Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0930 Trochodendron aralioides HOM05D004353 ORTHO05D004989 5.7e-122 441.0 239 100.0
TAR633G2112 Trochodendron aralioides HOM05D004353 ORTHO05D004989 6.1e-84 314.7 240 76.2
Aqoxy3G00280 Aquilegia oxysepala HOM05D004353 ORTHO05D004989 6.6e-54 214.9 239 55.2
Hma1.2p1_0017F.1_g011670 Hydrangea macrophylla HOM05D004353 ORTHO05D004989 1.9e-53 213.4 250 52.8
GSVIVG01038129001 Vitis vinifera HOM05D004353 ORTHO05D004989 3.3e-53 212.6 234 56.0
FAN07G2673 Fragaria x ananassa HOM05D004353 ORTHO05D004989 5.6e-53 211.8 265 51.7
PGR031G1729 Punica granatum HOM05D004353 ORTHO05D004989 7.3e-53 211.5 251 54.6
FAN12G3936 Fragaria x ananassa HOM05D004353 ORTHO05D004989 2.1e-52 209.9 199 61.3
FAN12G4128 Fragaria x ananassa HOM05D004353 ORTHO05D004989 2.1e-52 209.9 199 61.3
FAN17G1422 Fragaria x ananassa HOM05D004353 ORTHO05D004989 4.7e-52 208.8 265 50.9
FAN22G0682 Fragaria x ananassa HOM05D004353 ORTHO05D004989 6.2e-52 208.4 263 49.8
FvH4_4g10550 Fragaria vesca HOM05D004353 ORTHO05D004989 8.1e-52 208.0 199 60.8
RcHm_v2.0_Chr4g0406201 Rosa chinensis HOM05D004353 ORTHO05D004989 6.8e-51 204.9 264 49.6
PSO017G5600 Papaver somniferum HOM05D004353 ORTHO05D004989 3.4e-50 202.6 246 52.8
Prupe.1G205800 Prunus persica HOM05D004353 ORTHO05D004989 3.4e-50 202.6 253 52.2
Oeu043896.1 Olea europaea HOM05D004353 ORTHO05D004989 2.2e-49 199.9 228 48.7
PSO675G4101 Papaver somniferum HOM05D004353 ORTHO05D004989 3.2e-48 196.1 246 51.2
MD08G1231200 Malus domestica HOM05D004353 ORTHO05D004989 1.2e-47 194.1 255 46.7
Thecc.09G282100 Theobroma cacao HOM05D004353 ORTHO05D004989 1.2e-47 194.1 210 53.3
QL10p054510 Quercus lobata HOM05D004353 ORTHO05D004989 1.6e-47 193.7 246 50.4
Eucgr.A01325 Eucalyptus grandis HOM05D004353 ORTHO05D004989 2.1e-47 193.4 187 61.0
QL10p053348 Quercus lobata HOM05D004353 ORTHO05D004989 6.0e-47 191.8 246 50.4
Cfa015265 Carpinus fangiana HOM05D004353 ORTHO05D004989 3.9e-46 189.1 239 46.0
MD15G1424100 Malus domestica HOM05D004353 ORTHO05D004989 8.7e-46 188.0 259 47.9
Prupe.1G570000 Prunus persica HOM05D004353 ORTHO05D004989 1.5e-45 187.2 247 49.4
MBI08_g25559_MAGBIO Magnolia biondii HOM05D004353 ORTHO05D004989 2.5e-45 186.4 158 68.4
Sc05g0005560 Simmondsia chinensis HOM05D004353 ORTHO05D004989 2.8e-44 183.0 236 50.8
Peaxi162Scf00008g03715 Petunia axillaris HOM05D004353 ORTHO05D004989 1.1e-43 181.0 246 46.7
Gohir.A13G222400 Gossypium hirsutum HOM05D004353 ORTHO05D004989 1.4e-43 180.6 180 52.8
Cpa.g.sc9.354 Carica papaya HOM05D004353 ORTHO05D004989 4.0e-43 179.1 255 44.7
Gorai.013G257700 Gossypium raimondii HOM05D004353 ORTHO05D004989 4.0e-43 179.1 217 47.9
Gohir.D10G228800 Gossypium hirsutum HOM05D004353 ORTHO05D004989 6.9e-43 178.3 202 49.5
