Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 3.5e-197 691.4 343 100.0
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 6.4e-119 431.4 333 69.7
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 3.8e-111 405.6 317 68.5
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 4.8e-106 388.7 338 62.4
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 1.4e-105 387.1 344 60.2
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.2e-104 384.0 337 61.7
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 1.5e-104 383.6 337 61.7
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 2.6e-104 382.9 306 64.4
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 5.9e-104 381.7 347 59.7
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.3e-103 380.6 338 60.4
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 1.7e-103 380.2 345 60.6
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 2.9e-103 379.4 341 59.8
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 8.5e-103 377.9 333 61.0
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 8.5e-103 377.9 348 58.9
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 1.1e-102 377.5 297 66.0
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.9e-102 376.7 297 65.3
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 3.2e-102 375.9 338 59.2
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 3.2e-102 375.9 302 63.9
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 4.2e-102 375.6 301 64.8
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 7.2e-102 374.8 346 59.2
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.6e-101 373.6 338 59.2
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.7e-101 372.9 338 59.5
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 6.1e-101 371.7 297 62.3
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 5.1e-100 368.6 300 62.0
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 6.7e-100 368.2 344 57.8
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 8.8e-100 367.9 297 62.3
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 2.5e-99 366.3 331 59.5
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 2.5e-99 366.3 331 59.5
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 2.5e-99 366.3 339 57.8
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 2.5e-99 366.3 328 61.3
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.3e-99 365.9 331 61.0
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 7.4e-99 364.8 329 59.0
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 7.4e-99 364.8 311 59.2
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 7.4e-99 364.8 293 63.5
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 9.7e-99 364.4 342 57.9
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 1.7e-98 363.6 302 61.6
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 2.2e-98 363.2 302 62.3
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 4.8e-98 362.1 297 60.3
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 6.3e-98 361.7 297 64.3
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 6.3e-98 361.7 336 56.8
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 1.4e-97 360.5 330 57.3
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 2.4e-97 359.8 338 56.8
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 6.9e-97 358.2 319 59.6
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 9.1e-97 357.8 336 58.6
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 1.2e-96 357.5 331 56.8
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 2.0e-96 356.7 333 57.4
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 2.0e-96 356.7 343 56.3
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 2.6e-96 356.3 341 57.8
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 2.6e-96 356.3 326 58.0
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 1.0e-95 354.4 297 62.3
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 1.3e-95 354.0 324 57.4
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 2.2e-95 353.2 306 58.8
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 2.9e-95 352.8 330 57.9
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 5.0e-95 352.1 331 57.7
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 5.0e-95 352.1 329 57.4
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 1.1e-94 350.9 341 54.5
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 9.4e-94 347.8 365 55.1
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 1.2e-93 347.4 328 56.1
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.2e-93 347.4 297 58.2
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.2e-93 347.4 297 58.2
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.6e-93 347.1 302 58.9
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 2.1e-93 346.7 347 54.5
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.1e-93 346.7 297 61.6
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 2.7e-93 346.3 326 57.4
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 2.7e-93 346.3 331 56.2
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 4.7e-93 345.5 343 55.4
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 7.9e-93 344.7 302 59.3
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 3.0e-92 342.8 317 55.8
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.9e-92 342.4 297 60.6
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 2.0e-91 340.1 299 58.5
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 3.3e-91 339.3 324 55.2
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 5.7e-91 338.6 332 55.1
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 7.4e-91 338.2 333 54.4
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 1.3e-90 337.4 340 53.8
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 1.3e-90 337.4 321 55.1
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 4.8e-90 335.5 316 57.0
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 1.4e-89 334.0 337 54.0
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.8e-89 333.6 294 58.5
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 2.4e-89 333.2 336 53.6
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 5.3e-89 332.0 294 57.8
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 9.1e-89 331.3 337 54.0
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 9.1e-89 331.3 294 58.2
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 9.1e-89 331.3 321 55.8
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 1.2e-88 330.9 337 54.3
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 1.5e-88 330.5 333 53.5
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 2.6e-88 329.7 355 52.1
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 2.6e-88 329.7 348 53.7
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 3.5e-88 329.3 337 53.7
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 4.5e-88 328.9 300 57.0
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 7.7e-88 328.2 342 52.0
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.2e-87 326.6 297 56.2
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.2e-87 326.6 297 56.2
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 6.5e-87 325.1 288 60.4
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 8.5e-87 324.7 297 55.9
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 1.1e-86 324.3 302 56.3
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 1.4e-86 323.9 346 52.0
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 1.9e-86 323.6 303 55.8
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 4.2e-86 322.4 313 55.3
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 9.4e-86 321.2 301 55.5
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 2.7e-85 319.7 309 53.4
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 3.6e-85 319.3 297 55.6
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 6.1e-85 318.5 308 54.2
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.4e-84 317.4 317 53.0
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 5.2e-84 315.5 304 60.9
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 6.7e-84 315.1 362 48.1
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.6e-83 313.2 334 51.8
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.6e-83 313.2 303 53.8
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 2.8e-82 309.7 275 58.2
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.4e-81 307.4 346 48.6
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 1.6e-80 303.9 305 51.8
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 3.5e-80 302.8 336 47.3
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 5.9e-80 302.0 298 51.7
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 1.7e-79 300.4 286 58.0
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.9e-79 299.7 324 50.0
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 5.0e-79 298.9 343 47.8
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 2.1e-77 293.5 341 49.0
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 5.0e-71 272.3 300 48.7
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.5e-70 270.0 301 48.5
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 8.0e-69 265.0 159 79.9
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 3.4e-67 259.6 279 51.3
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 3.7e-66 256.1 317 44.2
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 9.1e-65 251.5 296 48.0
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 1.8e-60 237.3 318 46.5
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 2.3e-60 236.9 298 42.6
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 7.0e-57 225.3 294 38.8
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 2.9e-55 219.9 293 38.9
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 3.3e-54 216.5 294 37.8
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.8e-53 213.4 155 67.7
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 6.4e-50 202.2 302 38.4
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 1.4e-49 201.1 236 48.3
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 1.3e-47 194.5 288 40.3
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 5.0e-47 192.6 155 63.9
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 2.4e-33 147.1 114 64.0
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 4.1e-33 146.4 99 74.7
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 8.1e-29 132.1 167 42.5
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.4e-28 131.3 84 81.0
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 3.1e-28 130.2 289 29.1
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 2.6e-27 127.1 73 79.5
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 7.6e-27 125.6 146 52.1
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 1.3e-26 124.8 122 54.1
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 1.9e-25 120.9 125 49.6
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 2.4e-25 120.6 116 51.7
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 3.5e-24 116.7 76 72.4
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 3.9e-23 113.2 87 60.9
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 3.6e-21 106.7 104 55.8
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 6.4e-18 95.9 123 44.7
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 4.6e-16 89.7 58 74.1
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 1.7e-15 87.8 58 69.0
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 5.1e-15 86.3 42 85.7
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.8e-13 80.5 45 73.3
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.8e-12 77.8 100 46.0
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 7.1e-09 65.9 57 52.6
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.0e-07 62.0 92 33.7
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 2.5e-06 57.4 65 40.0


User provided reference genes

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