Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 1.1e-69 266.5 133 100.0
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 3.1e-61 238.4 131 84.7
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 1.4e-58 229.6 133 82.7
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 1.9e-58 229.2 131 80.9
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 3.2e-58 228.4 131 84.7
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 4.2e-58 228.0 133 83.5
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 1.6e-57 226.1 133 82.7
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 2.7e-57 225.3 131 80.9
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 3.6e-57 224.9 133 82.0
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 6.1e-57 224.2 133 81.2
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 7.9e-57 223.8 133 80.5
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 1.8e-56 222.6 133 80.5
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 2.3e-56 222.2 133 80.5
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 3.9e-56 221.5 133 80.5
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 3.9e-56 221.5 133 79.7
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 3.9e-56 221.5 133 80.5
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 5.1e-56 221.1 133 79.7
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 6.7e-56 220.7 133 79.7
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 6.7e-56 220.7 133 78.9
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 8.8e-56 220.3 133 81.2
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 8.8e-56 220.3 133 80.5
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 8.8e-56 220.3 133 79.7
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 8.8e-56 220.3 133 80.5
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 1.5e-55 219.5 133 81.2
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 2.0e-55 219.2 131 80.9
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 2.0e-55 219.2 133 80.5
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 2.0e-55 219.2 133 77.4
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 2.5e-55 218.8 133 79.7
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 9.7e-55 216.9 133 78.9
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 2.8e-54 215.3 133 78.2
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 2.8e-54 215.3 132 78.0
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 6.3e-54 214.2 133 75.9
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 6.3e-54 214.2 133 76.7
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 6.3e-54 214.2 133 76.7
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 6.3e-54 214.2 133 75.9
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 1.4e-53 213.0 131 76.3
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 1.4e-53 213.0 132 76.5
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 1.8e-53 212.6 131 79.4
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 1.8e-53 212.6 141 73.0
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 1.8e-53 212.6 133 77.4
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 2.4e-53 212.2 133 75.2
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 3.1e-53 211.8 133 80.5
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 4.1e-53 211.5 133 75.9
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 5.3e-53 211.1 131 74.8
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 5.3e-53 211.1 131 78.6
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 1.2e-52 209.9 136 75.0
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 1.5e-52 209.5 131 74.0
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 1.5e-52 209.5 133 75.9
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 1.5e-52 209.5 127 77.2
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 2.0e-52 209.1 133 75.2
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 2.0e-52 209.1 133 75.2
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 2.6e-52 208.8 133 75.2
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 2.6e-52 208.8 130 78.5
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 3.4e-52 208.4 131 73.3
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 2.9e-51 205.3 125 75.2
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 5.0e-51 204.5 125 76.0
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 5.0e-51 204.5 125 76.0
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 5.0e-51 204.5 126 75.4
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 6.5e-51 204.1 131 78.6
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 1.9e-50 202.6 129 77.5
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 2.5e-50 202.2 123 76.4
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 3.2e-50 201.8 132 75.8
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 4.2e-50 201.4 133 73.7
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 5.5e-50 201.1 131 75.6
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 9.4e-50 200.3 133 73.7
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 9.4e-50 200.3 131 74.8
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 1.2e-49 199.9 131 74.8
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 1.2e-49 199.9 131 74.8
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 1.2e-49 199.9 131 74.8
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 1.2e-49 199.9 131 74.8
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 2.7e-49 198.7 131 74.8
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 2.7e-49 198.7 130 72.3
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 2.7e-49 198.7 132 69.7
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 2.7e-49 198.7 131 74.8
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 4.7e-49 198.0 131 74.0
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 4.7e-49 198.0 132 70.5
