Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0777 Trochodendron aralioides HOM05D002144 ORTHO05D002170 1.4e-165 586.3 301 100.0
TAR636G2787 Trochodendron aralioides HOM05D040956 ORTHO05D000167 6.4e-22 109.0 106 60.4
TAR460G0005 Trochodendron aralioides HOM05D040956 ORTHO05D000167 7.9e-20 102.1 109 53.2
Manes.09G171400 Manihot esculenta HOM05D002144 ORTHO05D002170 1.1e-18 98.2 64 79.7
Thecc.05G314100 Theobroma cacao HOM05D002144 ORTHO05D002170 2.5e-18 97.1 64 79.7
Gohir.A11G268700 Gossypium hirsutum HOM05D002144 ORTHO05D002170 4.3e-18 96.3 64 78.1
Gohir.D11G278700 Gossypium hirsutum HOM05D002144 ORTHO05D002170 4.3e-18 96.3 64 78.1
Gorai.007G300900 Gossypium raimondii HOM05D002144 ORTHO05D002170 4.3e-18 96.3 64 78.1
TAR365G0709 Trochodendron aralioides HOM05D002144 ORTHO05D002170 4.3e-18 96.3 63 81.0
Sabra13G0012800 Salix brachista HOM05D002144 ORTHO05D002170 1.6e-17 94.4 64 75.0
GSVIVG01031183001 Vitis vinifera HOM05D002144 ORTHO05D002170 1.6e-17 94.4 64 73.4
Manes.08G116600 Manihot esculenta HOM05D002144 ORTHO05D002170 2.8e-17 93.6 64 76.6
Cfa006639 Carpinus fangiana HOM05D002144 ORTHO05D002170 6.2e-17 92.4 65 76.9
COL.COLO4_10536 Corchorus olitorius HOM05D002144 ORTHO05D002170 1.1e-16 91.7 64 73.4
Duzib106G0149 Durio zibethinus HOM05D002144 ORTHO05D002170 1.4e-16 91.3 64 73.4
Potri.013G014900 Populus trichocarpa HOM05D002144 ORTHO05D002170 5.3e-16 89.4 64 71.9
CSS0005363 Camellia sinensis var. sinensis HOM05D002144 ORTHO05D002170 2.6e-15 87.0 65 70.8
CiPaw.07G022600 Carya illinoinensis HOM05D002144 ORTHO05D002170 3.4e-15 86.7 64 70.3
Haze_04128 Corylus avellana HOM05D002144 ORTHO05D002170 7.6e-15 85.5 62 75.8
Gorai.007G341000 Gossypium raimondii HOM05D002144 ORTHO05D002170 4.9e-14 82.8 64 65.6
Hma1.2p1_1021F.1_g248660 Hydrangea macrophylla HOM05D002144 ORTHO05D002170 6.4e-14 82.4 63 71.4
Glyma.10G151000 Glycine max HOM05D002144 ORTHO05D002170 8.4e-14 82.0 64 68.8
Gohir.D11G309100 Gossypium hirsutum HOM05D002144 ORTHO05D002170 8.4e-14 82.0 64 65.6
Ciclev10002843m.g Citrus clementina HOM05D002144 ORTHO05D002170 1.1e-13 81.6 64 70.3
Rhsim07G0190700 Rhododendron simsii HOM05D002144 ORTHO05D002170 1.4e-13 81.3 64 68.8
QL03p019949 Quercus lobata HOM05D002144 ORTHO05D002170 2.5e-13 80.5 62 71.0
FvH4_6g06830 Fragaria vesca HOM05D002144 ORTHO05D002170 4.2e-13 79.7 63 71.4
FAN14G0731 Fragaria x ananassa HOM05D002144 ORTHO05D002170 4.2e-13 79.7 63 71.4
RcHm_v2.0_Chr3g0456211 Rosa chinensis HOM05D002144 ORTHO05D002170 5.5e-13 79.3 54 77.8
arahy.Tifrunner.gnm1.ann1.1G1J9V Arachis hypogaea HOM05D002144 ORTHO05D002170 7.1e-13 79.0 53 77.4
Glyma.03G234800 Glycine max HOM05D002144 ORTHO05D002170 7.1e-13 79.0 64 67.2
Solyc01g099840.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 7.1e-13 79.0 66 68.2
Sopen00g009360 Solanum pennellii HOM05D002144 ORTHO05D002170 7.1e-13 79.0 66 68.2
Sopen01g043350 Solanum pennellii HOM05D002144 ORTHO05D002170 7.1e-13 79.0 66 68.2
Sc16g0008780 Simmondsia chinensis HOM05D002144 ORTHO05D002170 9.3e-13 78.6 63 68.3
PGSC0003DMG400024720 Solanum tuberosum HOM05D002144 ORTHO05D002170 9.3e-13 78.6 66 66.7
Glyma.20G237200 Glycine max HOM05D002144 ORTHO05D002170 1.2e-12 78.2 64 68.8
TAR626G1958 Trochodendron aralioides HOM05D000007 ORTHO05D035049 1.2e-12 78.2 86 51.2
