Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 1.5e-107 392.9 196 100.0
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 3.1e-86 322.0 194 78.4
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 3.8e-84 315.1 194 77.8
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 3.8e-84 315.1 194 77.8
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 3.3e-83 312.0 194 75.8
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 1.6e-82 309.7 194 74.7
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 1.6e-82 309.7 194 75.3
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 2.1e-82 309.3 194 75.3
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 4.7e-82 308.1 194 75.3
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 1.4e-81 306.6 194 74.2
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 5.8e-80 301.2 194 72.7
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 7.0e-78 294.3 194 71.6
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 1.6e-77 293.1 194 71.6
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 2.7e-77 292.4 210 68.1
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 6.0e-77 291.2 197 71.1
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 1.7e-76 289.7 198 70.7
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 3.0e-76 288.9 197 72.6
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 3.9e-76 288.5 197 71.1
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 6.6e-76 287.7 194 70.1
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 1.1e-75 287.0 194 68.6
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 1.5e-75 286.6 197 72.1
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 7.3e-75 284.3 197 68.5
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 1.2e-74 283.5 197 70.1
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 2.1e-74 282.7 194 68.0
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 3.6e-74 282.0 194 70.1
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 8.0e-74 280.8 197 70.6
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 8.0e-74 280.8 197 68.5
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 8.0e-74 280.8 197 70.6
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 1.8e-73 279.6 197 70.1
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 1.8e-73 279.6 194 67.0
Nn044s41810 Nelumbo nucifera HOM05D001733 ORTHO05D001882 4.0e-73 278.5 195 71.8
Nn1g10086 Nelumbo nucifera HOM05D001733 ORTHO05D001882 4.0e-73 278.5 195 71.8
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 5.2e-73 278.1 197 68.0
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 8.9e-73 277.3 197 67.5
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 1.2e-72 276.9 197 68.5
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 1.5e-72 276.6 197 66.5
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 3.4e-72 275.4 194 67.0
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 3.4e-72 275.4 198 70.2
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 5.8e-72 274.6 172 76.7
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 9.8e-72 273.9 194 64.9
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 1.7e-71 273.1 196 67.9
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 2.9e-71 272.3 198 68.2
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 2.9e-71 272.3 198 67.2
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 3.7e-71 271.9 198 68.2
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 3.7e-71 271.9 198 68.2
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 4.9e-71 271.6 198 67.7
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 8.3e-71 270.8 198 67.7
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 8.3e-71 270.8 199 65.8
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 1.4e-70 270.0 197 68.0
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 2.4e-70 269.2 198 66.2
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 1.2e-69 266.9 194 64.4
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 4.6e-69 265.0 197 64.0
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 6.0e-69 264.6 197 66.0
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 7.8e-69 264.2 198 66.7
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 1.3e-68 263.5 197 66.0
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 2.3e-68 262.7 196 65.3
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 3.9e-68 261.9 197 64.5
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 3.9e-68 261.9 198 65.7
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 8.6e-68 260.8 197 62.9
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.1e-67 260.4 197 64.0
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.1e-67 260.4 197 64.0
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 1.9e-67 259.6 199 65.3
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 2.5e-67 259.2 197 65.5
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 4.3e-67 258.5 199 65.3
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 7.3e-67 257.7 195 66.7
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 1.2e-66 256.9 200 61.5
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 1.6e-66 256.5 197 62.4
