Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G1002 Trochodendron aralioides HOM05D002515 ORTHO05D002722 1.1e-78 296.6 150 100.0
TAR636G1413 Trochodendron aralioides HOM05D002515 ORTHO05D002722 3.4e-56 221.9 134 87.3
TAR633G1102 Trochodendron aralioides HOM05D002515 ORTHO05D002722 1.9e-38 162.9 125 73.6
Dinv35606 Davidia involucrata HOM05D002515 ORTHO05D002722 7.9e-21 104.4 113 54.9
CSS0028630 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 6.7e-20 101.3 126 50.0
GSVIVG01024972001 Vitis vinifera HOM05D002515 ORTHO05D002722 3.3e-19 99.0 131 43.5
Dinv16998 Davidia involucrata HOM05D002515 ORTHO05D002722 5.7e-19 98.2 121 50.4
Dinv42947 Davidia involucrata HOM05D002515 ORTHO05D002722 5.7e-19 98.2 121 50.4
Dinv43153 Davidia involucrata HOM05D002515 ORTHO05D002722 5.7e-19 98.2 121 50.4
Nn2g10370 Nelumbo nucifera HOM05D002515 ORTHO05D002722 4.8e-18 95.1 127 49.6
PSO339G4477 Papaver somniferum HOM05D002515 ORTHO05D002722 1.1e-17 94.0 104 48.1
Prupe.6G254700 Prunus persica HOM05D002515 ORTHO05D002722 2.4e-17 92.8 126 49.2
CSS0020060 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 2.0e-16 89.7 125 44.0
CSS0030774 Camellia sinensis var. sinensis HOM05D002515 ORTHO05D002722 2.0e-16 89.7 125 44.0
RcHm_v2.0_Chr5g0064421 Rosa chinensis HOM05D002515 ORTHO05D002722 7.6e-16 87.8 126 44.4
Manes.04G034800 Manihot esculenta HOM05D002515 ORTHO05D002722 1.0e-15 87.4 126 43.7
Aqoxy4G02918 Aquilegia oxysepala HOM05D002515 ORTHO05D002722 2.2e-15 86.3 106 48.1
Actinidia07036 Actinidia chinensis HOM05D002515 ORTHO05D002722 5.0e-15 85.1 116 49.1
Thecc.09G300700 Theobroma cacao HOM05D002515 ORTHO05D002722 6.5e-15 84.7 124 46.8
Duzib150G0343 Durio zibethinus HOM05D002515 ORTHO05D002722 1.1e-14 84.0 154 39.6
MD12G1141400 Malus domestica HOM05D002515 ORTHO05D002722 1.9e-14 83.2 123 44.7
Ciclev10013810m.g Citrus clementina HOM05D002515 ORTHO05D002722 2.5e-14 82.8 124 39.5
FAN25G0844 Fragaria x ananassa HOM05D002515 ORTHO05D002722 3.2e-14 82.4 132 42.4
Atru.chr3.3898 Acer truncatum HOM05D002515 ORTHO05D002722 4.2e-14 82.0 127 41.7
FAN21G0377 Fragaria x ananassa HOM05D002515 ORTHO05D006653 4.2e-14 82.0 132 42.4
FvH4_3g36010 Fragaria vesca HOM05D002515 ORTHO05D002722 7.2e-14 81.3 145 42.8
FAN11G3380 Fragaria x ananassa HOM05D002515 ORTHO05D002722 7.2e-14 81.3 132 43.2
MD04G1128800 Malus domestica HOM05D002515 ORTHO05D002722 7.2e-14 81.3 124 42.7
Thecc.05G040000 Theobroma cacao HOM05D002515 ORTHO05D002722 7.2e-14 81.3 101 47.5
ATR0559G060 Amborella trichopoda HOM05D002515 ORTHO05D002722 2.1e-13 79.7 109 45.0
Manes.11G128400 Manihot esculenta HOM05D002515 ORTHO05D002722 2.1e-13 79.7 129 41.9
Actinidia37204 Actinidia chinensis HOM05D002515 ORTHO05D002722 2.7e-13 79.3 116 48.3