VMungo0720G1086 Vigna mungo HOM05D002144 ORTHO05D002170 1.2e-12 78.2 65 67.7
Thhalv10029065m.g Eutrema salsugineum HOM05D002144 ORTHO05D002170 1.6e-12 77.8 66 65.2
MBI18_g06040_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 1.6e-12 77.8 65 70.8
TPR.G33200 Trifolium pratense HOM05D002144 ORTHO05D002170 2.1e-12 77.4 64 68.8
CAN.G1459.22 Capsicum annuum HOM05D002144 ORTHO05D002170 3.5e-12 76.6 66 65.2
Nn4g25785 Nelumbo nucifera HOM05D002144 ORTHO05D002170 4.6e-12 76.3 61 67.2
Lj1g0021138 Lotus japonicus HOM05D002144 ORTHO05D002170 6.0e-12 75.9 64 67.2
Peaxi162Scf00471g00710 Petunia axillaris HOM05D002144 ORTHO05D002170 6.0e-12 75.9 65 67.7
Sp6g02660 Schrenkiella parvula HOM05D002144 ORTHO05D002170 6.0e-12 75.9 67 62.7
Phvul.007G197700 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 7.9e-12 75.5 65 67.7
COL.COLO4_20392 Corchorus olitorius HOM05D000003 ORTHO05D000167 1.0e-11 75.1 163 32.5
Sed0007798 Sechium edule HOM05D002144 ORTHO05D002170 1.3e-11 74.7 64 67.2
Actinidia19775 Actinidia chinensis HOM05D002144 ORTHO05D002170 1.8e-11 74.3 69 62.3
Psat6g150920 Pisum sativum HOM05D002144 ORTHO05D002170 1.8e-11 74.3 63 65.1
BcaC04g24010 Brassica carinata HOM05D002144 ORTHO05D002170 2.3e-11 73.9 70 58.6
Gohir.A13G174700 Gossypium hirsutum HOM05D002144 ORTHO05D002170 2.3e-11 73.9 65 66.2
Gohir.D13G180500 Gossypium hirsutum HOM05D002144 ORTHO05D002170 2.3e-11 73.9 65 66.2
Rhsim05G0137800 Rhododendron simsii HOM05D002144 ORTHO05D002170 2.3e-11 73.9 68 60.3
Sed0012165 Sechium edule HOM05D002144 ORTHO05D002170 3.0e-11 73.6 124 45.2
PGR031G3340 Punica granatum HOM05D002144 ORTHO05D002170 3.9e-11 73.2 63 69.8
MSTRG.5114 Avicennia marina HOM05D002144 ORTHO05D002170 5.1e-11 72.8 72 58.3
HanXRQChr11g0320831 Helianthus annuus HOM05D002144 ORTHO05D002170 5.1e-11 72.8 63 68.3
Lalb_Chr21g0310551 Lupinus albus HOM05D002144 ORTHO05D002170 5.1e-11 72.8 64 62.5
A09p02140 Brassica napus HOM05D002144 ORTHO05D002170 6.7e-11 72.4 70 58.6
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 6.7e-11 72.4 71 62.0
vmacro19696 Vaccinium macrocarpon HOM05D002144 ORTHO05D002170 6.7e-11 72.4 68 58.8
Prupe.6G319600 Prunus persica HOM05D002144 ORTHO05D002170 8.7e-11 72.0 69 62.3
Atru.chr2.81 Acer truncatum HOM05D002144 ORTHO05D002170 1.1e-10 71.6 63 63.5
Gorai.013G205900 Gossypium raimondii HOM05D002144 ORTHO05D002170 1.1e-10 71.6 65 64.6
Lsat_1_v5_gn_7_71780 Lactuca sativa HOM05D002144 ORTHO05D002170 1.5e-10 71.2 63 68.3
THA.LOC104805892 Tarenaya hassleriana HOM05D002144 ORTHO05D002170 2.5e-10 70.5 76 57.9
Nitab4.5_0005982g0020 Nicotiana tabacum HOM05D002144 ORTHO05D002170 3.3e-10 70.1 68 61.8
BcaB01g02012 Brassica carinata HOM05D002144 ORTHO05D002170 4.3e-10 69.7 73 57.5
DCAR_029386 Daucus carota HOM05D002144 ORTHO05D002170 4.3e-10 69.7 66 65.2
MSTRG.27979 Avicennia marina HOM05D002144 ORTHO05D002170 5.6e-10 69.3 66 59.1
CsaV3_2G006690 Cucumis sativus L. HOM05D002144 ORTHO05D002170 5.6e-10 69.3 65 60.0
Dinv30825 Davidia involucrata HOM05D002144 ORTHO05D004617 5.6e-10 69.3 62 66.1
HanXRQChr03g0074691 Helianthus annuus HOM05D002144 ORTHO05D002170 5.6e-10 69.3 78 57.7
BcaB05g23660 Brassica carinata HOM05D002144 ORTHO05D002170 9.6e-10 68.6 70 57.1
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 9.6e-10 68.6 65 60.0
