Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 1.7e-180 636.0 344 100.0
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 2.2e-50 203.8 153 70.6
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 1.0e-47 194.9 156 68.6
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 1.3e-47 194.5 154 69.5
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 5.1e-47 192.6 154 72.7
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 6.6e-47 192.2 149 69.1
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 2.3e-44 183.7 155 67.7
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 8.9e-44 181.8 156 67.3
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 8.9e-44 181.8 153 67.3
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 4.4e-43 179.5 155 65.2
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 9.9e-43 178.3 155 65.2
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.9e-42 176.8 154 61.7
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 4.1e-41 172.9 155 63.2
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.2e-40 171.4 155 63.2
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 4.6e-40 169.5 155 60.0
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 3.9e-39 166.4 156 59.0
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 7.3e-38 162.2 154 65.6
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 7.3e-38 162.2 153 60.8
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 9.6e-38 161.8 151 59.6
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 1.2e-37 161.4 157 57.3
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 1.2e-37 161.4 162 56.8
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 1.6e-37 161.0 156 60.9
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 2.8e-37 160.2 158 59.5
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 4.7e-37 159.5 156 60.3
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 8.1e-37 158.7 154 59.1
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 1.1e-36 158.3 153 58.2
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.1e-36 158.3 152 59.2
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 1.8e-36 157.5 152 59.2
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.8e-36 157.5 152 59.2
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.8e-36 157.5 151 57.6
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 2.4e-36 157.1 155 58.1
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 2.6e-35 153.7 158 54.4
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 3.4e-35 153.3 155 56.8
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 4.4e-35 152.9 157 55.4
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 9.9e-35 151.8 157 54.1
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 9.9e-35 151.8 154 55.2
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 2.2e-34 150.6 156 55.1
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 3.8e-34 149.8 151 52.3
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 4.9e-34 149.4 155 53.5
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 4.2e-33 146.4 154 56.5
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 2.1e-32 144.1 155 54.8
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 2.1e-32 144.1 150 56.0
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 2.7e-32 143.7 145 56.6
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 2.7e-32 143.7 165 52.1
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 7.8e-32 142.1 152 54.6
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 7.8e-32 142.1 150 55.3
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 1.3e-31 141.4 158 62.7
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.7e-31 141.0 153 52.3
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.7e-31 141.0 153 52.3
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 3.9e-31 139.8 158 51.3
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 5.1e-31 139.4 157 54.8
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.5e-30 137.9 155 51.0
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 7.3e-30 135.6 154 46.8
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 9.6e-30 135.2 155 52.9
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 1.3e-29 134.8 149 51.0
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 1.3e-29 134.8 149 51.0
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 2.8e-29 133.7 199 45.7
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 6.2e-29 132.5 156 47.4
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 1.1e-28 131.7 155 49.7
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 4.0e-28 129.8 152 50.0
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.0e-28 129.8 150 52.0
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 5.3e-28 129.4 153 49.0
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.3e-28 129.4 158 48.7
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.9e-28 129.0 154 50.0
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 1.5e-27 127.9 155 52.9
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.0e-27 127.5 158 50.0
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.6e-27 127.1 150 50.7
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 7.6e-27 125.6 155 45.2
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 2.2e-26 124.0 158 48.7
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 2.9e-26 123.6 154 48.1
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 1.9e-25 120.9 155 49.0
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 5.4e-25 119.4 155 49.0
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 7.1e-25 119.0 155 45.8
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 2.7e-24 117.1 157 45.9
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 3.5e-24 116.7 158 46.8
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 3.5e-24 116.7 128 48.4
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 1.0e-23 115.2 153 45.1
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 1.7e-23 114.4 127 52.0
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 4.3e-22 109.8 182 39.6
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 5.6e-22 109.4 151 47.0
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 5.6e-22 109.4 162 40.7
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 9.6e-22 108.6 154 46.1
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 1.3e-21 108.2 179 40.2
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 2.8e-21 107.1 152 42.1
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 4.8e-21 106.3 132 50.8
