Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0873 Trochodendron aralioides HOM05D006888 ORTHO05D008371 1.1e-121 441.4 220 100.0
Nn1g08113 Nelumbo nucifera HOM05D006888 ORTHO05D008371 2.3e-58 231.1 225 59.6
CSS0014440 Camellia sinensis var. sinensis HOM05D006888 ORTHO05D008371 3.1e-55 220.7 191 60.2
CSS0050387 Camellia sinensis var. sinensis HOM05D006888 ORTHO05D008371 3.6e-51 207.2 167 62.9
Hma1.2p1_0472F.1_g160001 Hydrangea macrophylla HOM05D006888 ORTHO05D008371 1.0e-50 205.7 190 55.8
CDE05G0641 Ceratophyllum demersum HOM05D002225 ORTHO05D002271 2.8e-48 197.6 178 54.5
Cfa006701 Carpinus fangiana HOM05D006888 ORTHO05D008371 1.6e-46 191.8 180 55.0
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 1.7e-45 188.3 180 53.9
Actinidia35523 Actinidia chinensis HOM05D006888 ORTHO05D008371 5.0e-45 186.8 191 52.9
Nitab4.5_0000368g0090 Nicotiana tabacum HOM05D006888 ORTHO05D008371 8.6e-45 186.0 173 53.8
GSVIVG01031237001 Vitis vinifera HOM05D006888 ORTHO05D008371 1.1e-44 185.7 186 51.6
Sc16g0009020 Simmondsia chinensis HOM05D006888 ORTHO05D008371 3.3e-44 184.1 180 50.0
Duzib177G0618 Durio zibethinus HOM05D006888 ORTHO05D008371 5.6e-44 183.3 168 56.0
Prupe.7G165800 Prunus persica HOM05D006888 ORTHO05D008371 1.6e-43 181.8 157 57.3
Ca_03033_v3 Cicer arietinum L. HOM05D006888 ORTHO05D008371 1.4e-42 178.7 173 52.6
Peaxi162Scf00673g00033 Petunia axillaris HOM05D006888 ORTHO05D008371 1.8e-42 178.3 173 51.4
Glyma.11G103200 Glycine max HOM05D006888 ORTHO05D008371 5.2e-42 176.8 158 55.7
Gohir.A11G273300 Gossypium hirsutum HOM05D006888 ORTHO05D008371 2.6e-41 174.5 188 51.6
Gorai.007G306300 Gossypium raimondii HOM05D006888 ORTHO05D008371 3.4e-41 174.1 188 51.1
CAN.G1715.1 Capsicum annuum HOM05D006888 ORTHO05D008371 4.4e-41 173.7 186 50.5
Medtr4g108060 Medicago truncatula HOM05D006888 ORTHO05D008371 9.8e-41 172.6 159 54.7
Phvul.002G058500 Phaseolus vulgaris HOM05D006888 ORTHO05D008371 9.8e-41 172.6 159 52.8
PGSC0003DMG400002802 Solanum tuberosum HOM05D006888 ORTHO05D008371 9.8e-41 172.6 187 48.1
CiPaw.08G155700 Carya illinoinensis HOM05D006888 ORTHO05D008371 1.3e-40 172.2 179 51.4
Gohir.D11G283400 Gossypium hirsutum HOM05D006888 ORTHO05D008371 1.3e-40 172.2 188 50.5
MELO3C004188.2 Cucumis melo HOM05D006888 ORTHO05D008371 2.2e-40 171.4 178 53.4
Medtr4g074390 Medicago truncatula HOM05D006888 ORTHO05D008371 3.7e-40 170.6 159 54.1
Solyc01g100450.1 Solanum lycopersicum HOM05D006888 ORTHO05D008371 3.7e-40 170.6 187 48.1
Manes.03G083400 Manihot esculenta HOM05D006888 ORTHO05D008371 6.4e-40 169.9 180 53.3
