Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0854 Trochodendron aralioides HOM05D000604 ORTHO05D004512 3.4e-131 471.9 273 100.0
TAR633G1789 Trochodendron aralioides HOM05D000604 ORTHO05D004512 5.2e-71 271.9 161 86.3
TAR633G2382 Trochodendron aralioides HOM05D000604 ORTHO05D004512 1.5e-70 270.4 161 85.7
CSS0037056 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D004512 1.7e-69 266.9 168 80.4
CSS0048299 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D004512 1.7e-69 266.9 168 80.4
CSS0015734 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D004512 1.4e-68 263.8 165 80.6
Rhsim05G0146600 Rhododendron simsii HOM05D000604 ORTHO05D004512 1.5e-65 253.8 211 62.6
Dinv01785 Davidia involucrata HOM05D000604 ORTHO05D004512 6.2e-64 248.4 163 77.3
Hma1.2p1_0071F.1_g037955 Hydrangea macrophylla HOM05D000604 ORTHO05D004512 2.3e-63 246.5 160 75.6
Nn4g26073 Nelumbo nucifera HOM05D000604 ORTHO05D004512 3.1e-63 246.1 217 76.5
Hma1.2p1_0702F.1_g206100 Hydrangea macrophylla HOM05D000604 ORTHO05D004512 6.4e-61 238.4 216 57.9
vmacro19657 Vaccinium macrocarpon HOM05D000604 ORTHO05D004512 1.4e-60 237.3 155 76.1
GSVIVG01020870001 Vitis vinifera HOM05D000604 ORTHO05D004512 1.4e-60 237.3 161 74.5
Nn3g21243 Nelumbo nucifera HOM05D000604 ORTHO05D004512 2.4e-60 236.5 165 72.1
Aqoxy3G00886 Aquilegia oxysepala HOM05D000604 ORTHO05D004512 1.0e-58 231.1 165 71.5
Hund07022 Selenicereus undatus HOM05D000604 ORTHO05D004512 8.6e-58 228.0 163 71.2
Atru.chr12.650 Acer truncatum HOM05D000604 ORTHO05D004512 1.5e-57 227.3 166 68.7
Atru.chr12.677 Acer truncatum HOM05D000604 ORTHO05D004512 1.5e-57 227.3 166 68.7
CiPaw.01G204800 Carya illinoinensis HOM05D000604 ORTHO05D004512 3.3e-57 226.1 162 72.8
Aqoxy1G02180 Aquilegia oxysepala HOM05D000604 ORTHO05D004512 5.6e-57 225.3 165 71.5
ClCG03G016990 Citrullus lanatus HOM05D000604 ORTHO05D004512 2.1e-56 223.4 166 71.1
TWI38G0373 Tripterygium wilfordii HOM05D000604 ORTHO05D004512 3.6e-56 222.6 167 70.7
CiPaw.02G127200 Carya illinoinensis HOM05D000604 ORTHO05D004512 4.7e-56 222.2 162 69.8
COL.COLO4_23726 Corchorus olitorius HOM05D000604 ORTHO05D004512 1.1e-55 221.1 159 72.3
CsaV3_1G038950 Cucumis sativus L. HOM05D000604 ORTHO05D004512 1.1e-55 221.1 166 69.9
Cfa002807 Carpinus fangiana HOM05D000604 ORTHO05D004512 1.8e-55 220.3 159 71.7
Cc02_g32830 Coffea canephora HOM05D000604 ORTHO05D004512 4.0e-55 219.2 165 67.9
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 6.8e-55 218.4 166 68.7
Glyma.10G158100 Glycine max HOM05D000604 ORTHO05D004512 6.8e-55 218.4 163 66.3
Thecc.10G069000 Theobroma cacao HOM05D000604 ORTHO05D004512 1.5e-54 217.2 162 69.8
QL07p023602 Quercus lobata HOM05D000604 ORTHO05D004512 3.4e-54 216.1 211 56.4