TAR624G0105 Trochodendron aralioides HOM05D040956 ORTHO05D000167 9.6e-10 68.6 72 55.6
BcaC03g16170 Brassica carinata HOM05D002144 ORTHO05D002170 1.3e-09 68.2 68 58.8
C02p39100 Brassica napus HOM05D002144 ORTHO05D002170 1.3e-09 68.2 68 58.8
COL.COLO4_13287 Corchorus olitorius HOM05D000003 ORTHO05D000126 1.3e-09 68.2 132 34.1
Lalb_Chr18g0045821 Lupinus albus HOM05D002144 ORTHO05D002170 1.3e-09 68.2 64 62.5
CiPaw.08G161100 Carya illinoinensis HOM05D002144 ORTHO05D002170 2.1e-09 67.4 55 67.3
BolC3t16055H Brassica oleracea HOM05D002144 ORTHO05D002170 3.7e-09 66.6 75 53.3
Gohir.A11G294400 Gossypium hirsutum HOM05D002144 ORTHO05D002170 3.7e-09 66.6 47 70.2
CARHR002160 Cardamine hirsuta HOM05D002144 ORTHO05D002170 4.8e-09 66.2 75 54.7
COL.COLO4_29577 Corchorus olitorius HOM05D000003 ORTHO05D000004 4.8e-09 66.2 132 33.3
Hund07106 Selenicereus undatus HOM05D002144 ORTHO05D002170 4.8e-09 66.2 74 58.1
C03p37650 Brassica napus HOM05D002144 ORTHO05D002170 6.2e-09 65.9 77 51.9
PSO729G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 6.2e-09 65.9 81 53.1
BraA03t12265Z Brassica rapa HOM05D002144 ORTHO05D002170 8.2e-09 65.5 79 50.6
Phvul.006G089000 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 8.2e-09 65.5 64 59.4
AT1G56220 Arabidopsis thaliana HOM05D002144 ORTHO05D002170 1.1e-08 65.1 74 55.4
BolC9t53152H Brassica oleracea HOM05D002144 ORTHO05D002170 1.4e-08 64.7 88 47.7
AUR62005218 Chenopodium quinoa HOM05D002144 ORTHO05D002170 1.4e-08 64.7 55 67.3
EL10Ac4g09903 Beta vulgaris HOM05D002144 ORTHO05D002170 3.1e-08 63.5 66 60.6
BolC2t09920H Brassica oleracea HOM05D002144 ORTHO05D002170 5.3e-08 62.8 71 53.5
AL1G65760 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 6.9e-08 62.4 80 53.8
VMungo0540G2203 Vigna mungo HOM05D002144 ORTHO05D002170 6.9e-08 62.4 53 64.2
A03p30880 Brassica napus HOM05D002144 ORTHO05D002170 9.0e-08 62.0 64 56.2
CARHR289760 Cardamine hirsuta HOM05D002144 ORTHO05D002170 1.2e-07 61.6 71 54.9
Oeu017267.1 Olea europaea HOM05D002144 ORTHO05D002170 1.2e-07 61.6 75 52.0
CSS0017301 Camellia sinensis var. sinensis HOM05D002144 ORTHO05D002170 2.0e-07 60.8 51 68.6
Atru.chr13.1861 Acer truncatum HOM05D000003 ORTHO05D000167 2.6e-07 60.5 104 40.4
ATR0796G073 Amborella trichopoda HOM05D002144 ORTHO05D002170 3.4e-07 60.1 64 54.7
Carub.0002s0799 Capsella rubella HOM05D002144 ORTHO05D002170 4.5e-07 59.7 78 50.0
MD12G1212000 Malus domestica HOM05D002144 ORTHO05D002170 5.8e-07 59.3 70 52.9
Nitab4.5_0003113g0120 Nicotiana tabacum HOM05D002144 ORTHO05D002170 1.3e-06 58.2 66 57.6
Nitab4.5_0007800g0010 Nicotiana tabacum HOM05D002144 ORTHO05D002170 1.3e-06 58.2 66 57.6
SalBow7G0387 Salvia bowleyana HOM05D002144 ORTHO05D002170 1.7e-06 57.8 65 56.9
Zm00001eb016420 Zea mays HOM05D002144 ORTHO05D002170 1.7e-06 57.8 82 47.6
unitig_0.g2318 Utricularia gibba HOM05D002144 ORTHO05D002170 2.2e-06 57.4 69 58.0
HanXRQChr11g0339851 Helianthus annuus HOM05D002144 ORTHO05D002170 3.8e-06 56.6 63 55.6
COL.COLO4_30555 Corchorus olitorius HOM05D000003 ORTHO05D000167 4.9e-06 56.2 100 36.0
Nn3g21509 Nelumbo nucifera HOM05D002144 ORTHO05D002170 4.9e-06 56.2 34 79.4
Peaxi162Scf00037g01327 Petunia axillaris HOM05D002144 ORTHO05D002170 4.9e-06 56.2 64 54.7


User provided reference genes

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