Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 4.3e-59 231.1 114 100.0
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 4.1e-46 188.0 108 82.4
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.2e-45 186.4 110 82.7
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 3.0e-44 181.8 110 78.2
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 1.1e-43 179.9 110 80.0
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.6e-42 176.0 110 79.1
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 6.2e-42 174.1 108 75.9
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 8.1e-42 173.7 112 79.5
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 8.1e-42 173.7 111 79.3
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 1.1e-41 173.3 112 76.8
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 1.1e-41 173.3 108 75.9
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 1.8e-41 172.6 111 78.4
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 2.3e-41 172.2 108 74.1
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 2.3e-41 172.2 108 77.8
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.3e-41 172.2 112 77.7
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 3.1e-41 171.8 117 71.8
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 4.0e-41 171.4 110 77.3
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 8.9e-41 170.2 107 78.5
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 8.9e-41 170.2 107 78.5
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 8.9e-41 170.2 107 78.5
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.2e-40 169.9 112 77.7
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.2e-40 169.9 108 75.0
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.5e-40 169.5 112 71.4
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.5e-40 169.5 110 77.3
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.5e-40 169.5 116 73.3
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 2.6e-40 168.7 116 71.6
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 3.4e-40 168.3 111 73.0
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 4.4e-40 167.9 102 77.5
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 4.4e-40 167.9 108 72.2
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 5.8e-40 167.5 110 75.5
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 5.8e-40 167.5 156 59.0
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 7.5e-40 167.2 108 76.9
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 7.5e-40 167.2 109 75.2
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 7.5e-40 167.2 116 69.8
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 1.3e-39 166.4 110 75.5
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.3e-39 166.4 113 72.6
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 1.7e-39 166.0 111 71.2
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 2.2e-39 165.6 108 71.3
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 2.2e-39 165.6 88 86.4
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 2.9e-39 165.2 108 75.0
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 4.9e-39 164.5 114 71.9
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 8.3e-39 163.7 117 71.8
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 8.3e-39 163.7 116 68.1
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.1e-38 163.3 114 71.1
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 1.9e-38 162.5 109 69.7
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 2.4e-38 162.2 110 70.9
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 2.4e-38 162.2 110 70.0
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 5.4e-38 161.0 92 80.4
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 5.4e-38 161.0 112 70.5
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 7.1e-38 160.6 108 69.4
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 9.2e-38 160.2 87 82.8
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 1.2e-37 159.8 114 68.4
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.2e-37 159.8 111 68.5
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.2e-37 159.8 113 70.8
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.6e-37 159.5 108 68.5
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.6e-37 159.5 108 68.5
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 3.5e-37 158.3 142 56.3
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.5e-37 158.3 108 68.5
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 6.0e-37 157.5 86 82.6
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 6.0e-37 157.5 86 82.6
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 1.0e-36 156.8 103 78.6
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 1.0e-36 156.8 92 76.1
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 1.3e-36 156.4 86 81.4
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 1.7e-36 156.0 85 84.7
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 1.7e-36 156.0 85 84.7
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.7e-36 156.0 119 63.9
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.7e-36 156.0 108 67.6
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 1.7e-36 156.0 113 67.3
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.3e-36 155.6 113 68.1
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 3.0e-36 155.2 111 69.4
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 3.0e-36 155.2 110 70.0
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 3.9e-36 154.8 105 72.4
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 3.9e-36 154.8 86 83.7
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 5.1e-36 154.5 140 62.1
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 6.6e-36 154.1 111 66.7
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 1.5e-35 152.9 111 66.7
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 1.5e-35 152.9 111 66.7
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.9e-35 152.5 110 65.5
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 1.9e-35 152.5 111 66.7
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.9e-35 152.5 114 66.7
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 1.9e-35 152.5 108 67.6
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 4.3e-35 151.4 108 69.4
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 5.6e-35 151.0 108 66.7
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 7.3e-35 150.6 109 68.8
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 7.3e-35 150.6 111 65.8
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 7.3e-35 150.6 111 66.7
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 9.5e-35 150.2 114 66.7
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 9.5e-35 150.2 111 66.7
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 1.2e-34 149.8 111 65.8
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 1.2e-34 149.8 111 64.9
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 1.2e-34 149.8 117 67.5
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 1.6e-34 149.4 109 67.9
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.6e-34 149.4 113 67.3
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.6e-34 149.4 112 67.0
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 2.1e-34 149.1 112 67.0
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.1e-34 149.1 90 78.9
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 2.8e-34 148.7 111 65.8
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 4.7e-34 147.9 111 65.8
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 8.1e-34 147.1 111 64.9
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 8.1e-34 147.1 110 68.2
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 1.1e-33 146.7 111 65.8
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.1e-33 146.7 111 64.0
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 1.8e-33 146.0 110 66.4
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 3.1e-33 145.2 106 69.8
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 4.0e-33 144.8 96 71.9
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 5.2e-33 144.4 114 64.9
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 8.9e-33 143.7 157 50.3
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.2e-32 143.3 141 56.0
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 1.5e-32 142.9 102 67.6
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 1.5e-32 142.9 102 67.6
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 2.0e-32 142.5 112 64.3
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 2.0e-32 142.5 106 68.9
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.3e-31 139.8 111 64.9
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.3e-31 139.8 111 61.3
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.3e-31 139.8 112 63.4
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 2.2e-31 139.0 111 67.6
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 3.8e-31 138.3 88 72.7
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 6.4e-31 137.5 111 60.4
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 6.4e-31 137.5 116 62.9
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.7e-28 129.4 209 41.1
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 3.0e-28 128.6 118 58.5
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 3.0e-28 128.6 116 58.6
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 3.0e-28 128.6 89 66.3
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 5.1e-28 127.9 80 73.8
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.5e-27 126.3 83 67.5
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 2.5e-27 125.6 87 70.1
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 1.2e-26 123.2 105 66.7
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 2.1e-26 122.5 71 77.5
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.1e-26 122.5 89 64.0
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 4.0e-25 118.2 81 67.9
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.2e-25 117.9 112 56.2
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 5.2e-25 117.9 88 65.9
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 6.9e-25 117.5 97 66.0
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 6.9e-25 117.5 88 65.9
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 9.9e-24 113.6 82 64.6
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.9e-24 113.6 106 57.5
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 2.2e-23 112.5 86 69.8
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 8.4e-23 110.5 79 65.8
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 5.4e-22 107.8 91 60.4
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 9.3e-22 107.1 88 62.5
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.1e-19 100.1 87 58.6
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 1.1e-19 100.1 92 54.3
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 3.3e-19 98.6 66 69.7
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 4.8e-18 94.7 73 64.4
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 6.2e-18 94.4 76 60.5
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 6.2e-18 94.4 76 60.5
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 3.1e-17 92.0 89 55.1
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 7.6e-16 87.4 89 50.6
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 1.7e-15 86.3 69 65.2
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 3.8e-15 85.1 69 55.1
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 3.8e-15 85.1 51 78.4
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 4.2e-14 81.6 60 66.7
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 7.9e-13 77.4 55 63.6
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 1.3e-12 76.6 63 58.7
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 1.1e-11 73.6 62 62.9
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 5.6e-11 71.2 68 45.6
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.1e-10 69.3 46 71.7
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 3.6e-10 68.6 67 50.7
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.8e-09 66.2 50 70.0
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 4.0e-09 65.1 71 47.9
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 6.4e-07 57.8 65 41.5
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 6.4e-07 57.8 65 41.5
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.9e-06 56.2 43 62.8


User provided reference genes

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