Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0418 Trochodendron aralioides HOM05D002516 ORTHO05D002703 8.3e-64 246.9 127 100.0
TAR365G0852 Trochodendron aralioides HOM05D002516 ORTHO05D002703 9.6e-28 127.1 116 62.9
Nn3g20050 Nelumbo nucifera HOM05D002516 ORTHO05D002703 2.9e-24 115.5 113 61.9
Nn1g07949 Nelumbo nucifera HOM05D002516 ORTHO05D002703 1.6e-22 109.8 107 60.7
TAR636G2916 Trochodendron aralioides HOM05D002516 ORTHO05D002703 2.3e-21 105.9 110 53.6
CSS0033368 Camellia sinensis var. sinensis HOM05D002516 ORTHO05D002703 9.0e-18 94.0 104 52.9
Dinv12654 Davidia involucrata HOM05D002516 ORTHO05D002703 9.0e-18 94.0 104 55.8
Dinv19179 Davidia involucrata HOM05D002516 ORTHO05D002703 5.9e-17 91.3 105 56.2
Hma1.2p1_0226F.1_g095436 Hydrangea macrophylla HOM05D002516 ORTHO05D002703 1.0e-16 90.5 104 55.8
Hma1.2p1_2668F.1_g326570 Hydrangea macrophylla HOM05D002516 ORTHO05D002703 5.0e-16 88.2 104 54.8
MBI07_g22277_MAGBIO Magnolia biondii HOM05D002516 ORTHO05D002703 2.5e-15 85.9 112 50.0
Nitab4.5_0000045g0450 Nicotiana tabacum HOM05D002516 ORTHO05D002703 1.2e-14 83.6 104 49.0
Actinidia09470 Actinidia chinensis HOM05D002516 ORTHO05D002703 1.6e-14 83.2 104 51.9
Peaxi162Scf00238g00046 Petunia axillaris HOM05D002516 ORTHO05D002703 2.1e-14 82.8 104 49.0
Nitab4.5_0007846g0010 Nicotiana tabacum HOM05D002516 ORTHO05D002703 4.6e-14 81.6 122 45.9
Actinidia39434 Actinidia chinensis HOM05D002516 ORTHO05D002703 6.1e-14 81.3 104 51.9
Ciclev10022263m.g Citrus clementina HOM05D002516 ORTHO05D002703 1.4e-13 80.1 121 47.1
Actinidia30057 Actinidia chinensis HOM05D002516 ORTHO05D002703 2.3e-13 79.3 123 46.3
Rhsim13G0047300 Rhododendron simsii HOM05D002516 ORTHO05D002703 3.9e-13 78.6 104 47.1
vmacro02780 Vaccinium macrocarpon HOM05D002516 ORTHO05D002703 1.9e-12 76.3 94 45.7
Ca_03039_v3 Cicer arietinum L. HOM05D002516 ORTHO05D002703 5.7e-12 74.7 107 50.5
Atru.chr6.1421 Acer truncatum HOM05D002516 ORTHO05D002703 9.7e-12 73.9 101 53.5
Hma1.2p1_0149F.1_g066360 Hydrangea macrophylla HOM05D002516 ORTHO05D002703 1.3e-11 73.6 105 47.6
Atru.chr2.3423 Acer truncatum HOM05D002516 ORTHO05D002703 1.7e-11 73.2 102 52.9
SGA_v2.0_scaffold6G03500 Striga asiatica HOM05D002516 ORTHO05D002703 1.7e-11 73.2 115 42.6
Cc01_g16770 Coffea canephora HOM05D002516 ORTHO05D002703 2.2e-11 72.8 104 44.2
Oeu007786.2 Olea europaea HOM05D002516 ORTHO05D002703 2.2e-11 72.8 114 43.9
PGSC0003DMG400027947 Solanum tuberosum HOM05D002516 ORTHO05D002703 2.2e-11 72.8 107 44.9
Cfa004378 Carpinus fangiana HOM05D002516 ORTHO05D002703 6.3e-11 71.2 99 48.5
Aqoxy2G04001 Aquilegia oxysepala HOM05D002516 ORTHO05D002703 1.4e-10 70.1 57 63.2
CSS0005528 Camellia sinensis var. sinensis HOM05D002516 ORTHO05D002703 1.4e-10 70.1 106 50.0