Ciclev10027797m.g Citrus clementina HOM05D002515 ORTHO05D002722 3.6e-13 79.0 75 58.7
GSVIVG01034175001 Vitis vinifera HOM05D002515 ORTHO05D002722 3.6e-13 79.0 138 40.6
Duzib093G1384 Durio zibethinus HOM05D002515 ORTHO05D002722 4.6e-13 78.6 142 38.7
Haze_24092 Corylus avellana HOM05D002515 ORTHO05D002722 6.1e-13 78.2 102 47.1
Prupe.6G078200 Prunus persica HOM05D002515 ORTHO05D002722 6.1e-13 78.2 130 40.8
CANSAT35G0014 Cannabis sativa HOM05D002515 ORTHO05D002722 7.9e-13 77.8 117 44.4
Gohir.A05G095700 Gossypium hirsutum HOM05D002515 ORTHO05D002722 1.8e-12 76.6 120 45.0
Cfa011498 Carpinus fangiana HOM05D002515 ORTHO05D006653 2.3e-12 76.3 102 47.1
Nn6g33418 Nelumbo nucifera HOM05D002082 ORTHO05D002130 3.0e-12 75.9 73 53.4
CiPaw.09G192400 Carya illinoinensis HOM05D002515 ORTHO05D002722 3.9e-12 75.5 118 40.7
Gorai.009G099300 Gossypium raimondii HOM05D002515 ORTHO05D002722 3.9e-12 75.5 120 44.2
MD11G1109700 Malus domestica HOM05D002515 ORTHO05D002722 3.9e-12 75.5 97 48.5
Actinidia13143 Actinidia chinensis HOM05D002515 ORTHO05D002722 5.1e-12 75.1 127 41.7
RcHm_v2.0_Chr3g0466591 Rosa chinensis HOM05D002515 ORTHO05D002722 5.1e-12 75.1 103 47.6
FAN16G3741 Fragaria x ananassa HOM05D002515 ORTHO05D002722 6.7e-12 74.7 132 40.9
QL01p032098 Quercus lobata HOM05D002515 ORTHO05D002722 6.7e-12 74.7 111 42.3
Cpa.g.sc81.155 Carica papaya HOM05D002515 ORTHO05D002722 8.8e-12 74.3 117 41.9
TWI74G1566 Tripterygium wilfordii HOM05D002515 ORTHO05D002722 8.8e-12 74.3 125 40.0
FAN02G3265 Fragaria x ananassa HOM05D002515 ORTHO05D002722 1.9e-11 73.2 110 43.6
vmacro08655 Vaccinium macrocarpon HOM05D002515 ORTHO05D002722 1.9e-11 73.2 117 36.8
FvH4_6g13720 Fragaria vesca HOM05D002515 ORTHO05D002722 2.5e-11 72.8 110 43.6
FAN05G1797 Fragaria x ananassa HOM05D002515 ORTHO05D002722 2.5e-11 72.8 110 43.6
MBI18_g06450_MAGBIO Magnolia biondii HOM05D002082 ORTHO05D002130 2.5e-11 72.8 123 37.4
Cpa.g.sc228.13 Carica papaya HOM05D003688 ORTHO05D004338 4.3e-11 72.0 128 39.1
Actinidia05311 Actinidia chinensis HOM05D002515 ORTHO05D002722 7.4e-11 71.2 87 48.3
Duzib168G0968 Durio zibethinus HOM05D002515 ORTHO05D002722 7.4e-11 71.2 116 41.4
FAN14G0333 Fragaria x ananassa HOM05D002515 ORTHO05D002722 7.4e-11 71.2 110 43.6
Manes.01G059400 Manihot esculenta HOM05D002082 ORTHO05D002130 7.4e-11 71.2 126 37.3
Atru.chr8.1972 Acer truncatum HOM05D002515 ORTHO05D002722 9.7e-11 70.9 129 37.2
FAN09G4793 Fragaria x ananassa HOM05D002515 ORTHO05D002722 9.7e-11 70.9 110 44.5
Sc01g0004350 Simmondsia chinensis HOM05D002515 ORTHO05D002722 9.7e-11 70.9 91 44.0
Rhsim04G0156800 Rhododendron simsii HOM05D002515 ORTHO05D002722 1.7e-10 70.1 71 52.1