QL03p013638 Quercus lobata HOM05D006888 ORTHO05D008371 8.3e-40 169.5 181 50.3
Potri.005G014500 Populus trichocarpa HOM05D006888 ORTHO05D008371 1.8e-39 168.3 157 53.5
QL03p039859 Quercus lobata HOM05D006888 ORTHO05D008371 1.8e-39 168.3 181 50.3
Sopen01g043970 Solanum pennellii HOM05D006888 ORTHO05D008371 2.4e-39 167.9 186 47.3
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 5.4e-39 166.8 199 48.2
CsaV3_2G007050 Cucumis sativus L. HOM05D006888 ORTHO05D008371 5.4e-39 166.8 178 52.2
Psat5g190440 Pisum sativum HOM05D006888 ORTHO05D008371 5.4e-39 166.8 167 50.9
Psat5g196040 Pisum sativum HOM05D006888 ORTHO05D008371 5.4e-39 166.8 156 51.9
CANSAT54G0476 Cannabis sativa HOM05D006888 ORTHO05D008371 7.0e-39 166.4 175 51.4
VMungo1215G1495 Vigna mungo HOM05D006888 ORTHO05D008371 9.2e-39 166.0 160 51.9
arahy.Tifrunner.gnm1.ann1.8HC1KC Arachis hypogaea HOM05D006888 ORTHO05D008371 1.2e-38 165.6 165 49.1
ClCG02G014950 Citrullus lanatus HOM05D006888 ORTHO05D008371 1.2e-38 165.6 178 52.2
MD02G1110600 Malus domestica HOM05D006888 ORTHO05D008371 1.6e-38 165.2 165 49.7
RcHm_v2.0_Chr2g0099761 Rosa chinensis HOM05D006888 ORTHO05D008371 1.6e-38 165.2 202 46.0
TPR.G21561 Trifolium pratense HOM05D006888 ORTHO05D008371 2.0e-38 164.9 165 50.3
Aqoxy3G04232 Aquilegia oxysepala HOM05D006888 ORTHO05D008371 3.5e-38 164.1 225 45.3
arahy.Tifrunner.gnm1.ann1.8QK61L Arachis hypogaea HOM05D006888 ORTHO05D008371 7.8e-38 162.9 173 46.8
EL10Ac4g09447 Beta vulgaris HOM05D006888 ORTHO05D008371 7.8e-38 162.9 194 43.3
Ciclev10003346m.g Citrus clementina HOM05D006888 ORTHO05D008371 1.0e-37 162.5 180 51.7
Lj3g0005449 Lotus japonicus HOM05D006888 ORTHO05D008371 1.3e-37 162.2 165 50.3
TWI56G0663 Tripterygium wilfordii HOM05D006888 ORTHO05D008371 1.1e-36 159.1 180 48.9
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 1.5e-36 158.7 167 50.9
Lalb_Chr01g0001501 Lupinus albus HOM05D006888 ORTHO05D008371 1.2e-35 155.6 173 46.2
Oeu064824.1 Olea europaea HOM05D006888 ORTHO05D008371 1.6e-35 155.2 167 48.5
Lsat_1_v5_gn_7_74401 Lactuca sativa HOM05D006888 ORTHO05D008371 4.7e-35 153.7 175 46.9
C05p07930 Brassica napus HOM05D006888 ORTHO05D008371 5.2e-34 150.2 160 50.0
Psat5g195760 Pisum sativum HOM05D006888 ORTHO05D008371 2.0e-33 148.3 165 48.5
CARHR009830 Cardamine hirsuta HOM05D006888 ORTHO05D008371 3.4e-33 147.5 162 48.8
Aa31LG1G5110 Aethionema arabicum HOM05D006888 ORTHO05D008371 4.4e-33 147.1 159 49.1
HanXRQChr02g0059161 Helianthus annuus HOM05D006888 ORTHO05D008371 4.4e-33 147.1 163 45.4
BolC5t29545H Brassica oleracea HOM05D006888 ORTHO05D008371 5.8e-33 146.7 160 49.4
