Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 7.5e-49 196.8 96 100.0
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 8.0e-27 123.6 96 63.5
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 1.1e-26 123.2 91 71.4
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 3.4e-25 118.2 91 65.9
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 5.8e-25 117.5 97 61.9
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 9.8e-25 116.7 103 59.2
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 1.3e-24 116.3 100 63.0
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 2.9e-24 115.2 100 63.0
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 3.2e-23 111.7 100 60.0
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 4.1e-23 111.3 97 61.9
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 7.1e-23 110.5 97 60.8
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 1.2e-22 109.8 76 73.7
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 2.1e-22 109.0 97 59.8
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 6.0e-22 107.5 96 57.3
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 1.3e-21 106.3 94 60.6
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 3.9e-21 104.8 100 56.0
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 5.1e-21 104.4 100 56.0
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 8.6e-21 103.6 99 55.6
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 1.1e-20 103.2 91 56.0
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 1.1e-20 103.2 92 59.8
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.5e-20 102.8 92 58.7
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.5e-20 102.8 92 58.7
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 1.9e-20 102.4 99 55.6
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 2.5e-20 102.1 97 56.7
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 3.3e-20 101.7 98 57.1
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 3.3e-20 101.7 96 56.2
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 4.3e-20 101.3 97 56.7
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 4.3e-20 101.3 102 60.8
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 7.3e-20 100.5 97 57.7
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 7.3e-20 100.5 99 55.6
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 9.5e-20 100.1 96 57.3
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 1.2e-19 99.8 94 55.3
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 1.6e-19 99.4 90 61.1
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 4.7e-19 97.8 99 51.5
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 1.1e-18 96.7 97 56.7
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 1.4e-18 96.3 96 54.2
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 1.8e-18 95.9 97 56.7
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 1.8e-18 95.9 103 49.5
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 2.3e-18 95.5 61 72.1
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 2.3e-18 95.5 98 54.1
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 2.3e-18 95.5 96 51.0
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 3.1e-18 95.1 91 50.5
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 3.1e-18 95.1 99 50.5
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 4.0e-18 94.7 100 53.0
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 5.2e-18 94.4 91 54.9
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 1.2e-17 93.2 99 50.5
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 1.2e-17 93.2 100 49.0
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 1.2e-17 93.2 93 49.5
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 1.2e-17 93.2 97 54.6
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 1.2e-17 93.2 100 53.0
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 2.6e-17 92.0 96 50.0
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 3.4e-17 91.7 97 51.5
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 3.4e-17 91.7 99 51.5
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 4.4e-17 91.3 91 52.7
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 4.4e-17 91.3 92 47.8
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 7.6e-17 90.5 104 51.9
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 7.6e-17 90.5 104 51.9
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.3e-16 89.7 81 54.3
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 1.3e-16 89.7 85 54.1
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 1.3e-16 89.7 91 49.5
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 1.7e-16 89.4 91 50.5
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 1.7e-16 89.4 93 54.8
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 2.2e-16 89.0 100 50.0
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 2.2e-16 89.0 109 52.3
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 3.7e-16 88.2 95 52.6
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 4.9e-16 87.8 109 51.4
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 1.4e-15 86.3 97 47.4
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 1.4e-15 86.3 100 47.0
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 2.4e-15 85.5 96 49.0
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 2.4e-15 85.5 110 48.2
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 3.2e-15 85.1 101 51.5