Solyc09g059450.4 Solanum lycopersicum HOM05D002516 ORTHO05D002703 1.4e-10 70.1 107 43.0
Sopen09g022610 Solanum pennellii HOM05D002516 ORTHO05D002703 1.4e-10 70.1 107 43.0
Haze_15034 Corylus avellana HOM05D002516 ORTHO05D002703 1.8e-10 69.7 98 48.0
Nitab4.5_0002641g0170 Nicotiana tabacum HOM05D002516 ORTHO05D002703 1.8e-10 69.7 104 43.3
MSTRG.18838 Avicennia marina HOM05D002516 ORTHO05D002703 3.1e-10 68.9 90 43.3
Peaxi162Scf00372g01213 Petunia axillaris HOM05D002516 ORTHO05D002703 3.1e-10 68.9 122 38.5
Potri.014G191400 Populus trichocarpa HOM05D002516 ORTHO05D002703 3.1e-10 68.9 86 51.2
QL09p051749 Quercus lobata HOM05D002516 ORTHO05D002703 5.3e-10 68.2 92 46.7
QL09p052462 Quercus lobata HOM05D002516 ORTHO05D002703 5.3e-10 68.2 92 46.7
Cpa.g.sc8.125 Carica papaya HOM05D002516 ORTHO05D002703 6.9e-10 67.8 100 47.0
Rhsim01G0254000 Rhododendron simsii HOM05D002516 ORTHO05D002703 9.1e-10 67.4 89 50.6
Duzib133G1084 Durio zibethinus HOM05D002516 ORTHO05D002703 1.5e-09 66.6 86 53.5
Glyma.11G103800 Glycine max HOM05D002516 ORTHO05D002703 1.5e-09 66.6 84 51.2
Manes.13G049000 Manihot esculenta HOM05D002516 ORTHO05D002703 2.0e-09 66.2 91 49.5
HanXRQChr07g0189501 Helianthus annuus HOM05D002516 ORTHO05D002703 2.6e-09 65.9 119 42.9
Lj1C88T6 Lonicera japonica HOM05D002516 ORTHO05D002703 2.6e-09 65.9 135 33.3
Nitab4.5_0002616g0040 Nicotiana tabacum HOM05D002516 ORTHO05D002703 2.6e-09 65.9 104 42.3
Duzib138G0225 Durio zibethinus HOM05D002516 ORTHO05D002703 3.4e-09 65.5 86 54.7
Phvul.011G032000 Phaseolus vulgaris HOM05D002516 ORTHO05D002703 3.4e-09 65.5 84 48.8
Psat7g174120 Pisum sativum HOM05D002516 ORTHO05D002703 3.4e-09 65.5 90 50.0
Sopen06g002720 Solanum pennellii HOM05D002516 ORTHO05D002703 3.4e-09 65.5 93 43.0
Eucgr.K02140 Eucalyptus grandis HOM05D002516 ORTHO05D002703 4.5e-09 65.1 108 43.5
PGR083G1441 Punica granatum HOM05D002516 ORTHO05D002703 4.5e-09 65.1 101 42.6
Solyc06g007870.3 Solanum lycopersicum HOM05D002516 ORTHO05D002703 4.5e-09 65.1 93 43.0
CiPaw.02G023100 Carya illinoinensis HOM05D002516 ORTHO05D002703 5.9e-09 64.7 84 52.4
PSO017G0701 Papaver somniferum HOM05D002516 ORTHO05D002703 5.9e-09 64.7 103 41.7
PSO017G5490 Papaver somniferum HOM05D002516 ORTHO05D002703 7.7e-09 64.3 103 43.7
Manes.12G046900 Manihot esculenta HOM05D002516 ORTHO05D002703 1.3e-08 63.5 91 47.3
vmacro14740 Vaccinium macrocarpon HOM05D002516 ORTHO05D002703 1.7e-08 63.2 99 46.5
Duzib211G0537 Durio zibethinus HOM05D002516 ORTHO05D002703 2.2e-08 62.8 86 52.3
Prupe.8G199600 Prunus persica HOM05D002516 ORTHO05D002703 2.2e-08 62.8 90 50.0
Glyma.12G028700 Glycine max HOM05D002516 ORTHO05D002703 2.9e-08 62.4 100 43.0
Gorai.007G156200 Gossypium raimondii HOM05D002516 ORTHO05D002703 2.9e-08 62.4 100 50.0