Duzib128G0428 Durio zibethinus HOM05D000604 ORTHO05D004512 4.4e-54 215.7 164 68.3
MBI18_g38867_MAGBIO Magnolia biondii HOM05D000604 ORTHO05D004512 4.4e-54 215.7 164 68.9
Oeu026653.1 Olea europaea HOM05D000604 ORTHO05D004512 5.8e-54 215.3 168 67.3
Phvul.007G183500 Phaseolus vulgaris HOM05D000604 ORTHO05D004512 5.8e-54 215.3 166 63.9
VMungo0720G1625 Vigna mungo HOM05D000604 ORTHO05D004512 2.2e-53 213.4 166 63.9
Prupe.6G333200 Prunus persica HOM05D000604 ORTHO05D004512 4.9e-53 212.2 161 69.6
PSO161G0104 Papaver somniferum HOM05D000604 ORTHO05D004512 6.4e-53 211.8 164 70.1
SalBow6G2614 Salvia bowleyana HOM05D000604 ORTHO05D004512 6.4e-53 211.8 169 66.3
QL06p022999 Quercus lobata HOM05D000604 ORTHO05D004512 8.3e-53 211.5 157 68.8
Potri.008G043600 Populus trichocarpa HOM05D000604 ORTHO05D004512 1.9e-52 210.3 166 68.7
Manes.08G028200 Manihot esculenta HOM05D000604 ORTHO05D004512 2.4e-52 209.9 164 70.1
Sabra08G0030100 Salix brachista HOM05D000604 ORTHO05D004512 3.2e-52 209.5 166 69.3
Ciclev10031535m.g Citrus clementina HOM05D000604 ORTHO05D004512 5.4e-52 208.8 156 67.3
Lalb_Chr21g0310821 Lupinus albus HOM05D000604 ORTHO05D004512 9.2e-52 208.0 166 65.7
Haze_25104 Corylus avellana HOM05D000258 ORTHO05D000153 2.1e-51 206.8 168 66.1
Migut.K01228 Erythranthe guttata HOM05D000604 ORTHO05D004512 3.5e-51 206.1 166 64.5
AUR62000905 Chenopodium quinoa HOM05D000604 ORTHO05D004512 4.6e-51 205.7 142 70.4
Sed0027198 Sechium edule HOM05D000604 ORTHO05D004512 6.0e-51 205.3 166 64.5
Nitab4.5_0000245g0230 Nicotiana tabacum HOM05D000604 ORTHO05D004512 1.3e-50 204.1 166 66.3
Glyma.20G230500 Glycine max HOM05D000604 ORTHO05D004512 1.7e-50 203.8 165 63.0
Actinidia28390 Actinidia chinensis HOM05D000604 ORTHO05D004512 2.3e-50 203.4 168 65.5
Solyc01g098350.3 Solanum lycopersicum HOM05D000604 ORTHO05D004512 2.3e-50 203.4 166 64.5
Sopen01g041910 Solanum pennellii HOM05D000604 ORTHO05D004512 2.3e-50 203.4 166 64.5
Nitab4.5_0001165g0020 Nicotiana tabacum HOM05D000604 ORTHO05D004512 3.0e-50 203.0 167 65.3
PGSC0003DMG400022453 Solanum tuberosum HOM05D000604 ORTHO05D004512 3.0e-50 203.0 165 64.2
Migut.J00575 Erythranthe guttata HOM05D000604 ORTHO05D004512 5.1e-50 202.2 164 65.2
Peaxi162Scf00225g00622 Petunia axillaris HOM05D000604 ORTHO05D004512 6.6e-50 201.8 155 66.5
ECA232G0151 Erigeron canadensis HOM05D000604 ORTHO05D004512 1.1e-49 201.1 165 61.8
Eucgr.H04430 Eucalyptus grandis HOM05D000604 ORTHO05D004512 1.5e-49 200.7 164 64.6
MD04G1213300 Malus domestica HOM05D000604 ORTHO05D004512 1.9e-49 200.3 156 67.9
Sc16g0008250 Simmondsia chinensis HOM05D000604 ORTHO05D004512 2.5e-49 199.9 163 65.6
Lj3g0003298 Lotus japonicus HOM05D000604 ORTHO05D004512 4.3e-49 199.1 166 63.3
Oeu028231.1 Olea europaea HOM05D000604 ORTHO05D004512 1.2e-48 197.6 177 59.3