Carub.0001s0920 Capsella rubella HOM05D006888 ORTHO05D008371 7.5e-33 146.4 165 47.3
Thhalv10009487m.g Eutrema salsugineum HOM05D006888 ORTHO05D008371 7.5e-33 146.4 163 49.7
SGA_v2.0_scaffold5G02782 Striga asiatica HOM05D006888 ORTHO05D008371 7.5e-33 146.4 184 45.7
AT1G09820 Arabidopsis thaliana HOM05D006888 ORTHO05D008371 1.7e-32 145.2 162 47.5
RcHm_v2.0_Chr3g0457031 Rosa chinensis HOM05D006888 ORTHO05D008371 4.9e-32 143.7 166 46.4
THA.LOC104820294 Tarenaya hassleriana HOM05D006888 ORTHO05D008371 4.1e-31 140.6 160 49.4
AL1G20420 Arabidopsis lyrata HOM05D006888 ORTHO05D008371 5.4e-31 140.2 179 43.0
Hma1.2p1_0052F.1_g030800 Hydrangea macrophylla HOM05D006888 ORTHO05D008371 7.0e-31 139.8 106 65.1
Sp1g08450 Schrenkiella parvula HOM05D006888 ORTHO05D008371 9.2e-31 139.4 160 47.5
FAN19G0192 Fragaria x ananassa HOM05D006888 ORTHO05D008371 1.6e-30 138.7 181 42.5
FAN28G0085 Fragaria x ananassa HOM05D006888 ORTHO05D008371 1.6e-30 138.7 181 42.5
SalBow3G0195 Salvia bowleyana HOM05D006888 ORTHO05D008371 1.6e-30 138.7 192 42.7
FvH4_1g12100 Fragaria vesca HOM05D006888 ORTHO05D008371 2.7e-30 137.9 165 43.6
FAN19G1999 Fragaria x ananassa HOM05D006888 ORTHO05D008371 3.5e-30 137.5 165 43.6
Psat5g177360 Pisum sativum HOM05D006888 ORTHO05D008371 3.5e-30 137.5 168 45.8
Migut.K00794 Erythranthe guttata HOM05D006888 ORTHO05D008371 6.0e-30 136.7 169 44.4
BraA06t23865Z Brassica rapa HOM05D006888 ORTHO05D008371 1.7e-29 135.2 163 47.9
FvH4_6g07430 Fragaria vesca HOM05D006888 ORTHO05D008371 3.0e-29 134.4 182 40.7
FAN26G0552 Fragaria x ananassa HOM05D006888 ORTHO05D008371 3.9e-29 134.0 181 42.0
FAN23G2816 Fragaria x ananassa HOM05D006888 ORTHO05D008371 8.6e-29 132.9 181 40.9
FAN14G0975 Fragaria x ananassa HOM05D006888 ORTHO05D008371 1.9e-28 131.7 182 39.6
A06p06540 Brassica napus HOM05D006888 ORTHO05D008371 2.5e-28 131.3 163 46.6
Psat5g190520 Pisum sativum HOM05D006888 ORTHO05D008371 2.5e-28 131.3 165 43.0
Atru.BG.136.p Acer truncatum HOM05D006888 ORTHO05D008371 9.5e-28 129.4 106 64.2
BcaC05g24842 Brassica carinata HOM05D006888 ORTHO05D008371 1.1e-26 125.9 159 45.3
Lj5A334T57 Lonicera japonica HOM05D006888 ORTHO05D008371 5.2e-26 123.6 164 40.9
PGR083G0380 Punica granatum HOM05D006888 ORTHO05D008371 5.2e-26 123.6 117 55.6
Psat7g173680 Pisum sativum HOM05D006888 ORTHO05D008371 2.0e-25 121.7 138 46.4
EL10Ac4g09424 Beta vulgaris HOM05D006888 ORTHO05D008371 7.5e-25 119.8 138 44.9
SEGI_04891 Sequoiadendron giganteum HOM05D006888 ORTHO05D008371 2.7e-22 111.3 158 34.8
AUR62000398 Chenopodium quinoa HOM05D006888 ORTHO05D008371 2.8e-19 101.3 111 49.5