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 4.7e-66 255.0 199 63.8
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 1.4e-65 253.4 177 66.7
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 2.3e-65 252.7 200 61.0
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 4.0e-65 251.9 200 61.0
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 5.2e-65 251.5 200 60.5
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 5.2e-65 251.5 200 60.5
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 1.2e-64 250.4 200 60.0
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 1.5e-64 250.0 200 60.0
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 4.4e-64 248.4 200 60.0
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 5.8e-64 248.1 200 60.0
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 5.8e-64 248.1 200 61.5
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 7.5e-64 247.7 200 60.0
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 7.5e-64 247.7 200 60.0
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 7.5e-64 247.7 200 60.0
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 1.3e-63 246.9 200 60.0
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 1.7e-63 246.5 200 62.5
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 2.2e-63 246.1 200 59.5
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 4.9e-63 245.0 200 59.0
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 6.4e-63 244.6 200 59.0
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 6.4e-63 244.6 200 59.0
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 8.3e-63 244.2 200 58.5
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 4.6e-61 238.4 199 59.8
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 7.8e-61 237.7 199 59.8
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 1.3e-60 236.9 199 59.8
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 4.3e-59 231.9 199 58.3
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 1.6e-58 229.9 199 57.3
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 1.4e-57 226.9 157 68.8
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 4.0e-57 225.3 157 68.2
vmacro13603 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 4.0e-57 225.3 194 58.2
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 6.4e-55 218.0 199 53.3
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 2.4e-54 216.1 199 59.3
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 7.3e-51 204.5 170 60.0
Ah.13g073670 Amaranthus hybridus HOM05D001733 ORTHO05D001882 3.6e-50 202.2 163 60.7
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 1.4e-46 190.3 183 55.7
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 1.7e-44 183.3 130 69.2
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 5.1e-44 181.8 134 67.9
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 5.1e-44 181.8 137 64.2
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 8.1e-42 174.5 197 50.3
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 1.3e-39 167.2 112 71.4
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 4.8e-34 148.7 100 69.0
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 1.8e-33 146.7 217 36.9
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 2.9e-31 139.4 100 66.0
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 1.1e-30 137.5 95 66.3
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 7.9e-29 131.3 96 63.5
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 4.5e-24 115.5 86 64.0
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 1.3e-23 114.0 100 58.0
Zm00001eb385930 Zea mays HOM05D022646 ORTHO05D001882 2.2e-23 113.2 108 58.3
Zm00001eb436200 Zea mays HOM05D022646 ORTHO05D001882 2.2e-23 113.2 108 58.3
Zm00001eb436250 Zea mays HOM05D022646 ORTHO05D001882 2.2e-23 113.2 108 58.3
Zm00001eb436290 Zea mays HOM05D022646 ORTHO05D001882 2.2e-23 113.2 108 58.3
Zm00001eb436330 Zea mays HOM05D022646 ORTHO05D001882 2.2e-23 113.2 108 58.3
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 7.4e-19 98.2 134 46.3
arahy.Tifrunner.gnm1.ann1.3YR680 Arachis hypogaea HOM05D001733 ORTHO05D001882 1.3e-18 97.4 71 62.0
C04p32130 Brassica napus HOM05D001733 ORTHO05D001882 1.0e-12 77.8 51 62.7
BcaC02g09516 Brassica carinata HOM05D001733 ORTHO05D001882 1.4e-12 77.4 51 62.7
BolC4t25944H Brassica oleracea HOM05D001733 ORTHO05D001882 1.4e-12 77.4 51 62.7
A01p19710 Brassica napus HOM05D001733 ORTHO05D001882 3.0e-12 76.3 55 58.2
C03p74560 Brassica napus HOM05D001733 ORTHO05D001882 3.9e-12 75.9 51 62.7
C04p54460 Brassica napus HOM05D001733 ORTHO05D001882 5.1e-12 75.5 51 60.8
ATR0660G006 Amborella trichopoda HOM05D001733 ORTHO05D001882 2.2e-10 70.1 48 72.9
arahy.Tifrunner.gnm1.ann1.BIR89S Arachis hypogaea HOM05D001903 ORTHO05D001847 1.5e-08 63.9 70 52.9
Mapoly0051s0114 Marchantia polymorpha HOM05D052641 ORTHO05D001882 4.5e-08 62.4 67 47.8
arahy.Tifrunner.gnm1.ann1.897E8M Arachis hypogaea HOM05D001733 ORTHO05D001882 1.9e-06 57.0 37 62.2
HanXRQChr05g0139891 Helianthus annuus HOM05D001733 ORTHO05D001882 1.9e-06 57.0 54 55.6
Medtr0002s0530 Medicago truncatula HOM05D000216 ORTHO05D003638 4.2e-06 55.8 207 23.7


User provided reference genes

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