arahy.Tifrunner.gnm1.ann1.LQ82RV Arachis hypogaea HOM05D000604 ORTHO05D004512 2.8e-48 196.4 166 62.7
Gorai.002G143200 Gossypium raimondii HOM05D000604 ORTHO05D004512 2.8e-48 196.4 132 75.8
AUR62036638 Chenopodium quinoa HOM05D000604 ORTHO05D004512 1.1e-47 194.5 147 66.0
MD12G1227500 Malus domestica HOM05D000604 ORTHO05D004512 1.4e-47 194.1 165 63.0
Medtr5g010140 Medicago truncatula HOM05D000604 ORTHO05D004512 3.1e-47 193.0 166 57.8
arahy.Tifrunner.gnm1.ann1.EVL1N6 Arachis hypogaea HOM05D000604 ORTHO05D004512 1.2e-46 191.0 166 61.4
Ca_02808_v3 Cicer arietinum L. HOM05D000604 ORTHO05D004512 1.2e-46 191.0 166 58.4
FAN05G3414 Fragaria x ananassa HOM05D000604 ORTHO05D004512 2.6e-46 189.9 151 65.6
FAN14G1953 Fragaria x ananassa HOM05D000604 ORTHO05D004512 2.6e-46 189.9 146 66.4
MSTRG.18261 Avicennia marina HOM05D000604 ORTHO05D004512 5.8e-46 188.7 166 60.8
FvH4_6g04870 Fragaria vesca HOM05D000604 ORTHO05D004512 5.8e-46 188.7 146 66.4
FAN05G3826 Fragaria x ananassa HOM05D000604 ORTHO05D004512 7.6e-46 188.3 151 64.9
DCAR_020452 Daucus carota HOM05D000604 ORTHO05D004512 9.9e-46 188.0 166 63.3
FAN02G4461 Fragaria x ananassa HOM05D000604 ORTHO05D004512 1.3e-45 187.6 195 51.8
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 1.7e-45 187.2 125 74.4
FAN09G4787 Fragaria x ananassa HOM05D000604 ORTHO05D004512 1.7e-45 187.2 146 65.1
RcHm_v2.0_Chr3g0453411 Rosa chinensis HOM05D000604 ORTHO05D004512 2.9e-45 186.4 151 63.6
TPR.G6694 Trifolium pratense HOM05D000604 ORTHO05D004512 2.9e-45 186.4 166 55.4
Ca_14509_v3 Cicer arietinum L. HOM05D000604 ORTHO05D004512 6.4e-45 185.3 166 57.2
Medtr5g055170 Medicago truncatula HOM05D000604 ORTHO05D004512 8.4e-45 184.9 168 57.7
PGR031G1961 Punica granatum HOM05D000604 ORTHO05D004512 1.4e-44 184.1 154 64.9
Psat2g182520 Pisum sativum HOM05D006321 ORTHO05D004512 3.2e-44 183.0 170 55.9
Gohir.A01G133500 Gossypium hirsutum HOM05D000604 ORTHO05D004512 2.1e-43 180.3 124 74.2
Oeu049932.2 Olea europaea HOM05D000604 ORTHO05D004512 2.1e-43 180.3 166 59.0
HPP92_017559 Vanilla planifolia HOM05D000604 ORTHO05D004512 2.1e-43 180.3 166 59.0
Gohir.D01G117700 Gossypium hirsutum HOM05D000604 ORTHO05D004512 2.7e-43 179.9 124 73.4
CAN.G134.221 Capsicum annuum HOM05D000604 ORTHO05D004512 1.3e-42 177.6 164 59.8
SHI08941 Sapria himalayana HOM05D000604 ORTHO05D004512 1.7e-42 177.2 166 60.2
Actinidia19815 Actinidia chinensis HOM05D000604 ORTHO05D004512 6.6e-42 175.3 99 82.8
ATR0706G007 Amborella trichopoda HOM05D000604 ORTHO05D004512 8.7e-42 174.9 167 58.1
AUR62005070 Chenopodium quinoa HOM05D000604 ORTHO05D004512 3.3e-41 172.9 111 75.7
HanXRQChr15g0464271 Helianthus annuus HOM05D000604 ORTHO05D004512 3.3e-41 172.9 166 59.0
CANSAT01G1793 Cannabis sativa HOM05D000604 ORTHO05D004512 9.6e-41 171.4 166 58.4