AUR62006754 Chenopodium quinoa HOM05D006888 ORTHO05D008371 3.6e-19 100.9 111 49.5
SHI18058 Sapria himalayana HOM05D006888 ORTHO05D008371 3.6e-19 100.9 158 39.9
Dinv24442 Davidia involucrata HOM05D006888 ORTHO05D008371 6.8e-18 96.7 86 59.3
Ah.06g195940 Amaranthus hybridus HOM05D006888 ORTHO05D008371 1.5e-17 95.5 92 53.3
vmacro01561 Vaccinium macrocarpon HOM05D006888 ORTHO05D008371 3.4e-17 94.4 67 71.6
ClCG00G002450 Citrullus lanatus HOM05D006888 ORTHO05D008371 9.2e-15 86.3 66 63.6
HPP92_008224 Vanilla planifolia HOM05D006888 ORTHO05D008371 2.7e-14 84.7 160 36.2
Thecc.05G322800 Theobroma cacao HOM05D006888 ORTHO05D008371 1.3e-13 82.4 80 47.5
Thhalv10000737m.g Eutrema salsugineum HOM05D006888 ORTHO05D008371 3.3e-12 77.8 83 53.0
FAN02G2736 Fragaria x ananassa HOM05D006888 ORTHO05D008371 2.1e-11 75.1 181 29.3
Hma1.2p1_0472F.1_g160010 Hydrangea macrophylla HOM05D006888 ORTHO05D008371 2.1e-11 75.1 44 81.8
Hma1.2p1_0472F.1_g160023 Hydrangea macrophylla HOM05D006888 ORTHO05D008371 2.1e-11 75.1 44 81.8
SEGI_21536 Sequoiadendron giganteum HOM05D007639 ORTHO05D009509 3.6e-11 74.3 159 28.3
Phvul.004G009341 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 8.1e-11 73.2 226 25.2
Lalb_Chr05g0225641 Lupinus albus HOM05D006888 ORTHO05D008371 1.4e-10 72.4 131 33.6
Phvul.004G009809 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.8e-10 72.0 226 25.2
Sabra05G0011500 Salix brachista HOM05D006888 ORTHO05D008371 1.8e-10 72.0 46 71.7
Phvul.004G009900 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 6.9e-10 70.1 226 25.2
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 9.0e-10 69.7 159 25.8
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 1.2e-09 69.3 158 23.4
ECA236G2032 Erigeron canadensis HOM05D004601 ORTHO05D005806 1.2e-09 69.3 82 43.9
Nitab4.5_0004873g0030 Nicotiana tabacum HOM05D006888 ORTHO05D008371 1.2e-09 69.3 45 71.1
CANSAT64G1792 Cannabis sativa HOM05D007358 ORTHO05D009117 1.5e-09 68.9 148 27.0
CiPaw.03G042400 Carya illinoinensis HOM05D007358 ORTHO05D009117 1.5e-09 68.9 145 25.5
DCAR_005421 Daucus carota HOM05D006888 ORTHO05D008371 1.5e-09 68.9 45 71.1
Thecc.05G322900 Theobroma cacao HOM05D006888 ORTHO05D008371 1.5e-09 68.9 44 72.7
Cc09_g03920 Coffea canephora HOM05D007358 ORTHO05D009117 2.6e-09 68.2 170 24.7
THA.LOC104805375 Tarenaya hassleriana HOM05D007358 ORTHO05D009117 4.4e-09 67.4 146 26.7
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 5.8e-09 67.0 226 24.3
Potri.017G071600 Populus trichocarpa HOM05D007358 ORTHO05D009117 9.9e-09 66.2 199 23.6
Sabra17G0060800 Salix brachista HOM05D007358 ORTHO05D009117 9.9e-09 66.2 144 26.4
