.7e-78 296.2 288 58.7
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 8.0e-78 294.7 286 58.7
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 1.4e-77 293.9 288 58.3
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 1.4e-77 293.9 257 61.1
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 3.0e-77 292.7 229 68.6
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 2.6e-76 289.7 267 61.4
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 3.3e-76 289.3 259 62.5
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 3.3e-76 289.3 262 61.1
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 5.7e-76 288.5 230 69.1
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 1.7e-75 287.0 267 59.2
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 6.3e-75 285.0 262 61.1
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 8.2e-75 284.6 230 67.4
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 1.1e-74 284.3 248 62.5
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 1.4e-74 283.9 254 61.4
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 1.8e-74 283.5 264 60.2
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 4.1e-74 282.3 306 55.6
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 7.0e-74 281.6 265 59.6
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 1.7e-72 276.9 261 59.4
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 2.2e-72 276.6 268 57.1
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 2.9e-72 276.2 260 58.8
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 4.2e-71 272.3 230 65.2
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 7.2e-71 271.6 220 65.5
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 1.2e-70 270.8 267 59.9
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 1.2e-70 270.8 260 58.1
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 1.6e-70 270.4 264 58.7
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 2.1e-70 270.0 263 57.0
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 1.8e-69 266.9 265 58.1
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 5.2e-69 265.4 296 53.7
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 2.6e-68 263.1 278 55.4
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 9.8e-68 261.2 247 60.3
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.3e-67 260.8 260 59.2
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.7e-67 259.2 251 59.4
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 1.4e-66 257.3 221 63.8
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 4.1e-66 255.8 221 63.3
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 5.4e-66 255.4 256 57.8
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 4.2e-63 245.7 260 56.2
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 9.5e-63 244.6 280 53.6
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 1.7e-59 233.8 263 52.5
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.2e-57 227.6 199 60.8
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 1.6e-57 227.3 218 56.9
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 3.5e-57 226.1 196 61.2
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 4.5e-57 225.7 257 54.9
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 1.3e-56 224.2 414 37.9
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.7e-56 223.8 227 56.8
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 1.1e-55 221.1 261 52.1
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 1.9e-55 220.3 221 56.1
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 3.3e-55 219.5 320 46.9
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 7.3e-55 218.4 221 57.0
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 9.5e-55 218.0 221 56.1
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 1.0e-53 214.5 227 55.5
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 1.2e-52 211.1 237 54.0
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 7.5e-52 208.4 238 52.9
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 2.9e-51 206.5 194 61.9
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 4.9e-51 205.7 263 50.2
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 1.4e-50 204.1 264 48.9
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 1.8e-50 203.8 197 59.9
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 3.2e-50 203.0 243 53.1
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 4.1e-50 202.6 242 52.9
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.1e-50 202.6 195 57.4
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 7.0e-50 201.8 182 61.5
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 1.2e-49 201.1 249 49.4
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 3.5e-49 199.5 264 48.9
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 3.9e-48 196.1 262 47.7
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 1.9e-47 193.7 257 47.9
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 9.5e-47 191.4 252 49.2
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 1.6e-46 190.7 210 53.8
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 6.2e-46 188.7 274 45.6
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 6.2e-46 188.7 274 45.6
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 1.4e-45 187.6 276 44.9
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 1.4e-45 187.6 276 44.9
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 1.4e-45 187.6 276 44.9
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 9.2e-42 174.9 250 46.4
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 1.7e-40 170.6 253 46.2
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 6.6e-40 168.7 188 51.6
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 2.1e-38 163.7 184 54.3
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 5.2e-37 159.1 229 51.1
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 3.3e-31 139.8 200 46.0
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 1.4e-29 134.4 162 52.5
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 9.9e-28 128.3 225 44.0
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 2.1e-25 120.6 188 41.5
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 6.6e-24 115.5 127 55.1
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 3.3e-23 113.2 121 53.7
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 1.1e-21 108.2 216 42.1
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 2.4e-21 107.1 237 39.7
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 2.7e-17 93.6 50 88.0
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 2.5e-15 87.0 135 47.4
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 4.0e-13 79.7 56 69.6
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 4.0e-13 79.7 53 71.7
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 1.3e-11 74.7 137 40.1
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 4.9e-11 72.8 69 56.5


User provided reference genes

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