Rhsim04G0157000 Rhododendron simsii HOM05D002515 ORTHO05D002722 1.7e-10 70.1 71 52.1
TAR636G0944 Trochodendron aralioides HOM05D002082 ORTHO05D002130 1.7e-10 70.1 106 43.4
COL.COLO4_18507 Corchorus olitorius HOM05D002515 ORTHO05D002722 2.2e-10 69.7 114 44.7
Cc06_g02660 Coffea canephora HOM05D002515 ORTHO05D002722 4.8e-10 68.6 101 41.6
Migut.L01943 Erythranthe guttata HOM05D002515 ORTHO05D002722 6.3e-10 68.2 85 43.5
MBI14_g20110_MAGBIO Magnolia biondii HOM05D002515 ORTHO05D002722 6.3e-10 68.2 107 45.8
Thecc.09G322100 Theobroma cacao HOM05D002515 ORTHO05D002722 6.3e-10 68.2 114 43.0
TAR629G0527 Trochodendron aralioides HOM05D002082 ORTHO05D002130 8.2e-10 67.8 81 45.7
TWI79G0006 Tripterygium wilfordii HOM05D002515 ORTHO05D002722 1.4e-09 67.0 121 36.4
Lj2A1062T48 Lonicera japonica HOM05D002515 ORTHO05D002722 1.8e-09 66.6 97 42.3
Potri.001G239500 Populus trichocarpa HOM05D002515 ORTHO05D002722 1.8e-09 66.6 129 38.0
Nn1g01537 Nelumbo nucifera HOM05D002082 ORTHO05D002130 3.1e-09 65.9 80 50.0
Lj2A95G42 Lonicera japonica HOM05D002515 ORTHO05D002722 4.1e-09 65.5 97 42.3
THA.LOC104816274 Tarenaya hassleriana HOM05D002515 ORTHO05D002722 4.1e-09 65.5 84 44.0
CANSAT54G1460 Cannabis sativa HOM05D002515 ORTHO05D002722 5.3e-09 65.1 106 43.4
MBI17_g24689_MAGBIO Magnolia biondii HOM05D002082 ORTHO05D002130 5.3e-09 65.1 73 43.8
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 9.1e-09 64.3 70 47.1
Dinv32485 Davidia involucrata HOM05D002082 ORTHO05D002130 1.2e-08 63.9 120 38.3
TAR375G0315 Trochodendron aralioides HOM05D002082 ORTHO05D002130 1.2e-08 63.9 121 35.5
Haze_08787 Corylus avellana HOM05D002082 ORTHO05D002130 2.0e-08 63.2 109 41.3
Oeu054145.1 Olea europaea HOM05D002515 ORTHO05D002722 2.0e-08 63.2 122 33.6
Cpa.g.sc74.55 Carica papaya HOM05D002082 ORTHO05D002130 2.6e-08 62.8 100 40.0
Nitab4.5_0000202g0110 Nicotiana tabacum HOM05D002515 ORTHO05D002722 2.6e-08 62.8 108 38.9
PSO782G2744 Papaver somniferum HOM05D002082 ORTHO05D002130 2.6e-08 62.8 121 33.1
Atru.chr9.2180 Acer truncatum HOM05D002082 ORTHO05D002130 3.4e-08 62.4 81 44.4
Manes.02G019700 Manihot esculenta HOM05D002082 ORTHO05D002130 3.4e-08 62.4 103 36.9
CiPaw.13G094800 Carya illinoinensis HOM05D002515 ORTHO05D002722 5.9e-08 61.6 111 39.6
PSO478G2816 Papaver somniferum HOM05D002082 ORTHO05D002130 5.9e-08 61.6 121 33.9
Potri.001G103400 Populus trichocarpa HOM05D002082 ORTHO05D002130 5.9e-08 61.6 123 34.1
Nitab4.5_0000216g0300 Nicotiana tabacum HOM05D002515 ORTHO05D002722 7.7e-08 61.2 85 42.4
Ciclev10018878m.g Citrus clementina HOM05D002082 ORTHO05D002130 1.0e-07 60.8 72 45.8
Dinv43818 Davidia involucrata HOM05D002082 ORTHO05D002130 1.0e-07 60.8 67 46.3
Aqoxy7G00305 Aquilegia oxysepala HOM05D002082 ORTHO05D002130 1.7e-07 60.1 68 48.5