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 1.3e-08 65.9 151 26.5
Haze_14729 Corylus avellana HOM05D007358 ORTHO05D009117 1.3e-08 65.9 145 24.8
Migut.F01873 Erythranthe guttata HOM05D007358 ORTHO05D009117 1.3e-08 65.9 211 23.7
PGR142G1723 Punica granatum HOM05D007358 ORTHO05D009117 1.3e-08 65.9 146 26.0
Cc02_g35010 Coffea canephora HOM05D006888 ORTHO05D008371 2.2e-08 65.1 45 68.9
Phvul.003G017200 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 2.2e-08 65.1 227 24.2
Potri.014G040200 Populus trichocarpa HOM05D007639 ORTHO05D009509 2.2e-08 65.1 161 26.1
VMungo0464G1987 Vigna mungo HOM05D007358 ORTHO05D009117 2.2e-08 65.1 149 24.8
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 2.9e-08 64.7 151 26.5
MD09G1028300 Malus domestica HOM05D007358 ORTHO05D009117 2.9e-08 64.7 211 24.6
Manes.17G021400 Manihot esculenta HOM05D007358 ORTHO05D009117 2.9e-08 64.7 149 28.2
Ciclev10018361m.g Citrus clementina HOM05D007358 ORTHO05D009117 3.8e-08 64.3 145 26.9
RcHm_v2.0_Chr2g0173011 Rosa chinensis HOM05D007358 ORTHO05D009117 3.8e-08 64.3 194 26.3
TPR.G14066 Trifolium pratense HOM05D007358 ORTHO05D009117 3.8e-08 64.3 148 24.3
Gorai.009G205400 Gossypium raimondii HOM05D007639 ORTHO05D009509 8.4e-08 63.2 160 26.2
Medtr6g005000 Medicago truncatula HOM05D007358 ORTHO05D009117 8.4e-08 63.2 171 23.4
Gohir.D05G200100 Gossypium hirsutum HOM05D007639 ORTHO05D009509 1.1e-07 62.8 160 26.2
Prupe.3G290200 Prunus persica HOM05D007358 ORTHO05D009117 1.1e-07 62.8 232 25.4
SalBow6G1669 Salvia bowleyana HOM05D007358 ORTHO05D009117 1.1e-07 62.8 137 27.7
Glyma.05G004200 Glycine max HOM05D007358 ORTHO05D009117 1.4e-07 62.4 149 25.5
Psat1g055280 Pisum sativum HOM05D007358 ORTHO05D009117 1.4e-07 62.4 129 25.6
Eucgr.A00652 Eucalyptus grandis HOM05D006888 ORTHO05D008371 1.9e-07 62.0 45 60.0
THA.LOC104813851 Tarenaya hassleriana HOM05D007639 ORTHO05D009509 1.9e-07 62.0 162 25.9
FvH4_5g31860 Fragaria vesca HOM05D007358 ORTHO05D009117 2.4e-07 61.6 233 24.5
Sed0015079 Sechium edule HOM05D007358 ORTHO05D009117 2.4e-07 61.6 148 24.3
Atru.BG.30.p Acer truncatum HOM05D007358 ORTHO05D009117 3.2e-07 61.2 148 27.7
CAN.G322.19 Capsicum annuum HOM05D006858 ORTHO05D008767 3.2e-07 61.2 166 25.9
CDE04G1234 Ceratophyllum demersum HOM05D007358 ORTHO05D009117 3.2e-07 61.2 199 23.1
TWI60G0667 Tripterygium wilfordii HOM05D007639 ORTHO05D009509 3.2e-07 61.2 160 25.6
ClCG09G019220 Citrullus lanatus HOM05D007358 ORTHO05D009117 4.2e-07 60.8 147 23.1
SGA_v2.0_scaffold122G33180 Striga asiatica HOM05D007358 ORTHO05D009117 4.2e-07 60.8 139 26.6