VMungo1127G1407 Vigna mungo HOM05D002516 ORTHO05D002703 2.9e-08 62.4 84 46.4
DCAR_004734 Daucus carota HOM05D002516 ORTHO05D002703 3.8e-08 62.0 122 41.8
Gohir.D11G145700 Gossypium hirsutum HOM05D002516 ORTHO05D002703 3.8e-08 62.0 86 53.5
Migut.D02502 Erythranthe guttata HOM05D002516 ORTHO05D002703 5.0e-08 61.6 92 47.8
Gohir.A11G139500 Gossypium hirsutum HOM05D002516 ORTHO05D002703 5.0e-08 61.6 100 50.0
TPR.G21567 Trifolium pratense HOM05D002516 ORTHO05D002703 5.0e-08 61.6 111 46.8
CANSAT01G2920 Cannabis sativa HOM05D002516 ORTHO05D002703 6.5e-08 61.2 105 44.8
PGSC0003DMG400003404 Solanum tuberosum HOM05D002516 ORTHO05D002703 8.5e-08 60.8 90 41.1
Thecc.01G221100 Theobroma cacao HOM05D002516 ORTHO05D002703 8.5e-08 60.8 90 48.9
Oeu051536.1 Olea europaea HOM05D002516 ORTHO05D002703 1.1e-07 60.5 69 52.2
CANSAT01G0325 Cannabis sativa HOM05D002516 ORTHO05D002703 1.4e-07 60.1 105 44.8
PSO063G1979 Papaver somniferum HOM05D002516 ORTHO05D002703 1.4e-07 60.1 110 40.0
Actinidia11450 Actinidia chinensis HOM05D002516 ORTHO05D002703 1.9e-07 59.7 92 44.6
CDE05G1738 Ceratophyllum demersum HOM05D002516 ORTHO05D002703 1.9e-07 59.7 67 50.7
AUR62001129 Chenopodium quinoa HOM05D002516 ORTHO05D002703 1.9e-07 59.7 107 43.0
Sed0020045 Sechium edule HOM05D002516 ORTHO05D002703 1.9e-07 59.7 105 48.6
Hund05574 Selenicereus undatus HOM05D002516 ORTHO05D002703 1.9e-07 59.7 102 46.1
Medtr4g074240 Medicago truncatula HOM05D002516 ORTHO05D002703 2.5e-07 59.3 128 40.6
CiPaw.01G049600 Carya illinoinensis HOM05D002516 ORTHO05D002703 3.2e-07 58.9 100 47.0
RcHm_v2.0_Chr6g0284181 Rosa chinensis HOM05D002516 ORTHO05D002703 3.2e-07 58.9 98 46.9
ClCG07G002050 Citrullus lanatus HOM05D002516 ORTHO05D002703 5.5e-07 58.2 112 42.0
TWI36G0113 Tripterygium wilfordii HOM05D002516 ORTHO05D002703 1.2e-06 57.0 88 45.5
AUR62016552 Chenopodium quinoa HOM05D002516 ORTHO05D002703 2.1e-06 56.2 108 42.6
CsaV3_3G030010 Cucumis sativus L. HOM05D002516 ORTHO05D002703 2.1e-06 56.2 103 46.6
vmacro15556 Vaccinium macrocarpon HOM05D002516 ORTHO05D020235 2.1e-06 56.2 45 60.0
MELO3C022715.2 Cucumis melo HOM05D002516 ORTHO05D002703 2.7e-06 55.8 103 45.6
Haze_11641 Corylus avellana HOM05D002516 ORTHO05D002703 4.7e-06 55.1 72 43.1
Dinv38194 Davidia involucrata HOM05D002516 ORTHO05D002703 4.7e-06 55.1 66 47.0
HanXRQChr10g0279491 Helianthus annuus HOM05D002516 ORTHO05D002703 4.7e-06 55.1 101 40.6
Gohir.A07G158100 Gossypium hirsutum HOM05D002516 ORTHO05D002703 7.9e-06 54.3 106 40.6
Lj6A392G26 Lonicera japonica HOM05D002516 ORTHO05D020235 7.9e-06 54.3 93 44.1
SHI14525 Sapria himalayana HOM05D002516 ORTHO05D002703 7.9e-06 54.3 88 46.6


User provided reference genes

Program Settings