CANSAT54G2755 Cannabis sativa HOM05D000604 ORTHO05D004512 2.1e-40 170.2 166 56.0
CDE11G1039 Ceratophyllum demersum HOM05D000604 ORTHO05D004512 1.1e-39 167.9 167 55.7
CDE05G3027 Ceratophyllum demersum HOM05D000604 ORTHO05D004512 4.0e-39 166.0 155 56.1
unitig_750.g28505 Utricularia gibba HOM05D000604 ORTHO05D004512 4.0e-39 166.0 166 51.8
Aa31LG5G9440 Aethionema arabicum HOM05D000604 ORTHO05D004512 6.9e-39 165.2 146 61.0
SEGI_04759 Sequoiadendron giganteum HOM05D000604 ORTHO05D004512 6.9e-39 165.2 218 44.5
SGA_v2.0_scaffold192G40625 Striga asiatica HOM05D000604 ORTHO05D004512 9.0e-39 164.9 158 58.2
THA.LOC104826738 Tarenaya hassleriana HOM05D000604 ORTHO05D004512 7.6e-38 161.8 146 58.9
Thhalv10007728m.g Eutrema salsugineum HOM05D000604 ORTHO05D004512 1.3e-37 161.0 156 59.6
Lsat_1_v5_gn_9_71340 Lactuca sativa HOM05D002827 ORTHO05D004512 2.2e-37 160.2 137 64.2
Lj9A677G36 Lonicera japonica HOM05D000604 ORTHO05D004512 4.9e-37 159.1 82 87.8
Sp4g07260 Schrenkiella parvula HOM05D000604 ORTHO05D004512 2.4e-36 156.8 168 53.6
A07p12190 Brassica napus HOM05D000604 ORTHO05D004512 3.2e-36 156.4 148 58.8
BraA07t29003Z Brassica rapa HOM05D000604 ORTHO05D004512 3.2e-36 156.4 148 58.8
C07p18150 Brassica napus HOM05D000604 ORTHO05D004512 4.2e-36 156.0 145 57.9
Sp1g23300 Schrenkiella parvula HOM05D000604 ORTHO05D004512 4.2e-36 156.0 153 58.8
CARHR118360 Cardamine hirsuta HOM05D000604 ORTHO05D004512 5.4e-36 155.6 205 46.3
Carub.0004s0633 Capsella rubella HOM05D000604 ORTHO05D004512 2.1e-35 153.7 156 56.4
AL4G19120 Arabidopsis lyrata HOM05D000604 ORTHO05D004512 4.6e-35 152.5 166 56.6
BolC7t42325H Brassica oleracea HOM05D000604 ORTHO05D004512 6.0e-35 152.1 145 56.6
Cpa.g.sc81.66 Carica papaya HOM05D000604 ORTHO05D004512 3.9e-34 149.4 82 82.9
AT2G26430 Arabidopsis thaliana HOM05D000604 ORTHO05D004512 5.1e-34 149.1 156 55.1
EL10Ac4g09280 Beta vulgaris HOM05D000604 ORTHO05D004512 6.6e-34 148.7 82 82.9
A09p38800 Brassica napus HOM05D000604 ORTHO05D004512 1.6e-32 144.1 146 55.5
Prupe.7G087700 Prunus persica HOM05D000604 ORTHO05D004512 1.6e-32 144.1 95 72.6
Os01g0377500 Oryza sativa ssp. japonica HOM05D000604 ORTHO05D004512 1.2e-30 137.9 154 53.2
Lsat_1_v5_gn_0_34680 Lactuca sativa HOM05D000604 ORTHO05D004512 1.7e-29 134.0 142 47.2
Zm00001eb048550 Zea mays HOM05D000604 ORTHO05D004512 6.4e-29 132.1 154 50.6
Zm00001eb307170 Zea mays HOM05D000604 ORTHO05D004512 3.2e-28 129.8 131 56.5
FAN14G1660 Fragaria x ananassa HOM05D000604 ORTHO05D004512 1.2e-27 127.9 146 53.4
FAN14G4098 Fragaria x ananassa HOM05D000604 ORTHO05D004512 1.2e-27 127.9 146 53.4
Nitab4.5_0005181g0060 Nicotiana tabacum HOM05D000604 ORTHO05D004512 2.1e-27 127.1 128 53.1
VMungo0720G1622 Vigna mungo HOM05D000604 ORTHO05D004512 1.3e-26 124.4 62 87.1