Gorai.011G261300 Gossypium raimondii HOM05D004353 ORTHO05D004989 6.9e-43 178.3 180 53.9
CiPaw.02G101000 Carya illinoinensis HOM05D004353 ORTHO05D004989 9.0e-43 177.9 246 50.0
Nitab4.5_0000214g0170 Nicotiana tabacum HOM05D004353 ORTHO05D004989 1.3e-41 174.1 245 47.8
Gorai.012G140500 Gossypium raimondii HOM05D004353 ORTHO05D004989 1.7e-41 173.7 171 55.6
ClCG03G006580 Citrullus lanatus HOM05D004353 ORTHO05D004989 6.4e-41 171.8 261 49.0
Cc04_g05110 Coffea canephora HOM05D004353 ORTHO05D004989 2.4e-40 169.9 259 45.9
COL.COLO4_19851 Corchorus olitorius HOM05D004353 ORTHO05D004989 2.4e-40 169.9 185 58.4
Glyma.07G165200 Glycine max HOM05D004353 ORTHO05D004989 2.4e-40 169.9 182 56.0
Glyma.09G118100 Glycine max HOM05D004353 ORTHO05D004989 2.4e-40 169.9 186 54.3
Gohir.D13G227200 Gossypium hirsutum HOM05D004353 ORTHO05D004989 2.4e-40 169.9 171 55.6
Lj2g0015848 Lotus japonicus HOM05D004353 ORTHO05D004989 3.2e-40 169.5 250 46.8
Nitab4.5_0000518g0010 Nicotiana tabacum HOM05D004353 ORTHO05D004989 3.2e-40 169.5 245 46.9
Sabra06G0098000 Salix brachista HOM05D004353 ORTHO05D004989 4.2e-40 169.1 175 54.3
MSTRG.16235 Avicennia marina HOM05D004353 ORTHO05D004989 5.4e-40 168.7 178 59.0
Atru.chr6.1925 Acer truncatum HOM05D004353 ORTHO05D004989 7.1e-40 168.3 237 42.6
CANSAT54G2783 Cannabis sativa HOM05D004353 ORTHO05D004989 9.3e-40 167.9 216 50.9
Carub.0004s2616 Capsella rubella HOM05D004353 ORTHO05D004989 9.3e-40 167.9 263 43.7
AT2G43630 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 1.2e-39 167.5 263 44.1
CAN.G162.60 Capsicum annuum HOM05D004353 ORTHO05D004989 2.1e-39 166.8 175 54.9
AUR62025025 Chenopodium quinoa HOM05D004353 ORTHO05D004989 2.1e-39 166.8 180 52.8
Manes.11G130500 Manihot esculenta HOM05D004353 ORTHO05D004989 2.1e-39 166.8 208 45.2
AL4G42450 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 2.7e-39 166.4 262 43.1
Migut.M00919 Erythranthe guttata HOM05D004353 ORTHO05D004989 2.7e-39 166.4 221 50.2
Potri.006G123800 Populus trichocarpa HOM05D004353 ORTHO05D004989 3.5e-39 166.0 178 52.8
Sp4g25730 Schrenkiella parvula HOM05D004353 ORTHO05D004989 7.8e-39 164.9 238 48.3
AUR62006505 Chenopodium quinoa HOM05D004353 ORTHO05D004989 1.3e-38 164.1 173 45.7
Thhalv10001554m.g Eutrema salsugineum HOM05D004353 ORTHO05D004989 3.0e-38 162.9 222 46.4
Phvul.003G023800 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 1.1e-37 161.0 189 50.8
VMungo1215G1727 Vigna mungo HOM05D004353 ORTHO05D004989 1.1e-37 161.0 259 44.0
CsaV3_1G036770 Cucumis sativus L. HOM05D004353 ORTHO05D004989 1.9e-37 160.2 251 46.6
Solyc04g054460.3 Solanum lycopersicum HOM05D004353 ORTHO05D004989 1.9e-37 160.2 247 47.4