BcaB06g27500 Brassica carinata HOM05D007358 ORTHO05D009117 5.4e-07 60.5 144 24.3
CsaV3_5G027190 Cucumis sativus L. HOM05D007358 ORTHO05D009117 5.4e-07 60.5 147 23.1
CsaV3_6G009550 Cucumis sativus L. HOM05D006931 ORTHO05D008782 5.4e-07 60.5 147 27.2
Duzib093G1018 Durio zibethinus HOM05D007639 ORTHO05D009509 7.1e-07 60.1 163 25.8
HanXRQChr17g0537601 Helianthus annuus HOM05D006931 ORTHO05D008782 7.1e-07 60.1 147 26.5
Sp1g17190 Schrenkiella parvula HOM05D007639 ORTHO05D009509 7.1e-07 60.1 160 25.6
CiPaw.15G071600 Carya illinoinensis HOM05D007639 ORTHO05D009509 9.3e-07 59.7 163 23.9
MELO3C025970.2 Cucumis melo HOM05D006931 ORTHO05D008782 9.3e-07 59.7 147 26.5
SEGI_29272 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 9.3e-07 59.7 173 26.0
TWI12G0702 Tripterygium wilfordii HOM05D007358 ORTHO05D009117 1.2e-06 59.3 143 25.2
ClCG02G009270 Citrullus lanatus HOM05D006931 ORTHO05D008782 1.6e-06 58.9 148 26.4
Eucgr.I01754 Eucalyptus grandis HOM05D007358 ORTHO05D009117 1.6e-06 58.9 206 23.3
HanXRQChr04g0126531 Helianthus annuus HOM05D006931 ORTHO05D008782 1.6e-06 58.9 147 26.5
AL1G31880 Arabidopsis lyrata HOM05D007639 ORTHO05D009509 2.1e-06 58.5 160 23.1
Thhalv10006776m.g Eutrema salsugineum HOM05D007639 ORTHO05D009509 2.1e-06 58.5 160 25.0
Lj2g0013463 Lotus japonicus HOM05D007358 ORTHO05D009117 2.7e-06 58.2 149 24.8
Oeu037939.3 Olea europaea HOM05D007358 ORTHO05D009117 2.7e-06 58.2 128 26.6
Thecc.07G187000 Theobroma cacao HOM05D007291 ORTHO05D009038 2.7e-06 58.2 167 23.4
BcaC07g38995 Brassica carinata HOM05D007639 ORTHO05D009509 3.5e-06 57.8 160 26.2
BolC8t49556H Brassica oleracea HOM05D007639 ORTHO05D009509 3.5e-06 57.8 160 26.2
CARHR019880 Cardamine hirsuta HOM05D007639 ORTHO05D009509 3.5e-06 57.8 160 25.0
Cpa.g.sc207.2 Carica papaya HOM05D007639 ORTHO05D009509 3.5e-06 57.8 173 23.7
Lalb_Chr24g0394951 Lupinus albus HOM05D007358 ORTHO05D009117 4.6e-06 57.4 147 23.8
QL09p028535 Quercus lobata HOM05D007639 ORTHO05D009509 4.6e-06 57.4 164 23.2
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 6.0e-06 57.0 131 25.2
A08p29890 Brassica napus HOM05D007639 ORTHO05D009509 6.0e-06 57.0 160 25.6
CARHR261620 Cardamine hirsuta HOM05D007358 ORTHO05D009117 6.0e-06 57.0 207 21.3
Thhalv10027688m.g Eutrema salsugineum HOM05D007358 ORTHO05D009117 6.0e-06 57.0 136 24.3
Manes.05G164100 Manihot esculenta HOM05D007639 ORTHO05D009509 6.0e-06 57.0 159 25.8
BraA08t34924Z Brassica rapa HOM05D007639 ORTHO05D009509 7.8e-06 56.6 160 25.6


User provided reference genes

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