Lsat_1_v5_gn_8_124560 Lactuca sativa HOM05D000604 ORTHO05D004512 2.3e-26 123.6 111 53.2
Lj6A239T12 Lonicera japonica HOM05D000604 ORTHO05D004512 8.7e-26 121.7 65 80.0
Lsat_1_v5_gn_8_124580 Lactuca sativa HOM05D000604 ORTHO05D004512 2.5e-25 120.2 111 51.4
Migut.N00466 Erythranthe guttata HOM05D000604 ORTHO05D004512 9.6e-25 118.2 60 85.0
Lj6C239T2 Lonicera japonica HOM05D000604 ORTHO05D004512 1.6e-24 117.5 62 80.6
CBR_g41142 Chara braunii HOM05D000604 ORTHO05D004512 8.1e-24 115.2 74 68.9
C05p25700 Brassica napus HOM05D000604 ORTHO05D004512 1.1e-23 114.8 68 75.0
Lj6P238T8 Lonicera japonica HOM05D000604 ORTHO05D004512 2.4e-23 113.6 62 79.0
AagrBONN_evm.TU.Sc2ySwM_344.3972 Anthoceros agrestis HOM05D000604 ORTHO05D004512 6.9e-23 112.1 122 49.2
Thhalv10027406m.g Eutrema salsugineum HOM05D000604 ORTHO05D004512 5.8e-22 109.0 55 89.1
CSS0035141 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D043368 2.2e-21 107.1 85 71.8
Peaxi162Scf00202g00034 Petunia axillaris HOM05D000604 ORTHO05D004512 2.2e-21 107.1 53 86.8
SMO171G0100 Selaginella moellendorffii HOM05D000604 ORTHO05D004512 3.8e-21 106.3 114 50.9
PSO478G0154 Papaver somniferum HOM05D000604 ORTHO05D004512 8.4e-21 105.1 121 53.7
Peaxi162Scf00690g00025 Petunia axillaris HOM05D003992 ORTHO05D004329 8.4e-21 105.1 100 51.0
Mapoly0037s0071 Marchantia polymorpha HOM05D000604 ORTHO05D004512 1.1e-20 104.8 150 43.3
Peaxi162Scf00132g00024 Petunia axillaris HOM05D000604 ORTHO05D004512 1.1e-20 104.8 101 49.5
Sabra10G0168700 Salix brachista HOM05D000604 ORTHO05D004512 9.3e-20 101.7 67 71.6
Oeu052139.1 Olea europaea HOM05D000604 ORTHO05D004512 1.6e-19 100.9 108 52.8
PGSC0003DMG400003689 Solanum tuberosum HOM05D000604 ORTHO05D004512 2.7e-19 100.1 49 87.8
Lj6C237T1 Lonicera japonica HOM05D000604 ORTHO05D004512 1.8e-18 97.4 83 59.0
Pp3c9_26180 Physcomitrium patens HOM05D000604 ORTHO05D004512 8.7e-18 95.1 167 37.1
ATR1149G096 Amborella trichopoda HOM05D000604 ORTHO05D004512 1.9e-17 94.0 72 59.7
Psat2g184680 Pisum sativum HOM05D000604 ORTHO05D004512 4.3e-17 92.8 92 50.0
Pp3c15_25980 Physcomitrium patens HOM05D000604 ORTHO05D004512 7.4e-17 92.0 175 37.7
Thhalv10001260m.g Eutrema salsugineum HOM05D000604 ORTHO05D004512 1.1e-15 88.2 138 44.9
Cre07.g321650 Chlamydomonas reinhardtii HOM05D000604 ORTHO05D004512 1.0e-10 71.6 59 55.9
Peaxi162Scf01056g00011 Petunia axillaris HOM05D000604 ORTHO05D004512 3.0e-10 70.1 33 84.8
TWI63G0077 Tripterygium wilfordii HOM05D000604 ORTHO05D043368 3.3e-09 66.6 57 63.2
EL10Ac4g09279 Beta vulgaris HOM05D000604 ORTHO05D089785 3.1e-07 60.1 65 53.8
MCO04G357 Micromonas commoda HOM05D000604 ORTHO05D004512 9.0e-07 58.5 57 40.4


User provided reference genes

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