Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 2781.5 1359 100.0
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1805.8 1425 64.1
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 1674.1 1456 59.5
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 1650.6 1407 61.0
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 0.0e+00 1647.5 1407 59.6
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1631.7 1410 60.2
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1619.4 1410 60.1
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1618.6 1409 59.5
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 1613.2 1464 58.5
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 1594.3 1416 58.5
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 0.0e+00 1585.1 1383 60.7
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1581.2 1411 58.2
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1580.1 1399 57.4
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1577.8 1402 58.7
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 1570.1 1399 58.1
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1570.1 1406 59.2
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1562.0 1395 58.9
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1547.7 1397 56.7
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1537.3 1400 57.8
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1531.2 1398 58.5
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1528.1 1393 57.4
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1522.3 1398 57.0
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1515.0 1492 55.6
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1503.4 1395 56.6
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 1501.5 1403 56.4
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1501.5 1393 56.9
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1493.4 1362 57.0
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 1491.9 1392 55.5
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1488.4 1392 56.1
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 1474.5 1394 54.8
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 1468.0 1396 54.6
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1462.2 1389 54.6
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 1460.7 1400 54.5
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 1459.5 1407 54.9
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 1447.6 1397 54.3
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 1445.3 1453 52.4
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 0.0e+00 1439.5 1388 56.1
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1436.4 1391 54.1
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1434.5 1391 54.1
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 1422.5 1407 53.2
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 0.0e+00 1417.5 1393 55.1
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1414.4 1408 53.3
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 0.0e+00 1406.0 1407 52.7
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 0.0e+00 1389.4 1419 52.4
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 0.0e+00 1389.0 1397 53.8
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 0.0e+00 1388.6 1373 53.5
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 0.0e+00 1381.7 1166 59.1
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 0.0e+00 1380.9 1427 51.0
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 0.0e+00 1376.7 1389 51.7
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1375.9 1158 59.9
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1370.1 1384 52.4
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 0.0e+00 1368.2 1393 51.5
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 0.0e+00 1367.4 1392 50.9
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 0.0e+00 1363.2 1387 51.8
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 0.0e+00 1352.8 1405 51.7
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 0.0e+00 1352.4 1392 50.6
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1350.9 1388 51.4
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 0.0e+00 1350.9 1386 51.5
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 0.0e+00 1349.0 1394 50.7
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 0.0e+00 1347.4 1475 50.3
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1342.4 1424 49.8
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1337.8 1384 51.4
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 0.0e+00 1337.8 1393 50.3
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1336.6 1466 50.5
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1336.2 1382 51.0
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 0.0e+00 1333.5 1389 53.3
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 0.0e+00 1332.8 1381 50.5
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 0.0e+00 1330.1 1384 50.9
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 1320.1 1410 50.4
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 0.0e+00 1318.1 1400 50.6
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 0.0e+00 1304.7 1409 51.0
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 0.0e+00 1293.1 1350 51.9
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 0.0e+00 1291.2 1363 50.7
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 0.0e+00 1281.2 1412 50.1
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 0.0e+00 1265.0 1171 56.8
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 0.0e+00 1261.9 1389 50.3
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 0.0e+00 1229.5 1365 50.1
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 0.0e+00 1228.0 955 63.5
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 0.0e+00 1215.3 1399 48.5
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1211.8 1065 59.2
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1205.7 1065 59.0
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 0.0e+00 1196.8 1410 47.7
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 0.0e+00 1173.3 1403 46.8
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1169.5 978 59.5
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1140.6 1087 55.4
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 2.8e-306 1055.8 1044 52.1
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 5.1e-284 981.9 950 54.9
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 3.1e-265 919.5 1371 40.9
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 3.7e-258 896.0 879 54.7
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 5.0e-223 779.2 697 57.7
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 4.2e-222 776.2 1486 36.6
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 5.5e-222 775.8 1515 33.9
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 2.5e-214 750.4 607 61.8
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 2.3e-212 743.8 1505 34.0
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 9.1e-209 731.9 1322 37.0
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 3.7e-202 709.9 852 47.1
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 8.3e-194 682.2 786 49.2
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 1.9e-193 681.0 599 59.3
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 1.9e-193 681.0 602 56.8
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 8.0e-189 665.6 589 58.2
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 6.0e-168 596.3 806 43.7
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 1.7e-167 594.7 658 49.1
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.8e-165 587.4 783 42.5
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 1.5e-155 555.1 1333 31.9
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.4e-153 548.5 888 40.3
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 9.3e-145 519.2 594 49.2
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 2.2e-138 498.0 387 66.4
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 2.7e-99 368.2 317 60.3
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-91 341.7 361 51.2
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.4e-79 302.8 329 48.3
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 7.5e-78 297.0 466 42.5
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 2.2e-77 295.4 271 60.9
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 6.6e-74 283.9 337 48.7
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 3.2e-68 265.0 261 57.5
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.9e-66 258.1 299 48.2
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 4.7e-64 251.1 367 41.7
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 1.4e-63 249.6 258 55.4
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 3.9e-58 231.5 204 55.9
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 5.1e-58 231.1 1650 22.5
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 1.1e-55 223.4 184 59.8
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 1.3e-53 216.5 184 58.7
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 5.1e-50 204.5 202 50.0
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 3.1e-47 195.3 1125 23.7
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 9.0e-47 193.7 214 45.8
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 1.4e-44 186.4 175 55.4
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 2.9e-37 162.2 99 72.7
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 6.4e-37 161.0 618 25.9
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 8.7e-34 150.6 160 45.6
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 7.4e-33 147.5 161 44.1
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 5.8e-30 137.9 157 48.4
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 5.5e-28 131.3 109 58.7
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 1.6e-27 129.8 76 71.1
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 1.3e-26 126.7 103 56.3
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 3.9e-26 125.2 87 65.5
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 1.1e-25 123.6 253 32.4
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 1.9e-25 122.9 118 45.8
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 1.5e-22 113.2 110 49.1
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 1.4e-20 106.7 189 36.5
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 1.1e-17 97.1 86 55.8
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.8e-16 91.7 63 71.4
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.8e-16 91.7 63 71.4
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 1.4e-15 90.1 131 38.2
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 6.9e-15 87.8 63 69.8
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.5e-14 85.1 103 50.5
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.1e-12 80.5 49 75.5
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 3.2e-12 79.0 87 48.3
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.2e-12 78.6 56 73.2
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 5.5e-12 78.2 74 55.4
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 9.4e-12 77.4 53 67.9
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 8.8e-10 70.9 54 51.9
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 5.7e-09 68.2 43 72.1
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 7.4e-09 67.8 53 62.3
Cre04.g217991 Chlamydomonas reinhardtii HOM05D004810 ORTHO05D006272 8.2e-08 64.3 177 28.8
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 1.2e-06 60.5 179 25.7
THA.LOC104798895 Tarenaya hassleriana HOM05D002332 ORTHO05D002509 1.2e-06 60.5 223 24.7
Haze_18089 Corylus avellana HOM05D002634 ORTHO05D003100 3.4e-06 58.9 106 33.0
Dinv39256 Davidia involucrata HOM05D002634 ORTHO05D003100 3.4e-06 58.9 106 34.0
CSS0010477 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 4.5e-06 58.5 106 32.1
CSS0042779 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 4.5e-06 58.5 106 32.1
Cfa018035 Carpinus fangiana HOM05D002634 ORTHO05D003100 4.5e-06 58.5 106 33.0


User provided reference genes

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