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 4.8e-21 106.3 144 43.8
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 1.4e-20 104.8 159 42.1
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 3.1e-20 103.6 139 43.2
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 6.9e-20 102.4 165 43.0
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.9e-20 102.4 123 45.5
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 6.9e-20 102.4 155 43.9
RcHm_v2.0_Chr4g0422901 Rosa chinensis HOM05D003565 ORTHO05D003943 9.0e-20 102.1 159 43.4
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.3e-18 98.2 126 43.7
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.2e-18 97.4 155 42.6
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.9e-18 97.1 153 40.5
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 3.8e-18 96.7 126 43.7
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 3.8e-18 96.7 154 42.2
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 4.9e-18 96.3 154 42.2
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 6.4e-18 95.9 104 57.7
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 6.4e-18 95.9 154 42.2
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 8.4e-18 95.5 159 39.0
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 8.4e-18 95.5 154 39.0
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 8.4e-18 95.5 126 45.2
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 1.1e-17 95.1 144 41.7
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 1.9e-17 94.4 154 41.6
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 3.2e-17 93.6 154 40.3
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 3.2e-17 93.6 120 56.7
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 4.2e-17 93.2 155 41.3
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 5.5e-17 92.8 153 41.8
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 5.5e-17 92.8 154 40.9
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 7.1e-17 92.4 161 40.4
C01p47670 Brassica napus HOM05D003565 ORTHO05D003943 9.3e-17 92.0 165 46.7
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 9.3e-17 92.0 154 40.3
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 9.3e-17 92.0 154 40.3
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 1.6e-16 91.3 126 42.1
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 1.6e-16 91.3 158 39.9
AL3G29590 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 2.1e-16 90.9 153 40.5
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 2.1e-16 90.9 150 39.3
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 2.7e-16 90.5 178 44.4
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 2.7e-16 90.5 149 42.3
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 4.6e-16 89.7 154 39.6
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 6.0e-16 89.4 154 39.0
BolC1t04739H Brassica oleracea HOM05D003565 ORTHO05D003943 7.9e-16 89.0 120 53.3
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 7.9e-16 89.0 154 40.3
A01p37640 Brassica napus HOM05D003565 ORTHO05D003943 1.3e-15 88.2 120 52.5
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.8e-15 87.8 152 42.1
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 3.0e-15 87.0 149 40.9
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 3.0e-15 87.0 154 41.6
BraA01t03825Z Brassica rapa HOM05D003565 ORTHO05D003943 3.9e-15 86.7 195 41.5
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 3.9e-15 86.7 106 46.2
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.5e-14 84.7 152 41.4
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 2.5e-14 84.0 105 45.7
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 1.3e-13 81.6 168 38.7
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 1.6e-13 81.3 163 36.2
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 2.8e-13 80.5 163 36.2
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 2.8e-13 80.5 152 36.8
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 4.8e-13 79.7 157 36.3
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 6.2e-13 79.3 148 40.5
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 6.2e-13 79.3 150 40.0
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 8.1e-13 79.0 148 40.5
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.4e-12 78.2 146 38.4
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 9.0e-12 75.5 150 40.0
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.0e-11 74.3 99 45.5
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 3.4e-11 73.6 148 35.1
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 1.0e-10 72.0 155 34.8
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 1.3e-10 71.6 155 34.8
CsaV3_3G014760 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.3e-10 71.6 108 38.0
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 1.3e-10 71.6 146 34.2
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 2.2e-10 70.9 159 34.6
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 3.8e-10 70.1 152 32.9
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 3.8e-10 70.1 158 34.2
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 1.9e-09 67.8 119 37.8
QL06p009759 Quercus lobata HOM05D003565 ORTHO05D003943 1.9e-09 67.8 91 49.5
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 4.2e-09 66.6 153 34.6
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 7.1e-09 65.9 157 35.7
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 7.1e-09 65.9 159 34.0
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 2.7e-08 63.9 169 30.2
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 4.6e-08 63.2 145 34.5
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 1.0e-07 62.0 169 30.2
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 5.1e-07 59.7 136 33.1
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 6.7e-07 59.3 155 27.7
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 8.7e-07 58.9 96 41.7
Hma1.2p1_0078F.1_g040470 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 8.7e-07 58.9 154 34.4
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.5e-06 57.4 104 34.6
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 2.5e-06 57.4 149 35.6
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 9.6e-06 55.5 136 35.3
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 9.6e-06 55.5 136 37.5
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 9.6e-06 55.5 134 35.8


User provided reference genes

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