Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 1.5e-311 1072.0 538 100.0
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 6.3e-254 880.6 542 81.9
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 6.3e-246 854.0 539 80.3
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 1.6e-244 849.4 529 81.1
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 1.1e-242 843.2 544 78.9
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 1.6e-241 839.3 542 77.7
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 2.7e-241 838.6 536 78.4
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 3.6e-241 838.2 545 77.8
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 8.8e-240 833.6 539 78.1
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 1.3e-238 829.7 530 78.7
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 1.4e-237 826.2 550 77.5
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 1.4e-237 826.2 539 77.2
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 4.1e-237 824.7 534 78.7
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 4.5e-236 821.2 530 78.7
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 5.9e-236 820.8 535 77.9
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 3.8e-235 818.1 536 77.8
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 1.9e-234 815.8 536 77.8
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 3.3e-234 815.1 530 77.5
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 4.2e-234 814.7 601 71.9
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 5.5e-234 814.3 540 77.0
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 1.6e-233 812.8 543 77.5
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 4.7e-233 811.2 543 77.2
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 8.0e-233 810.4 527 76.9
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 3.0e-232 808.5 526 77.0
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 6.8e-232 807.4 535 75.9
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 9.8e-231 803.5 537 76.2
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 9.8e-231 803.5 536 76.7
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 3.7e-230 801.6 535 75.9
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 6.3e-230 800.8 530 75.5
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 8.3e-230 800.4 529 77.3
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 8.3e-230 800.4 530 75.7
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 1.1e-229 800.0 531 76.3
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 1.8e-229 799.3 540 75.0
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 2.4e-229 798.9 540 75.9
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 3.5e-228 795.0 528 75.4
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 4.5e-228 794.7 532 75.4
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 4.5e-228 794.7 525 76.8
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 5.9e-228 794.3 522 76.4
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 1.3e-227 793.1 533 75.8
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 2.3e-227 792.3 536 75.6
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 8.6e-227 790.4 532 75.4
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 1.5e-226 789.6 536 75.2
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 2.5e-226 788.9 529 76.9
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 7.3e-226 787.3 534 76.0
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 8.0e-225 783.9 527 75.3
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 1.0e-224 783.5 538 73.2
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 2.2e-222 775.8 534 75.5
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 2.9e-222 775.4 574 70.4
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 3.7e-222 775.0 523 74.4
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 8.3e-222 773.9 531 73.6
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 1.1e-221 773.5 532 74.1
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 1.1e-221 773.5 531 73.6
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 1.9e-221 772.7 526 74.5
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 3.2e-221 771.9 529 73.9
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 2.0e-220 769.2 524 76.1
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 2.0e-220 769.2 523 74.4
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 3.5e-220 768.5 533 71.9
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 3.0e-219 765.4 525 73.9
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 3.0e-219 765.4 535 73.8
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 3.0e-219 765.4 556 71.8
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 1.6e-217 759.6 527 73.2
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 2.1e-217 759.2 490 78.2
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 2.0e-215 752.7 532 71.1
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 4.4e-215 751.5 489 76.7
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 9.8e-215 750.4 527 71.3
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 2.2e-214 749.2 523 73.2
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 8.3e-214 747.3 524 72.5
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.4e-213 746.5 524 71.2
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 7.0e-213 744.2 530 70.8
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 9.2e-213 743.8 528 71.4
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 2.7e-212 742.3 532 71.1
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 3.5e-212 741.9 529 71.3
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 6.0e-212 741.1 528 71.0
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 1.0e-211 740.3 531 71.0
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 1.3e-211 740.0 529 71.5
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 3.9e-211 738.4 528 70.5
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 3.9e-211 738.4 528 70.5
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 2.5e-210 735.7 528 71.0
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 4.7e-209 731.5 521 70.8
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 6.8e-208 727.6 525 70.1
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 1.5e-207 726.5 560 66.4
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 4.4e-207 724.9 514 70.8
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 5.8e-207 724.5 525 70.5
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 1.3e-206 723.4 476 76.7
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 2.2e-206 722.6 524 69.5
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 2.4e-205 719.2 527 70.6
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 2.1e-204 716.1 515 71.3
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.3e-203 713.4 488 75.8
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 6.6e-203 711.1 550 67.5
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 1.2e-201 706.8 491 73.3
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 1.2e-199 700.3 540 66.7
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 1.4e-197 693.3 533 68.1
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 3.2e-197 692.2 595 64.5
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 1.8e-192 676.4 410 83.2
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 6.0e-188 661.4 530 64.9
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 6.9e-184 647.9 553 63.7
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 4.0e-176 622.1 496 66.9
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 8.4e-174 614.4 407 76.2
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 3.7e-169 599.0 408 73.3
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 6.7e-139 498.4 539 52.3
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 8.0e-132 474.9 530 51.3
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 5.7e-130 468.8 354 70.1
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 3.0e-115 419.9 522 45.6
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 5.2e-115 419.1 537 45.1
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 8.9e-115 418.3 277 74.4
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 7.5e-114 415.2 291 71.8
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 3.7e-113 412.9 294 72.4
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 3.7e-113 412.9 562 42.0
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 2.0e-106 390.6 562 41.8
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 1.3e-105 387.9 264 73.9
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 7.8e-103 378.6 322 61.5
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 2.1e-100 370.5 555 39.1
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 2.9e-89 333.6 426 45.3
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.5e-82 311.2 311 56.3
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 2.8e-76 290.4 181 77.9
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 6.9e-75 285.8 619 33.9
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 1.3e-65 255.0 219 63.0
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 4.2e-64 250.0 265 53.2
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.0e-54 218.8 162 71.0
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 4.3e-53 213.4 705 28.4
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 4.8e-52 209.9 152 69.1
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 6.5e-49 199.5 99 94.9
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 3.9e-46 190.3 174 57.5
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.1e-40 172.2 114 76.3
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 9.4e-40 169.1 122 66.4
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 6.7e-38 162.9 126 66.7
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.3e-30 137.9 97 70.1
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 4.5e-26 123.6 179 39.7
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 2.2e-25 121.3 83 73.5
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 9.1e-19 99.4 89 59.6
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.2e-17 94.7 58 74.1
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 1.9e-16 91.7 51 90.2
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 7.7e-10 69.7 110 36.4
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 5.5e-08 63.5 52 69.2
Medtr3g062620 Medicago truncatula HOM05D005743 ORTHO05D007031 4.0e-06 57.4 40 75.0


User provided reference genes

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