Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 4.9e-208 727.6 384 100.0
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 2.1e-134 483.0 377 68.4
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 3.7e-131 472.2 366 71.0
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 7.0e-130 468.0 377 66.6
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.8e-128 462.2 387 64.3
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 7.2e-127 458.0 387 64.1
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 6.7e-125 451.4 367 67.0
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 4.4e-124 448.7 384 63.5
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.1e-122 444.1 376 64.1
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 1.3e-120 437.2 385 61.8
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 4.2e-119 432.2 384 60.2
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 3.6e-118 429.1 377 62.9
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 3.4e-116 422.5 386 59.3
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 3.5e-113 412.5 386 58.5
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 4.5e-113 412.1 385 61.0
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 2.9e-112 409.5 384 58.9
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 5.0e-112 408.7 376 60.1
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 1.1e-111 407.5 331 67.7
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 9.5e-111 404.4 384 59.1
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 9.5e-111 404.4 374 58.6
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 2.7e-110 402.9 386 58.8
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 1.4e-109 400.6 375 57.3
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 1.4e-109 400.6 375 57.3
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.8e-109 400.2 375 58.1
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 1.2e-108 397.5 385 57.1
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 2.6e-108 396.4 375 57.6
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 2.6e-108 396.4 377 58.6
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 1.3e-107 394.0 364 58.2
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 2.8e-107 392.9 385 59.5
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 2.8e-107 392.9 341 60.4
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 3.1e-106 389.4 384 56.8
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 2.0e-105 386.7 375 55.7
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 1.7e-104 383.6 386 58.5
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 2.5e-103 379.8 376 56.6
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 3.3e-103 379.4 371 55.5
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 5.6e-103 378.6 375 57.1
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 2.1e-102 376.7 384 54.7
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.6e-102 375.9 362 58.3
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.0e-101 374.4 362 58.0
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 1.4e-101 374.0 361 56.5
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 4.4e-100 369.0 384 53.9
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 9.8e-100 367.9 376 55.3
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 9.8e-100 367.9 376 55.3
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 9.8e-100 367.9 384 54.9
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.2e-99 366.7 362 56.6
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.2e-99 366.7 376 54.8
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 4.9e-99 365.5 416 51.7
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.4e-99 365.2 375 53.1
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 1.1e-98 364.4 384 53.4
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.4e-98 364.0 384 53.4
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 4.1e-98 362.5 384 52.9
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 7.0e-98 361.7 405 53.8
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 1.2e-97 360.9 314 60.8
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 5.0e-96 355.5 384 51.8
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 5.0e-96 355.5 347 56.2
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 6.6e-96 355.1 385 53.8
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 8.6e-96 354.8 385 53.5
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 7.3e-95 351.7 375 52.3
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 7.3e-95 351.7 372 53.8
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 9.5e-95 351.3 375 52.0
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 1.2e-94 350.9 384 52.9
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 2.8e-94 349.7 384 52.6
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 6.2e-94 348.6 384 52.6
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 8.0e-94 348.2 375 52.3
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 1.0e-93 347.8 330 60.3
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 1.8e-93 347.1 331 59.8
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 3.1e-93 346.3 373 52.5
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 2.6e-92 343.2 384 51.0
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 4.4e-92 342.4 376 53.2
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 7.5e-92 341.7 384 51.3
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 1.3e-91 340.9 361 51.8
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 1.4e-90 337.4 384 50.5
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 1.9e-90 337.0 357 52.9
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 1.2e-89 334.3 355 54.6
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 1.6e-89 334.0 384 50.0
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 2.7e-89 333.2 374 51.1
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 6.0e-89 332.0 384 51.3
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 1.7e-88 330.5 373 50.9
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 3.0e-88 329.7 384 49.5
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 3.0e-88 329.7 384 50.3
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 5.0e-88 328.9 334 54.8
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 6.6e-88 328.6 380 48.2
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 2.5e-87 326.6 371 50.1
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 4.3e-87 325.9 376 52.1
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 2.1e-86 323.6 316 56.6
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 3.6e-86 322.8 375 50.7
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 3.6e-86 322.8 375 48.5
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 4.7e-86 322.4 377 51.7
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 5.2e-85 318.9 377 51.7
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 5.2e-85 318.9 378 47.9
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 8.9e-85 318.2 385 49.1
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 8.9e-85 318.2 373 50.4
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 2.0e-84 317.0 377 47.5
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 5.8e-84 315.5 375 46.9
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 1.3e-83 314.3 380 47.6
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 2.2e-83 313.5 381 49.3
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 8.3e-83 311.6 385 48.6
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 1.9e-82 310.5 375 48.0
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 5.4e-82 308.9 333 54.4
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 1.6e-81 307.4 377 46.9
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 1.3e-80 304.3 375 46.9
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 1.7e-80 303.9 374 47.3
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 1.7e-80 303.9 374 47.3
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 6.6e-80 302.0 334 51.2
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 8.6e-80 301.6 381 47.5
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 1.9e-79 300.4 375 46.9
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 3.3e-79 299.7 376 45.5
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 3.3e-79 299.7 376 45.5
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 5.6e-79 298.9 375 46.1
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 5.6e-79 298.9 375 46.1
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 9.5e-79 298.1 366 47.3
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 2.1e-78 297.0 375 46.4
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 3.6e-78 296.2 376 47.1
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 4.7e-78 295.8 375 46.1
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 1.1e-77 294.7 379 46.7
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 2.3e-77 293.5 375 46.1
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 6.8e-77 292.0 356 50.3
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 3.4e-76 289.7 376 45.7
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 5.8e-76 288.9 376 45.7
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 5.8e-76 288.9 376 45.7
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 2.7e-73 280.0 339 46.9
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 6.6e-72 275.4 455 39.8
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 2.4e-69 266.9 288 50.3
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 8.9e-69 265.0 381 44.1
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 2.2e-67 260.4 353 46.5
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 1.6e-65 254.2 385 41.6
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 2.1e-65 253.8 289 49.5
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 6.0e-65 252.3 335 46.3
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 2.8e-62 243.4 288 50.7
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 2.5e-55 220.3 204 57.4
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 5.9e-36 156.0 134 64.9
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 1.9e-34 151.0 132 65.9
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 2.8e-30 137.1 380 33.4
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.4e-28 130.2 142 46.5
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.3e-27 128.3 253 34.8
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 2.9e-27 127.1 378 30.4
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 6.5e-27 125.9 206 40.8
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 8.5e-27 125.6 158 46.2
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 8.5e-27 125.6 394 31.0
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.1e-26 125.2 144 43.8
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 2.5e-26 124.0 90 61.1
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.1e-25 120.9 136 45.6
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 6.7e-24 115.9 152 41.4
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.0e-23 114.4 389 28.3
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 3.3e-23 113.6 385 28.3
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 1.9e-18 97.8 248 29.4
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 9.4e-18 95.5 121 49.6
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.8e-16 91.3 127 37.8
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 9.7e-15 85.5 83 54.2
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 9.7e-15 85.5 83 54.2
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 3.2e-10 70.5 90 44.4
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 1.2e-09 68.6 69 53.6
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 1.2e-09 68.6 69 52.2
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 1.6e-09 68.2 64 56.2
Cre17.g708350 Chlamydomonas reinhardtii HOM05D002428 ORTHO05D005085 2.7e-09 67.4 377 23.9
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 1.0e-08 65.5 69 50.7
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 5.7e-07 59.7 58 50.0
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 7.5e-07 59.3 63 47.6
Oeu022108.1 Olea europaea HOM05D002428 ORTHO05D005085 1.3e-06 58.5 54 53.7


User provided reference genes

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