CARHR138810 Cardamine hirsuta HOM05D004353 ORTHO05D004989 2.5e-37 159.8 222 46.4
Aa31LG1G25350 Aethionema arabicum HOM05D004353 ORTHO05D004989 3.3e-37 159.5 260 42.3
MELO3C002758.2 Cucumis melo HOM05D004353 ORTHO05D004989 3.3e-37 159.5 187 54.5
Sopen04g024280 Solanum pennellii HOM05D004353 ORTHO05D004989 3.3e-37 159.5 247 47.0
TWI63G0567 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 3.3e-37 159.5 249 42.2
Nn1g09685 Nelumbo nucifera HOM05D004353 ORTHO05D004989 5.6e-37 158.7 237 39.2
Sed0022603 Sechium edule HOM05D004353 ORTHO05D004989 7.3e-37 158.3 224 47.3
C04p70590 Brassica napus HOM05D004353 ORTHO05D004989 2.1e-36 156.8 203 46.8
Ah.03g147060 Amaranthus hybridus HOM05D004353 ORTHO05D004989 2.8e-36 156.4 199 47.2
RcHm_v2.0_Chr2g0115921 Rosa chinensis HOM05D004353 ORTHO05D004989 2.8e-36 156.4 188 54.8
THA.LOC104802322 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 2.8e-36 156.4 259 45.2
BraA04t18750Z Brassica rapa HOM05D004353 ORTHO05D004989 3.6e-36 156.0 187 50.3
BolC4t28561H Brassica oleracea HOM05D004353 ORTHO05D004989 4.8e-36 155.6 203 46.3
THA.LOC104803988 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 4.8e-36 155.6 240 42.9
BcaC02g07160 Brassica carinata HOM05D004353 ORTHO05D004989 1.1e-35 154.5 203 45.8
A04p32910 Brassica napus HOM05D004353 ORTHO05D004989 1.4e-35 154.1 188 48.4
Ciclev10021938m.g Citrus clementina HOM05D004353 ORTHO05D004989 1.4e-35 154.1 246 42.7
Atru.chr4.1388 Acer truncatum HOM05D004353 ORTHO05D004989 3.1e-35 152.9 239 42.3
TWI15G0091 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 5.3e-35 152.1 233 44.2
BcaB06g29332 Brassica carinata HOM05D004353 ORTHO05D004989 1.5e-34 150.6 203 49.8
Lalb_Chr10g0096191 Lupinus albus HOM05D004353 ORTHO05D004989 2.0e-34 150.2 237 47.7
Duzib168G0981 Durio zibethinus HOM05D004353 ORTHO05D004989 3.4e-34 149.4 209 41.6
arahy.Tifrunner.gnm1.ann1.WL5XYL Arachis hypogaea HOM05D004353 ORTHO05D004989 4.5e-34 149.1 254 44.1
Sp5g03540 Schrenkiella parvula HOM05D004353 ORTHO05D004989 5.8e-34 148.7 182 52.2
arahy.Tifrunner.gnm1.ann1.ZXP0UV Arachis hypogaea HOM05D004353 ORTHO05D004989 1.7e-33 147.1 254 40.9
Lalb_Chr02g0158251 Lupinus albus HOM05D004353 ORTHO05D004989 2.9e-33 146.4 247 47.0
EL10Ac6g15412 Beta vulgaris HOM05D004353 ORTHO05D004989 6.4e-33 145.2 179 55.9
ECA248G0230 Erigeron canadensis HOM05D004353 ORTHO05D004989 6.4e-33 145.2 192 49.0
DCAR_005473 Daucus carota HOM05D004353 ORTHO05D004989 8.4e-33 144.8 241 44.0
FAN19G0170 Fragaria x ananassa HOM05D004353 ORTHO05D004989 4.2e-32 142.5 231 46.3
FvH4_1g21910 Fragaria vesca HOM05D004353 ORTHO05D004989 1.2e-31 141.0 158 54.4
Sed0011106 Sechium edule HOM05D004353 ORTHO05D004989 1.2e-31 141.0 185 52.4
unitig_61.g26169 Utricularia gibba HOM05D004353 ORTHO05D004989 2.1e-31 140.2 179 48.6