Oeu036148.1 Olea europaea HOM05D002515 ORTHO05D002722 1.7e-07 60.1 63 44.4
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 1.7e-07 60.1 70 42.9
Cc01_g12840 Coffea canephora HOM05D002515 ORTHO05D002722 2.9e-07 59.3 149 38.9
vmacro03074 Vaccinium macrocarpon HOM05D002515 ORTHO05D002722 2.9e-07 59.3 96 42.7
Haze_24739 Corylus avellana HOM05D002769 ORTHO05D003160 3.8e-07 58.9 67 44.8
Nn3g19851 Nelumbo nucifera HOM05D002769 ORTHO05D003160 3.8e-07 58.9 67 47.8
Potri.009G030700 Populus trichocarpa HOM05D002515 ORTHO05D002722 3.8e-07 58.9 127 37.0
Rhsim13G0082900 Rhododendron simsii HOM05D002515 ORTHO05D002722 3.8e-07 58.9 86 45.3
Peaxi162Scf00094g00141 Petunia axillaris HOM05D002515 ORTHO05D002722 5.0e-07 58.5 87 40.2
Sabra01G0078100 Salix brachista HOM05D002082 ORTHO05D002130 5.0e-07 58.5 74 40.5
Cfa017383 Carpinus fangiana HOM05D002515 ORTHO05D002722 6.5e-07 58.2 110 40.0
MD05G1183600 Malus domestica HOM05D002769 ORTHO05D003160 8.5e-07 57.8 67 44.8
PGSC0003DMG400011004 Solanum tuberosum HOM05D002515 ORTHO05D002722 8.5e-07 57.8 70 45.7
ATR0680G229 Amborella trichopoda HOM05D002082 ORTHO05D002130 1.1e-06 57.4 73 46.6
CSS0011549 Camellia sinensis var. sinensis HOM05D002082 ORTHO05D002130 1.1e-06 57.4 68 44.1
COL.COLO4_34722 Corchorus olitorius HOM05D002769 ORTHO05D003160 1.1e-06 57.4 65 44.6
Thecc.03G279700 Theobroma cacao HOM05D002082 ORTHO05D002130 1.4e-06 57.0 148 28.4
Thecc.04G199500 Theobroma cacao HOM05D002082 ORTHO05D002130 1.4e-06 57.0 83 41.0
Manes.09G091300 Manihot esculenta HOM05D002515 ORTHO05D002722 2.5e-06 56.2 89 41.6
Carub.0008s0473 Capsella rubella HOM05D002769 ORTHO05D003160 3.2e-06 55.8 68 42.6
Lsat_1_v5_gn_9_12080 Lactuca sativa HOM05D002769 ORTHO05D003160 3.2e-06 55.8 67 43.3
Sed0024831 Sechium edule HOM05D002769 ORTHO05D003160 3.2e-06 55.8 67 44.8
THA.LOC104814547 Tarenaya hassleriana HOM05D002769 ORTHO05D003160 3.2e-06 55.8 66 43.9
ATR0787G113 Amborella trichopoda HOM05D002769 ORTHO05D003160 4.2e-06 55.5 67 46.3
FAN27G3465 Fragaria x ananassa HOM05D002769 ORTHO05D003160 4.2e-06 55.5 66 43.9
Glyma.10G126600 Glycine max HOM05D002515 ORTHO05D002722 4.2e-06 55.5 78 39.7
Lj6g0009284 Lotus japonicus HOM05D002515 ORTHO05D002722 4.2e-06 55.5 86 38.4
PGR083G2315 Punica granatum HOM05D002769 ORTHO05D003160 4.2e-06 55.5 67 44.8
QL12p032830 Quercus lobata HOM05D002082 ORTHO05D002130 4.2e-06 55.5 67 49.3
Sabra16G0144400 Salix brachista HOM05D002515 ORTHO05D002722 4.2e-06 55.5 127 33.9
GSVIVG01025600001 Vitis vinifera HOM05D002036 ORTHO05D001913 4.2e-06 55.5 111 33.3
Atru.chr5.1923 Acer truncatum HOM05D002769 ORTHO05D003160 5.5e-06 55.1 67 41.8
Actinidia20902 Actinidia chinensis HOM05D002082 ORTHO05D002130 5.5e-06 55.1 111 36.0
