Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 0.0e+00 1079.3 525 100.0
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 3.7e-182 642.1 506 67.2
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 2.2e-150 536.6 506 58.3
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 1.9e-133 480.3 492 55.5
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 3.5e-132 476.1 504 54.2
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 7.3e-130 468.4 489 53.6
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 1.6e-129 467.2 497 54.9
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 6.2e-129 465.3 496 53.6
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 2.2e-126 456.8 469 55.0
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 4.9e-126 455.7 522 51.3
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 1.7e-123 447.2 492 51.4
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 6.6e-123 445.3 509 51.3
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 5.6e-122 442.2 504 50.6
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 1.2e-121 441.0 489 51.3
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 8.1e-121 438.3 517 50.5
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.3e-120 436.8 507 49.9
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 3.1e-120 436.4 507 50.3
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 4.0e-120 436.0 504 50.6
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 1.2e-119 434.5 504 51.2
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 2.9e-118 429.9 517 48.7
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 4.9e-118 429.1 503 49.9
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 6.4e-118 428.7 491 51.5
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 1.4e-117 427.6 457 52.7
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 1.6e-116 424.1 505 50.1
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 2.3e-115 420.2 517 48.7
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 7.3e-114 415.2 514 48.1
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 6.4e-110 402.1 522 47.3
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 3.2e-109 399.8 501 50.5
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 9.3e-109 398.3 483 48.2
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 1.2e-108 397.9 505 47.5
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 1.6e-108 397.5 496 46.8
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 1.0e-107 394.8 516 47.7
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 1.7e-107 394.0 519 47.8
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 8.7e-107 391.7 569 45.0
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 1.5e-106 391.0 520 48.8
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 7.3e-106 388.7 541 45.7
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 7.3e-106 388.7 528 46.2
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 1.6e-105 387.5 491 46.6
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 1.6e-105 387.5 491 47.0
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 3.6e-105 386.3 516 47.1
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 1.4e-104 384.4 527 44.8
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 5.3e-104 382.5 485 48.0
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 9.0e-104 381.7 493 47.3
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 7.6e-103 378.6 505 45.3
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 6.4e-102 375.6 513 45.0
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 2.7e-100 370.2 491 46.6
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 1.0e-99 368.2 484 48.3
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 2.3e-99 367.1 502 44.8
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 6.7e-99 365.5 507 46.2
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 5.6e-98 362.5 491 46.0
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 9.6e-98 361.7 508 45.1
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 3.1e-96 356.7 510 44.3
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 6.9e-96 355.5 494 45.3
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 1.2e-95 354.8 496 47.0
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 2.0e-95 354.0 485 45.2
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 3.4e-95 353.2 509 45.4
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 9.9e-95 351.7 506 43.7
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 1.7e-94 350.9 504 45.6
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 2.2e-94 350.5 493 44.6
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 2.2e-94 350.5 526 43.7
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 4.9e-94 349.4 500 44.8
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 2.4e-93 347.1 511 45.0
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 3.2e-93 346.7 437 47.6
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 7.1e-93 345.5 371 53.6
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 7.1e-93 345.5 435 49.0
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 2.7e-92 343.6 509 43.6
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 2.7e-92 343.6 507 43.8
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 2.7e-92 343.6 494 44.7
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 3.5e-92 343.2 525 44.6
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 6.0e-92 342.4 481 43.5
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 7.9e-92 342.0 513 44.8
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 1.8e-91 340.9 514 42.6
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 2.3e-91 340.5 478 45.2
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 2.3e-91 340.5 497 44.1
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 3.0e-91 340.1 493 45.0
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 5.1e-91 339.3 514 43.4
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 3.3e-90 336.7 480 44.4
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 9.6e-90 335.1 502 43.6
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 1.3e-89 334.7 505 42.2
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.6e-89 334.3 515 43.9
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 1.6e-89 334.3 480 44.2
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 4.8e-89 332.8 435 48.0
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 6.2e-89 332.4 552 42.4
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 3.1e-88 330.1 505 45.0
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 9.0e-88 328.6 482 43.4
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 9.0e-88 328.6 505 42.0
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 1.5e-87 327.8 477 44.0
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 1.5e-87 327.8 477 44.0
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 3.4e-87 326.6 476 43.5
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 7.6e-87 325.5 494 42.9
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 1.3e-86 324.7 485 45.4
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 8.4e-86 322.0 509 42.8
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 4.2e-85 319.7 506 41.7
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 7.1e-85 318.9 542 41.1
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 9.3e-85 318.5 517 42.2
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 1.6e-84 317.8 443 45.8
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 3.5e-84 316.6 483 42.4
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 6.7e-83 312.4 518 41.9
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 3.3e-82 310.1 486 42.6
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 5.7e-82 309.3 492 41.1
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 2.1e-81 307.4 486 42.6
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 3.7e-81 306.6 490 42.4
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 3.7e-81 306.6 424 46.0
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 1.8e-80 304.3 491 42.2
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.8e-80 304.3 486 41.2
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 2.4e-80 303.9 391 46.0
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 1.5e-79 301.2 496 40.7
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 1.3e-78 298.1 485 41.9
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 3.8e-78 296.6 501 41.9
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 2.5e-77 293.9 484 41.7
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 4.3e-74 283.1 494 40.9
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 3.7e-73 280.0 499 38.9
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.1e-72 278.5 181 80.7
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 2.4e-72 277.3 486 37.9
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 4.1e-72 276.6 232 62.5
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 7.2e-69 265.8 498 37.6
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 3.9e-67 260.0 500 37.6
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 8.2e-65 252.3 413 41.6
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 6.5e-62 242.7 498 35.1
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 2.4e-56 224.2 504 34.7
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 9.7e-50 202.2 185 61.6
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 1.7e-49 201.4 242 50.0
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 2.0e-47 194.5 525 31.6
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 2.0e-42 177.9 331 39.0
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 4.2e-37 160.2 450 30.2
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 3.6e-36 157.1 328 35.1
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 2.6e-34 151.0 97 77.3
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 2.4e-32 144.4 417 30.2
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 3.6e-28 130.6 122 58.2
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 1.6e-23 115.2 190 34.7
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 3.3e-21 107.5 131 53.4
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 3.5e-15 87.4 144 38.9
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 1.6e-12 78.6 97 44.3
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 6.2e-12 76.6 87 52.9
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 7.5e-10 69.7 84 41.7


User provided reference genes

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