ATR0743G161 Amborella trichopoda HOM05D004353 ORTHO05D004989 3.5e-31 139.4 178 51.7
AL5G41660 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 4.6e-31 139.0 194 54.6
Hund04296 Selenicereus undatus HOM05D004353 ORTHO05D004989 4.6e-31 139.0 178 47.2
Lalb_Chr21g0317861 Lupinus albus HOM05D004353 ORTHO05D004989 1.0e-30 137.9 223 47.1
BcaC07g40471 Brassica carinata HOM05D004353 ORTHO05D004989 3.0e-30 136.3 246 41.1
HanXRQChr10g0307981 Helianthus annuus HOM05D004353 ORTHO05D004989 5.1e-30 135.6 246 39.4
Lalb_Chr22g0353411 Lupinus albus HOM05D004353 ORTHO05D004989 8.7e-30 134.8 243 42.8
SalBow8G1390 Salvia bowleyana HOM05D004353 ORTHO05D004989 2.1e-28 130.2 239 42.3
AT3G59640 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 2.8e-28 129.8 233 47.2
Duzib150G0228 Durio zibethinus HOM05D004353 ORTHO05D004989 4.8e-28 129.0 210 41.0
FAN26G0137 Fragaria x ananassa HOM05D004353 ORTHO05D004989 6.2e-28 128.6 153 52.3
Dinv40298 Davidia involucrata HOM05D004353 ORTHO05D004989 8.1e-28 128.3 172 51.7
FAN28G0555 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.1e-27 127.9 153 56.9
BcaC07g40494 Brassica carinata HOM05D004353 ORTHO05D004989 1.4e-27 127.5 237 44.3
C08p34630 Brassica napus HOM05D004353 ORTHO05D004989 1.4e-27 127.5 237 44.3
BolC8t51065H Brassica oleracea HOM05D004353 ORTHO05D004989 1.4e-27 127.5 237 44.3
CDE05G3235 Ceratophyllum demersum HOM05D004353 ORTHO05D004989 5.3e-27 125.6 157 52.9
Zm00001eb184150 Zea mays HOM05D004353 ORTHO05D004989 9.0e-27 124.8 236 41.9
Atru.chr6.1923 Acer truncatum HOM05D004353 ORTHO05D004989 1.2e-26 124.4 105 54.3
A09p51910 Brassica napus HOM05D004353 ORTHO05D004989 1.5e-26 124.0 233 44.2
Lsat_1_v5_gn_5_149741 Lactuca sativa HOM05D004353 ORTHO05D004989 2.0e-26 123.6 177 45.8
Os02g0606000 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 2.6e-26 123.2 206 42.7
Haze_01374 Corylus avellana HOM05D004353 ORTHO05D004989 3.4e-26 122.9 300 37.0
BraA09t40627Z Brassica rapa HOM05D004353 ORTHO05D004989 4.5e-26 122.5 233 43.8
PGSC0003DMG400005514 Solanum tuberosum HOM05D004353 ORTHO05D004989 5.8e-26 122.1 158 53.2
Carub.0005s2635 Capsella rubella HOM05D004353 ORTHO05D004989 7.6e-26 121.7 206 47.6
Ca_17991_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 3.2e-24 116.3 183 39.3
HPP92_005597 Vanilla planifolia HOM05D004353 ORTHO05D004989 4.2e-24 115.9 217 38.7
Zm00001eb246630 Zea mays HOM05D004353 ORTHO05D004989 5.5e-24 115.5 235 36.2
Os04g0493300 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 1.6e-23 114.0 185 44.3
Ca_13736_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 2.1e-23 113.6 172 46.5
Gorai.012G140700 Gossypium raimondii HOM05D004353 ORTHO05D004989 3.5e-23 112.8 91 54.9
