Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 7.6e-180 633.6 306 100.0
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 3.1e-157 558.5 302 89.1
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 1.1e-149 533.5 308 81.8
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 1.5e-146 523.1 297 82.5
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 2.5e-146 522.3 300 82.0
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 2.6e-143 512.3 305 79.3
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 5.7e-143 511.1 298 79.9
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 1.3e-142 510.0 302 79.1
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 3.7e-142 508.4 298 79.5
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 2.4e-141 505.8 303 80.5
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 2.4e-141 505.8 302 79.1
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 3.1e-141 505.4 302 79.1
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 2.7e-140 502.3 304 79.3
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 1.0e-139 500.4 300 78.3
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 1.7e-139 499.6 298 79.5
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 2.2e-139 499.2 306 76.5
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 2.2e-139 499.2 302 78.5
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 5.0e-139 498.0 300 78.0
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 6.5e-139 497.7 300 80.0
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 8.5e-139 497.3 302 78.1
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 1.5e-138 496.5 302 77.8
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 2.5e-138 495.7 300 78.3
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 3.2e-138 495.4 300 79.3
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 4.2e-138 495.0 303 76.6
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 7.2e-138 494.2 303 76.6
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 7.2e-138 494.2 299 76.6
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 2.1e-137 492.7 300 78.3
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 2.1e-137 492.7 302 76.5
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 2.7e-137 492.3 302 77.5
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 6.1e-137 491.1 302 75.2
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 6.1e-137 491.1 306 75.5
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 8.0e-137 490.7 306 75.5
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 1.0e-136 490.3 302 75.8
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 1.4e-136 490.0 305 76.4
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 1.8e-136 489.6 300 76.7
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 1.8e-136 489.6 305 75.4
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 2.3e-136 489.2 302 75.2
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 3.0e-136 488.8 302 76.2
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 5.2e-136 488.0 306 74.8
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 8.8e-136 487.3 303 75.2
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 1.2e-135 486.9 305 73.8
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 1.5e-135 486.5 302 76.2
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 1.5e-135 486.5 304 76.6
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 2.6e-135 485.7 302 75.5
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 9.8e-135 483.8 302 76.5
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 1.3e-134 483.4 303 73.9
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.3e-134 483.4 302 75.5
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 1.3e-134 483.4 299 74.2
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 1.7e-134 483.0 305 74.4
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 2.8e-134 482.3 299 74.9
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 2.8e-134 482.3 301 73.4
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 3.7e-134 481.9 302 73.5
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 4.8e-134 481.5 303 73.3
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 4.8e-134 481.5 302 76.5
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 4.8e-134 481.5 302 76.8
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 4.8e-134 481.5 305 73.1
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 6.3e-134 481.1 298 74.5
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 6.3e-134 481.1 305 73.1
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 1.8e-133 479.6 305 74.1
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 2.4e-133 479.2 305 73.4
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 2.4e-133 479.2 300 76.0
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 2.4e-133 479.2 306 73.9
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 3.1e-133 478.8 304 73.7
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 9.1e-133 477.2 298 74.8
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 9.1e-133 477.2 376 63.3
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 2.9e-131 472.2 303 73.6
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 5.0e-131 471.5 306 71.6
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 5.0e-131 471.5 299 72.6
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 1.5e-130 469.9 373 63.3
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 2.8e-129 465.7 306 74.2
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 4.7e-129 464.9 301 75.1
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 6.1e-129 464.5 300 73.0
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 6.1e-129 464.5 300 72.3
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 3.0e-128 462.2 301 74.4
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 4.0e-128 461.8 299 72.6
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 8.9e-128 460.7 306 72.5
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 1.5e-127 459.9 299 70.6
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 5.7e-127 458.0 305 69.8
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 7.5e-127 457.6 305 73.1
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 9.8e-127 457.2 303 71.0
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 1.3e-126 456.8 303 70.6
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.8e-126 455.7 303 70.3
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 8.3e-126 454.1 305 69.5
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 8.3e-126 454.1 338 67.5
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 4.1e-125 451.8 300 71.0
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 4.1e-125 451.8 304 69.7
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 4.1e-125 451.8 305 69.8
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 1.2e-124 450.3 299 70.2
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 1.2e-124 450.3 311 72.0
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 1.6e-124 449.9 300 68.7
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 4.5e-124 448.4 300 70.3
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 1.0e-123 447.2 310 68.7
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 1.3e-123 446.8 299 69.9
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 1.7e-123 446.4 300 69.3
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 3.8e-123 445.3 298 70.5
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 6.6e-123 444.5 298 69.8
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 2.5e-122 442.6 304 68.4
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 8.0e-121 437.6 327 64.8
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 1.2e-119 433.7 302 68.2
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.5e-119 433.3 310 67.4
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 5.8e-119 431.4 297 66.0
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 1.1e-117 427.2 269 75.8
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 1.4e-117 426.8 297 66.0
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 4.1e-117 425.2 305 67.5
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 1.1e-109 400.6 264 71.6
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.3e-107 393.7 266 68.4
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 2.6e-103 379.4 260 66.9
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.7e-99 366.7 238 71.4
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 3.6e-97 359.0 265 67.9
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 8.9e-96 354.4 216 75.0
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 4.9e-94 348.6 302 54.0
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 2.7e-92 342.8 300 56.3
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 5.1e-91 338.6 201 78.6
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 3.3e-90 335.9 290 55.5
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 1.9e-85 320.1 298 52.0
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 9.3e-85 317.8 300 54.0
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 3.3e-82 309.3 177 79.7
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 5.6e-82 308.5 177 79.7
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 4.0e-80 302.4 206 68.9
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 3.8e-70 269.2 179 72.6
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 2.5e-69 266.5 237 53.6
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 5.7e-66 255.4 181 70.2
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 1.9e-61 240.4 143 77.6
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 9.4e-53 211.5 179 56.4
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.2e-52 211.1 130 77.7
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 1.1e-50 204.5 170 57.6
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 5.7e-50 202.2 126 77.0
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.4e-45 187.6 107 81.3
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 9.4e-45 184.9 126 73.0
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 4.7e-44 182.6 133 68.4
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.5e-42 177.6 105 80.0
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.0e-42 177.2 133 69.2
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 1.4e-40 171.0 135 63.7
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 2.7e-36 156.8 122 63.9
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 1.1e-29 134.8 102 66.7
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 5.7e-18 95.9 52 84.6
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 7.5e-18 95.5 75 58.7


User provided reference genes

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