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 4.1e-15 84.7 80 58.8
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 7.1e-15 84.0 100 50.0
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 9.2e-15 83.6 98 49.0
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 9.2e-15 83.6 98 49.0
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 1.2e-14 83.2 103 46.6
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 1.2e-14 83.2 102 52.9
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 1.6e-14 82.8 66 59.1
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 1.6e-14 82.8 110 49.1
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 2.1e-14 82.4 104 49.0
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 2.7e-14 82.0 98 48.0
Migut.N00292 Erythranthe guttata HOM05D005475 ORTHO05D006575 3.5e-14 81.6 81 55.6
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 6.0e-14 80.9 97 50.5
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 1.3e-13 79.7 71 57.7
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 1.3e-13 79.7 104 50.0
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 1.7e-13 79.3 97 46.4
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 1.7e-13 79.3 97 46.4
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 1.7e-13 79.3 54 66.7
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 2.3e-13 79.0 121 38.8
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 2.3e-13 79.0 77 55.8
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 2.3e-13 79.0 80 55.0
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 6.6e-13 77.4 96 44.8
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 8.6e-13 77.0 102 47.1
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 1.1e-12 76.6 79 49.4
AUR62002181 Chenopodium quinoa HOM05D005475 ORTHO05D006575 1.5e-12 76.3 99 50.5
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 1.5e-12 76.3 100 51.0
AUR62015529 Chenopodium quinoa HOM05D005475 ORTHO05D006575 1.9e-12 75.9 99 50.5
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 1.9e-12 75.9 77 53.2
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 2.5e-12 75.5 80 48.8
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 5.6e-12 74.3 97 45.4
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 5.6e-12 74.3 74 56.8
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 7.3e-12 73.9 97 46.4
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 9.6e-12 73.6 120 44.2
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 1.2e-11 73.2 78 53.8
Rhsim04G0173600 Rhododendron simsii HOM05D005475 ORTHO05D006575 2.8e-11 72.0 129 38.8
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 3.6e-11 71.6 98 44.9
BcaB06g28682 Brassica carinata HOM05D005475 ORTHO05D006575 8.1e-11 70.5 54 59.3
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 1.4e-10 69.7 73 49.3
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 3.1e-10 68.6 70 51.4
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 4.0e-10 68.2 102 42.2
HanXRQChr01g0022901 Helianthus annuus HOM05D005475 ORTHO05D006575 5.2e-10 67.8 40 75.0
unitig_26.g9548 Utricularia gibba HOM05D005475 ORTHO05D006575 6.8e-10 67.4 113 40.7
BcaC02g07831 Brassica carinata HOM05D005475 ORTHO05D006575 8.9e-10 67.0 54 55.6
C04p62850 Brassica napus HOM05D005475 ORTHO05D006575 8.9e-10 67.0 54 55.6
BolC4t27768H Brassica oleracea HOM05D005475 ORTHO05D006575 8.9e-10 67.0 54 55.6
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 8.9e-10 67.0 83 51.8
A04p25690 Brassica napus HOM05D005475 ORTHO05D006575 1.2e-09 66.6 54 55.6
BraA04t18073Z Brassica rapa HOM05D005475 ORTHO05D006575 1.2e-09 66.6 54 55.6
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 1.2e-09 66.6 45 66.7
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 1.5e-09 66.2 41 73.2
A03p18710 Brassica napus HOM05D005475 ORTHO05D006575 2.6e-09 65.5 54 53.7
BraA03t11131Z Brassica rapa HOM05D005475 ORTHO05D006575 2.6e-09 65.5 54 53.7
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 3.4e-09 65.1 44 65.9
Os03g0138400 Oryza sativa ssp. japonica HOM05D005475 ORTHO05D006575 3.4e-09 65.1 98 40.8
C03p21860 Brassica napus HOM05D005475 ORTHO05D006575 5.8e-09 64.3 54 53.7
BolC3t14568H Brassica oleracea HOM05D005475 ORTHO05D006575 5.8e-09 64.3 54 53.7
DCAR_027337 Daucus carota HOM05D005475 ORTHO05D006575 5.8e-09 64.3 83 47.0
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 7.6e-09 63.9 79 49.4
EL10Ac3g04956 Beta vulgaris HOM05D005475 ORTHO05D006575 9.9e-09 63.5 81 48.1
unitig_749.g13516 Utricularia gibba HOM05D005475 ORTHO05D006575 1.3e-08 63.2 107 43.9
BcaC01g05844 Brassica carinata HOM05D005475 ORTHO05D006575 2.2e-08 62.4 53 50.9
Lalb_Chr02g0150621 Lupinus albus HOM05D005475 ORTHO05D006575 2.2e-08 62.4 40 67.5
Ah.04g155370 Amaranthus hybridus HOM05D005475 ORTHO05D006575 6.4e-08 60.8 99 44.4
Sed0016405 Sechium edule HOM05D005475 ORTHO05D006575 6.4e-08 60.8 89 42.7
HPP92_007739 Vanilla planifolia HOM05D005475 ORTHO05D006575 1.1e-07 60.1 94 40.4
Zm00001eb003130 Zea mays HOM05D005475 ORTHO05D006575 7.1e-07 57.4 88 43.2
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 2.1e-06 55.8 55 49.1
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 2.1e-06 55.8 55 49.1
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 2.1e-06 55.8 55 49.1
ATR0736G038 Amborella trichopoda HOM05D005475 ORTHO05D006575 4.6e-06 54.7 92 45.7


User provided reference genes

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