Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0968 Trochodendron aralioides HOM05D003821 ORTHO05D004449 2.2e-48 195.3 97 100.0
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 2.4e-18 95.5 85 63.5
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 3.8e-16 88.2 87 57.5
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.9e-16 87.8 87 57.5
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 6.5e-16 87.4 86 57.0
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 8.4e-16 87.0 81 65.4
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 8.4e-16 87.0 117 44.4
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 1.1e-15 86.7 107 51.4
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 1.6e-14 82.8 103 50.5
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.7e-14 82.0 87 54.0
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 4.6e-14 81.3 82 57.3
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 7.9e-14 80.5 85 52.9
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 1.3e-13 79.7 73 63.0
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 1.8e-13 79.3 82 56.1
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 2.3e-13 79.0 105 46.7
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 2.3e-13 79.0 105 46.7
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 3.9e-13 78.2 100 49.0
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 3.9e-13 78.2 88 48.9
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 6.7e-13 77.4 84 51.2
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 8.7e-13 77.0 89 49.4
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 1.9e-12 75.9 80 57.5
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 4.3e-12 74.7 89 49.4
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 4.3e-12 74.7 89 51.7
Sc24g0003850 Simmondsia chinensis HOM05D000714 ORTHO05D000544 7.4e-12 73.9 77 58.4
arahy.Tifrunner.gnm1.ann1.LH51N9 Arachis hypogaea HOM05D003821 ORTHO05D004449 9.7e-12 73.6 95 49.5
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 9.7e-12 73.6 89 49.4
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.3e-11 73.2 73 56.2
Nitab4.5_0004438g0100 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.3e-11 73.2 91 48.4
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 1.3e-11 73.2 85 54.1
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 6.3e-11 70.9 88 45.5
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 6.3e-11 70.9 85 49.4
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 8.2e-11 70.5 86 50.0
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 1.1e-10 70.1 85 50.6
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 1.1e-10 70.1 85 49.4
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 1.1e-10 70.1 103 47.6
VMungo1309G1076 Vigna mungo HOM05D003821 ORTHO05D004449 1.4e-10 69.7 71 53.5
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 2.4e-10 68.9 113 38.9
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 3.1e-10 68.6 115 39.1
Peaxi162Scf00048g00209 Petunia axillaris HOM05D003821 ORTHO05D004449 3.1e-10 68.6 60 65.0
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 4.1e-10 68.2 112 42.0
vmacro15236 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 4.1e-10 68.2 111 44.1
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 5.3e-10 67.8 85 47.1
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 5.3e-10 67.8 89 47.2
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 5.3e-10 67.8 105 41.9
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 5.3e-10 67.8 85 48.2
Ah.04g153550 Amaranthus hybridus HOM05D003821 ORTHO05D004449 9.0e-10 67.0 78 55.1
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 9.0e-10 67.0 70 54.3
CsaV3_7G029090 Cucumis sativus L. HOM05D003821 ORTHO05D004449 9.0e-10 67.0 76 55.3
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 1.2e-09 66.6 92 44.6
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 1.2e-09 66.6 83 48.2
FAN17G0959 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.2e-09 66.6 70 55.7
Glyma.03G213100 Glycine max HOM05D003821 ORTHO05D004449 1.2e-09 66.6 92 44.6
Nitab4.5_0000570g0120 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.2e-09 66.6 75 50.7
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 1.5e-09 66.2 83 47.0
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 1.5e-09 66.2 83 47.0
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 1.5e-09 66.2 85 47.1
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 1.5e-09 66.2 78 52.6
Gorai.007G237400 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.5e-09 66.2 60 65.0
Nitab4.5_0003546g0070 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.5e-09 66.2 106 43.4
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 2.0e-09 65.9 63 60.3
Hma1.2p1_0209F.1_g088610 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 2.6e-09 65.5 54 70.4
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 3.4e-09 65.1 56 62.5
DCAR_013986 Daucus carota HOM05D003821 ORTHO05D004449 4.5e-09 64.7 104 44.2
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 4.5e-09 64.7 86 44.2
A01p21700 Brassica napus HOM05D000802 ORTHO05D013138 5.9e-09 64.3 73 53.4
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 5.9e-09 64.3 87 48.3
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 5.9e-09 64.3 76 47.4
Sabra08G0153500 Salix brachista HOM05D003821 ORTHO05D004449 1.0e-08 63.5 125 33.6
MELO3C032813.2 Cucumis melo HOM05D003821 ORTHO05D004449 1.7e-08 62.8 55 63.6
SGA_v2.0_scaffold428G51522 Striga asiatica HOM05D003821 ORTHO05D004449 2.9e-08 62.0 73 49.3
COL.COLO4_23375 Corchorus olitorius HOM05D003821 ORTHO05D004449 5.0e-08 61.2 44 72.7
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 5.0e-08 61.2 110 40.0
Medtr7g108610 Medicago truncatula HOM05D003821 ORTHO05D004449 1.1e-07 60.1 45 66.7
A08p11990 Brassica napus HOM05D003821 ORTHO05D004449 1.4e-07 59.7 79 50.6
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 1.9e-07 59.3 78 46.2
Rhsim04G0221500 Rhododendron simsii HOM05D003821 ORTHO05D004449 1.9e-07 59.3 51 60.8
Hund20554 Selenicereus undatus HOM05D003821 ORTHO05D004449 1.9e-07 59.3 117 39.3
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 2.5e-07 58.9 99 41.4
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 2.5e-07 58.9 111 38.7
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 2.5e-07 58.9 56 55.4
Gohir.D11G223400 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.2e-07 58.2 49 63.3
BcaC06g33446 Brassica carinata HOM05D003821 ORTHO05D004449 5.5e-07 57.8 82 47.6
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 7.2e-07 57.4 89 43.8
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 7.2e-07 57.4 78 47.4
PGSC0003DMG400022856 Solanum tuberosum HOM05D003821 ORTHO05D004449 9.3e-07 57.0 115 36.5
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 1.2e-06 56.6 46 65.2
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 1.2e-06 56.6 125 34.4
BcaC07g37933 Brassica carinata HOM05D003821 ORTHO05D004449 1.6e-06 56.2 75 50.7
Manes.05G064201 Manihot esculenta HOM05D003821 ORTHO05D004449 1.6e-06 56.2 45 64.4
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 2.7e-06 55.5 96 39.6
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 2.7e-06 55.5 86 43.0
SalBow2G1159 Salvia bowleyana HOM05D003821 ORTHO05D004449 2.7e-06 55.5 88 45.5
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 2.7e-06 55.5 92 43.5
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 3.6e-06 55.1 87 42.5
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 6.1e-06 54.3 92 41.3
RcHm_v2.0_Chr4g0422221 Rosa chinensis HOM05D003821 ORTHO05D004449 6.1e-06 54.3 42 64.3
CSS0027872 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 7.9e-06 53.9 45 62.2


User provided reference genes

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