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 4.7e-49 198.0 129 72.9
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 4.7e-49 198.0 133 75.2
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 7.9e-49 197.2 125 77.6
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 7.9e-49 197.2 131 73.3
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 7.9e-49 197.2 134 70.1
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 1.8e-48 196.1 131 73.3
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 1.8e-48 196.1 132 68.2
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 1.8e-48 196.1 131 70.2
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 1.8e-48 196.1 132 68.9
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 3.9e-48 194.9 133 72.2
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 1.1e-47 193.4 133 66.2
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 1.1e-47 193.4 133 67.7
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 1.5e-47 193.0 131 69.5
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 2.0e-47 192.6 140 70.0
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 3.3e-47 191.8 141 69.5
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 4.4e-47 191.4 132 65.9
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 5.7e-47 191.0 140 68.6
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 5.7e-47 191.0 129 69.8
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 5.7e-47 191.0 131 68.7
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 7.4e-47 190.7 144 68.1
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 7.4e-47 190.7 129 69.8
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 1.3e-46 189.9 133 68.4
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 1.7e-46 189.5 140 67.9
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 2.8e-46 188.7 138 68.1
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 2.8e-46 188.7 138 68.1
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 4.8e-46 188.0 133 66.2
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 1.4e-45 186.4 133 70.7
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 1.8e-45 186.0 127 69.3
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 4.5e-44 181.4 132 66.7
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 7.7e-44 180.6 158 55.7
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 2.2e-43 179.1 132 65.9
SalBow5G1163 Salvia bowleyana HOM05D005138 ORTHO05D006318 2.5e-42 175.6 172 54.7
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 1.4e-40 169.9 131 65.6
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 2.3e-40 169.1 133 64.7
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 5.2e-40 167.9 133 60.9
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 4.4e-39 164.9 104 78.8
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 7.7e-36 154.1 131 58.8
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 1.7e-35 152.9 130 57.7
Actinidia38920 Actinidia chinensis HOM05D005138 ORTHO05D006318 1.1e-34 150.2 131 64.1
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 3.2e-34 148.7 129 57.4
GSVIVG01036643001 Vitis vinifera HOM05D005138 ORTHO05D006318 1.6e-33 146.4 95 71.6
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 2.7e-33 145.6 129 55.8
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 1.2e-31 140.2 134 52.2
PGSC0003DMG400005271 Solanum tuberosum HOM05D005138 ORTHO05D006318 6.3e-30 134.4 93 65.6
Gorai.004G120800 Gossypium raimondii HOM05D005138 ORTHO05D006318 5.5e-26 121.3 75 78.7
ClCG05G026950 Citrullus lanatus HOM05D005138 ORTHO05D006318 1.2e-25 120.2 76 72.4
COL.COLO4_20706 Corchorus olitorius HOM05D005138 ORTHO05D006318 3.6e-25 118.6 71 80.3
Gohir.A10G188200 Gossypium hirsutum HOM05D005138 ORTHO05D006318 4.7e-25 118.2 75 77.3
Lj2A602G38 Lonicera japonica HOM05D005138 ORTHO05D006318 6.1e-25 117.9 71 80.3
Lalb_Chr19g0132971 Lupinus albus HOM05D005138 ORTHO05D006318 2.3e-24 115.9 72 75.0
Rhsim09G0131900 Rhododendron simsii HOM05D005138 ORTHO05D006318 6.8e-24 114.4 72 76.4
MD07G1046900 Malus domestica HOM05D005138 ORTHO05D006318 2.0e-23 112.8 62 83.9
Gohir.D03G123000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 2.6e-23 112.5 71 77.5
ClCG00G004230 Citrullus lanatus HOM05D005138 ORTHO05D006318 7.5e-23 110.9 62 83.9
ClCG05G026940 Citrullus lanatus HOM05D005138 ORTHO05D006318 7.5e-23 110.9 62 83.9
COL.COLO4_20705 Corchorus olitorius HOM05D005138 ORTHO05D006318 1.4e-21 106.7 62 79.0
BcaC01g04057 Brassica carinata HOM05D005138 ORTHO05D006318 1.8e-21 106.3 70 72.9
PGSC0003DMG401025557 Solanum tuberosum HOM05D005138 ORTHO05D006318 2.4e-21 105.9 72 66.7
Nn7g36804 Nelumbo nucifera HOM05D005138 ORTHO05D006318 4.1e-21 105.1 65 75.4
SMO364G0517 Selaginella moellendorffii HOM05D005138 ORTHO05D006318 5.4e-21 104.8 127 42.5
CAN.G575.4 Capsicum annuum HOM05D005138 ORTHO05D006318 7.7e-20 100.9 77 59.7
RcHm_v2.0_Chr1g0325941 Rosa chinensis HOM05D005138 ORTHO05D006318 1.3e-19 100.1 78 62.8
Lalb_Chr19g0132981 Lupinus albus HOM05D005138 ORTHO05D006318 6.8e-16 87.8 64 65.6
SEGI_36145 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 2.6e-15 85.9 74 58.1
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 3.4e-15 85.5 77 55.8
AUR62042115 Chenopodium quinoa HOM05D005138 ORTHO05D006318 5.4e-13 78.2 53 69.8
Oeu064133.1 Olea europaea HOM05D005138 ORTHO05D006318 2.7e-12 75.9 56 60.7
MCO10G366 Micromonas commoda HOM05D005138 ORTHO05D006318 4.5e-12 75.1 116 35.3
VMungo0464G2031 Vigna mungo HOM05D005138 ORTHO05D011906 6.6e-11 71.2 58 56.9
SEGI_02182 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 1.2e-09 67.0 74 41.9
Cre12.g555250 Chlamydomonas reinhardtii HOM05D005138 ORTHO05D006318 7.5e-07 57.8 112 27.7
PGSC0003DMG400003395 Solanum tuberosum HOM05D005138 ORTHO05D006318 7.5e-07 57.8 74 39.2
PRCOL_00003180 Prasinoderma coloniale HOM05D000737 ORTHO05D000581 1.3e-06 57.0 104 26.9


User provided reference genes

Program Settings