Ca_02292_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 1.0e-22 111.3 172 43.6
SHI23072 Sapria himalayana HOM05D004353 ORTHO05D004989 3.0e-22 109.8 165 50.3
Lj2g0004083 Lotus japonicus HOM05D004353 ORTHO05D004989 8.7e-22 108.2 162 51.2
Psat1g079080 Pisum sativum HOM05D004353 ORTHO05D004989 1.5e-21 107.5 172 45.9
HPP92_005578 Vanilla planifolia HOM05D004353 ORTHO05D004989 4.3e-21 105.9 168 42.9
MSTRG.19791 Avicennia marina HOM05D004353 ORTHO05D004989 9.6e-21 104.8 96 53.1
Actinidia06605 Actinidia chinensis HOM05D004353 ORTHO05D004989 1.6e-20 104.0 208 38.0
Psat6g042920 Pisum sativum HOM05D004353 ORTHO05D004989 1.6e-20 104.0 237 36.7
SGA_v2.0_scaffold1G00163 Striga asiatica HOM05D004353 ORTHO05D004989 6.2e-20 102.1 246 36.2
Nitab4.5_0001095g0110 Nicotiana tabacum HOM05D004353 ORTHO05D004989 8.2e-20 101.7 101 47.5
Medtr6g012760 Medicago truncatula HOM05D004353 ORTHO05D004989 2.4e-19 100.1 175 42.3
TPR.G8801 Trifolium pratense HOM05D004353 ORTHO05D004989 1.2e-18 97.8 239 35.1
Medtr1g030860 Medicago truncatula HOM05D004353 ORTHO05D004989 1.5e-18 97.4 183 39.9
arahy.Tifrunner.gnm1.ann1.35HMJH Arachis hypogaea HOM05D004353 ORTHO05D004989 2.0e-18 97.1 228 38.6
arahy.Tifrunner.gnm1.ann1.I4T7AK Arachis hypogaea HOM05D004353 ORTHO05D004989 2.0e-18 97.1 233 37.8
TPR.G36930 Trifolium pratense HOM05D004353 ORTHO05D004989 1.0e-17 94.7 161 46.0
VMungo0540G0595 Vigna mungo HOM05D004353 ORTHO05D004989 1.0e-17 94.7 176 44.9
Medtr8g077030 Medicago truncatula HOM05D000149 ORTHO05D004989 4.9e-17 92.4 245 37.6
C04p04620 Brassica napus HOM05D004353 ORTHO05D004989 3.5e-15 86.3 73 54.8
Glyma.09G032300 Glycine max HOM05D004353 ORTHO05D004989 6.0e-15 85.5 151 48.3
AUR62039440 Chenopodium quinoa HOM05D004353 ORTHO05D004989 1.3e-14 84.3 69 53.6
Gorai.013G194600 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.3e-14 83.6 162 36.4
Phvul.006G120600 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 2.3e-14 83.6 161 41.0
BcaB02g08913 Brassica carinata HOM05D004353 ORTHO05D004989 5.7e-13 79.0 160 35.0
Glyma.15G137300 Glycine max HOM05D004353 ORTHO05D004989 7.4e-13 78.6 198 40.9
Atru.chr4.262 Acer truncatum HOM05D004353 ORTHO05D004989 2.8e-12 76.6 100 62.0
BolC4t22093H Brassica oleracea HOM05D004353 ORTHO05D004989 3.7e-12 76.3 73 52.1
MD10G1168700 Malus domestica HOM05D004353 ORTHO05D004989 3.1e-11 73.2 121 36.4
BcaC02g12375 Brassica carinata HOM05D004353 ORTHO05D004989 1.5e-10 70.9 63 50.8
MBI08_g25557_MAGBIO Magnolia biondii HOM05D004353 ORTHO05D004989 1.3e-09 67.8 78 48.7
CARHR169980 Cardamine hirsuta HOM05D004353 ORTHO05D004989 1.1e-08 64.7 150 46.7


User provided reference genes

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