Cfa012223 Carpinus fangiana HOM05D002082 ORTHO05D002130 5.5e-06 55.1 106 37.7
ClCG09G009430 Citrullus lanatus HOM05D002769 ORTHO05D003160 5.5e-06 55.1 64 43.8
Haze_20788 Corylus avellana HOM05D002515 ORTHO05D002722 5.5e-06 55.1 110 39.1
Duzib212G0601 Durio zibethinus HOM05D002082 ORTHO05D002130 5.5e-06 55.1 118 33.1
FvH4_2g19940 Fragaria vesca HOM05D002769 ORTHO05D003160 5.5e-06 55.1 66 43.9
FAN14G0266 Fragaria x ananassa HOM05D002769 ORTHO05D003160 5.5e-06 55.1 66 43.9
FAN15G3258 Fragaria x ananassa HOM05D002769 ORTHO05D003160 5.5e-06 55.1 66 43.9
FAN24G0991 Fragaria x ananassa HOM05D002769 ORTHO05D003160 5.5e-06 55.1 66 43.9
Gohir.A07G202500 Gossypium hirsutum HOM05D002769 ORTHO05D003160 5.5e-06 55.1 69 40.6
Gohir.D07G208700 Gossypium hirsutum HOM05D002769 ORTHO05D003160 5.5e-06 55.1 69 40.6
Gorai.001G235600 Gossypium raimondii HOM05D002769 ORTHO05D003160 5.5e-06 55.1 69 40.6
TAR633G0965 Trochodendron aralioides HOM05D002769 ORTHO05D003160 5.5e-06 55.1 67 44.8
Ciclev10018694m.g Citrus clementina HOM05D002769 ORTHO05D003160 7.2e-06 54.7 68 41.2
Ciclev10018716m.g Citrus clementina HOM05D002082 ORTHO05D002130 7.2e-06 54.7 118 34.7
COL.COLO4_20185 Corchorus olitorius HOM05D002082 ORTHO05D002130 7.2e-06 54.7 72 38.9
Prupe.5G101000 Prunus persica HOM05D002082 ORTHO05D002130 7.2e-06 54.7 106 35.8
RcHm_v2.0_Chr6g0285601 Rosa chinensis HOM05D002769 ORTHO05D003160 7.2e-06 54.7 67 43.3
Sabra09G0021700 Salix brachista HOM05D002515 ORTHO05D002722 7.2e-06 54.7 125 36.0
Sp2g08680 Schrenkiella parvula HOM05D002769 ORTHO05D003160 7.2e-06 54.7 68 41.2
SGA_v2.0_scaffold35G14232 Striga asiatica HOM05D002515 ORTHO05D002722 7.2e-06 54.7 96 38.5
AL8G16250 Arabidopsis lyrata HOM05D002769 ORTHO05D003160 9.4e-06 54.3 69 42.0
CsaV3_7G025430 Cucumis sativus L. HOM05D002769 ORTHO05D003160 9.4e-06 54.3 64 43.8
DCAR_009231 Daucus carota HOM05D002515 ORTHO05D002722 9.4e-06 54.3 104 31.7
MD01G1060800 Malus domestica HOM05D002082 ORTHO05D002130 9.4e-06 54.3 67 43.3
Nn1g03080 Nelumbo nucifera HOM05D002769 ORTHO05D003160 9.4e-06 54.3 61 45.9
Prupe.8G209800 Prunus persica HOM05D002769 ORTHO05D003160 9.4e-06 54.3 123 31.7
Solyc10g084750.1 Solanum lycopersicum HOM05D002515 ORTHO05D002722 9.4e-06 54.3 109 37.6
THA.LOC104823434 Tarenaya hassleriana HOM05D002036 ORTHO05D001913 9.4e-06 54.3 69 43.5
TAR157G0003 Trochodendron aralioides HOM05D002036 ORTHO05D001913 9.4e-06 54.3 73 41.1
TAR636G3291 Trochodendron aralioides HOM05D002769 ORTHO05D003160 9.4e-06 54.3 67 46.3
GSVIVG01019747001 Vitis vinifera HOM05D002082 ORTHO05D002130 9.4e-06 54.3 120 34.2


User provided reference genes

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