Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 5.8e-228 793.9 399 100.0
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 4.8e-198 694.5 391 87.2
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 3.9e-192 674.9 401 82.5
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 6.6e-192 674.1 399 83.2
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 4.3e-191 671.4 401 82.0
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 7.3e-191 670.6 401 82.8
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 9.6e-191 670.2 400 82.2
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 1.3e-190 669.8 400 83.0
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 4.8e-190 667.9 401 81.5
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 1.8e-189 666.0 400 81.8
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 2.4e-189 665.6 397 81.6
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 4.0e-189 664.8 400 82.5
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 2.6e-188 662.1 400 80.8
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 7.6e-188 660.6 401 80.3
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 9.9e-188 660.2 401 81.5
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 3.8e-187 658.3 400 80.2
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 4.9e-187 657.9 401 80.8
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 1.1e-186 656.8 398 80.9
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 2.4e-186 655.6 400 81.0
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.4e-186 655.6 401 79.8
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 5.4e-186 654.4 400 79.5
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 9.3e-186 653.7 401 79.3
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 1.2e-185 653.3 400 80.5
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 2.1e-185 652.5 398 80.4
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 4.6e-185 651.4 401 79.1
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 6.0e-185 651.0 401 79.6
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 6.0e-185 651.0 401 79.6
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 1.0e-184 650.2 400 79.0
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 1.8e-184 649.4 400 80.5
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 3.9e-184 648.3 393 83.7
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 5.1e-184 647.9 399 79.4
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 6.7e-184 647.5 400 80.0
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.9e-183 646.0 400 79.8
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 2.5e-183 645.6 401 80.3
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 2.5e-183 645.6 402 80.1
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 3.3e-183 645.2 400 79.8
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 3.3e-183 645.2 400 78.8
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 5.6e-183 644.4 400 79.5
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 1.3e-182 643.3 400 79.5
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 1.3e-182 643.3 400 80.5
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 1.6e-182 642.9 400 78.5
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 2.1e-182 642.5 405 78.8
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 2.1e-182 642.5 400 79.0
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 2.8e-182 642.1 397 79.6
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 4.8e-182 641.3 392 80.9
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 6.2e-182 641.0 387 81.7
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 2.4e-181 639.0 400 78.5
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 6.9e-181 637.5 402 78.4
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 9.0e-181 637.1 396 79.0
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 2.0e-180 636.0 424 74.8
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 2.6e-180 635.6 400 79.0
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 1.0e-179 633.6 401 78.3
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 1.0e-179 633.6 400 77.8
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 1.7e-179 632.9 400 78.2
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 2.2e-179 632.5 408 76.7
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 2.9e-179 632.1 401 78.3
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 6.5e-179 630.9 403 77.7
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 8.4e-179 630.6 400 77.5
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 1.9e-178 629.4 432 73.4
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 1.9e-178 629.4 396 77.5
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 1.9e-178 629.4 401 78.6
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 1.6e-177 626.3 399 77.2
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 2.1e-177 625.9 403 76.9
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 2.1e-177 625.9 399 76.4
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 2.1e-177 625.9 401 77.8
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 2.1e-177 625.9 402 77.9
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 4.6e-177 624.8 403 76.7
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 4.6e-177 624.8 401 77.6
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 1.0e-176 623.6 399 77.4
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 1.0e-176 623.6 398 77.6
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.0e-176 623.6 393 78.6
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 1.0e-176 623.6 402 77.6
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 2.3e-176 622.5 400 77.0
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 2.3e-176 622.5 400 77.0
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 3.0e-176 622.1 403 75.9
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 3.0e-176 622.1 399 77.4
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 3.9e-176 621.7 400 77.0
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 5.1e-176 621.3 401 74.6
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 8.7e-176 620.5 403 76.9
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 1.1e-175 620.2 397 77.3
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 1.5e-175 619.8 400 76.8
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 2.5e-175 619.0 400 76.8
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 4.3e-175 618.2 399 76.7
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 7.4e-175 617.5 399 76.7
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 7.4e-175 617.5 419 73.0
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 1.3e-174 616.7 378 79.4
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 2.1e-174 615.9 398 76.6
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 2.8e-174 615.5 377 79.3
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 2.8e-174 615.5 398 76.6
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 3.7e-174 615.1 398 76.6
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 3.7e-174 615.1 378 79.1
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 3.7e-174 615.1 392 78.1
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 2.4e-173 612.5 399 76.2
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 4.0e-173 611.7 392 77.0
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 6.9e-173 610.9 394 76.4
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 1.2e-172 610.1 403 76.4
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 2.6e-172 609.0 377 78.5
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 1.3e-171 606.7 404 74.8
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 2.2e-171 605.9 404 75.7
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 1.4e-170 603.2 410 74.6
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 5.5e-170 601.3 452 70.8
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 2.1e-169 599.4 369 79.7
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.0e-168 597.0 496 63.9
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 1.8e-168 596.3 400 75.8
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 4.1e-165 585.1 417 71.5
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 1.2e-164 583.6 435 68.3
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 2.6e-164 582.4 440 67.7
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 1.3e-163 580.1 362 77.1
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 2.1e-161 572.8 400 72.5
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.5e-159 566.6 553 55.9
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 1.5e-156 556.6 398 69.1
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 7.7e-156 554.3 353 78.8
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 1.4e-152 543.5 326 82.5
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 8.2e-142 507.7 311 79.1
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 1.2e-140 503.8 316 81.0
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 1.5e-135 486.9 292 80.5
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 2.2e-134 483.0 305 79.0
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 2.0e-119 433.3 350 67.1
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 9.8e-119 431.0 391 56.5
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 2.9e-118 429.5 380 57.1
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 1.3e-115 420.6 295 72.9
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 1.1e-114 417.5 362 55.0
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 2.2e-110 403.3 344 55.2
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 1.1e-101 374.4 236 81.4
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 1.1e-98 364.4 349 52.1
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 1.1e-82 311.2 226 68.1
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 1.8e-80 303.9 285 50.2
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 3.6e-73 279.6 334 43.4
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 6.7e-67 258.8 366 39.1
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 1.0e-62 245.0 231 58.4
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 3.0e-59 233.4 205 63.9
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 6.7e-59 232.3 351 40.2
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 3.3e-58 229.9 271 50.6
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 8.2e-57 225.3 171 69.6
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.3e-43 180.6 99 87.9
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 5.3e-32 142.9 80 83.8
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 9.1e-32 142.1 82 82.9
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 3.8e-30 136.7 132 59.1
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 9.4e-29 132.1 81 75.3
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 8.0e-20 102.4 65 70.8
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 2.3e-19 100.9 105 45.7
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 1.2e-18 98.6 75 66.7
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 1.6e-12 78.2 61 67.2
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 3.7e-09 67.0 34 88.2
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.6e-07 61.6 51 62.7
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 2.0e-07 61.2 37 78.4
C09p57810 Brassica napus HOM05D006883 ORTHO05D008624 3.8e-06 57.0 260 24.2


User provided reference genes

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