Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 7.9e-237 823.5 464 100.0
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 2.5e-198 695.7 443 83.1
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 2.7e-168 595.9 449 70.6
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 6.2e-165 584.7 450 69.3
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 6.2e-165 584.7 443 68.2
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 2.6e-163 579.3 444 70.3
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 5.8e-163 578.2 461 72.7
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 1.3e-162 577.0 452 68.4
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 6.4e-162 574.7 443 67.0
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 7.1e-161 571.2 443 67.7
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 3.5e-160 568.9 431 74.0
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 3.5e-160 568.9 443 67.3
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 3.5e-160 568.9 443 67.3
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 1.0e-159 567.4 446 68.2
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.0e-159 567.4 443 66.8
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 3.0e-159 565.8 445 66.5
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 5.6e-158 561.6 443 65.7
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 3.1e-156 555.8 443 64.8
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.0e-156 555.4 449 67.3
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 8.9e-156 554.3 452 64.6
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.5e-155 553.5 419 69.9
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 1.9e-153 546.6 419 68.7
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 1.9e-153 546.6 443 69.1
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 2.4e-153 546.2 443 64.6
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 3.2e-153 545.8 448 64.5
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 5.4e-153 545.0 451 65.0
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.1e-152 543.1 451 65.0
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 4.6e-152 542.0 443 63.4
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.0e-151 540.8 443 63.4
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 1.3e-151 540.4 443 63.2
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 4.3e-150 535.4 452 63.1
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 7.3e-150 534.6 450 64.7
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 9.6e-150 534.3 446 61.7
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 4.7e-149 531.9 447 62.0
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 8.1e-149 531.2 444 63.7
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 4.0e-148 528.9 455 66.2
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 2.6e-147 526.2 445 63.4
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 2.6e-147 526.2 455 65.5
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 9.9e-147 524.2 453 68.0
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 1.7e-146 523.5 451 65.4
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 3.8e-146 522.3 443 61.6
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 6.4e-146 521.5 475 65.5
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 2.4e-145 519.6 453 61.6
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 4.6e-144 515.4 447 64.0
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 6.0e-144 515.0 453 61.6
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 7.8e-144 514.6 455 60.9
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.7e-143 513.5 450 59.3
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.0e-143 512.7 450 59.1
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.6e-143 511.5 450 59.3
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.5e-142 510.4 451 61.9
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 3.3e-142 509.2 443 59.6
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.3e-142 508.8 453 67.1
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 5.6e-142 508.4 467 62.1
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 2.1e-141 506.5 443 58.2
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 2.8e-141 506.1 443 61.6
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 4.8e-141 505.4 451 66.5
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 1.4e-140 503.8 450 59.6
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 3.1e-140 502.7 432 63.9
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 6.9e-140 501.5 453 58.9
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 6.9e-140 501.5 445 60.2
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 3.4e-139 499.2 375 68.0
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 4.4e-139 498.8 447 59.7
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 5.8e-139 498.4 460 59.3
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 2.2e-138 496.5 454 59.0
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 2.2e-138 496.5 449 63.0
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.4e-138 494.6 449 58.8
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.9e-137 493.4 473 56.0
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 9.3e-137 491.1 446 61.2
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 1.6e-136 490.3 419 62.3
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 2.7e-136 489.6 450 57.1
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 4.6e-136 488.8 447 58.2
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 1.3e-135 487.3 450 62.4
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 1.3e-135 487.3 449 57.9
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 1.7e-135 486.9 449 57.2
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 3.9e-135 485.7 449 56.1
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 1.1e-134 484.2 398 62.8
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 1.5e-134 483.8 443 60.3
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 3.3e-134 482.6 452 58.4
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.6e-134 481.1 480 55.2
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 2.8e-133 479.6 443 57.3
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 2.8e-133 479.6 416 64.4
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.8e-132 476.9 452 58.0
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 2.4e-132 476.5 452 57.1
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.5e-131 473.8 445 56.0
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 4.5e-131 472.2 451 57.9
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 5.8e-131 471.9 454 63.0
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 7.6e-131 471.5 443 59.8
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 9.9e-131 471.1 443 56.7
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 1.9e-129 466.8 449 59.5
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 5.5e-129 465.3 450 59.6
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 5.5e-129 465.3 550 49.3
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 5.5e-129 465.3 447 56.2
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 4.6e-128 462.2 443 57.6
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 2.3e-127 459.9 443 55.3
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 3.0e-127 459.5 443 58.0
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 9.6e-126 454.5 464 55.8
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 2.1e-125 453.4 443 55.1
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 8.1e-125 451.4 427 57.6
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 1.4e-124 450.7 449 57.9
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 4.0e-124 449.1 483 51.8
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 6.9e-124 448.4 443 57.3
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 2.6e-123 446.4 453 53.9
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 2.6e-123 446.4 444 56.3
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 3.4e-123 446.0 500 52.8
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 4.5e-123 445.7 441 56.7
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 1.7e-122 443.7 446 55.8
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 2.9e-122 443.0 361 62.9
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 4.9e-122 442.2 457 53.4
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 7.1e-121 438.3 423 59.6
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 2.7e-120 436.4 388 63.4
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 6.0e-120 435.3 443 54.9
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 7.9e-120 434.9 443 54.6
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 5.1e-119 432.2 445 51.5
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 1.5e-118 430.6 441 57.8
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 4.3e-118 429.1 445 54.4
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.3e-117 427.6 347 64.0
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 1.4e-113 414.1 440 56.6
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.9e-113 413.7 424 56.4
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 5.5e-113 412.1 446 51.6
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 5.5e-113 412.1 457 51.0
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 1.6e-112 410.6 395 63.8
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 4.6e-112 409.1 443 53.5
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 3.0e-111 406.4 383 54.6
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.5e-110 403.3 497 48.5
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.3e-110 402.9 497 48.5
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 9.7e-110 401.4 450 50.9
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 1.1e-108 397.9 443 51.2
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 2.0e-107 393.7 425 56.7
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.0e-106 391.3 407 58.0
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 7.4e-102 375.2 400 53.5
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 5.3e-100 369.0 407 55.3
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 1.2e-99 367.9 349 58.5
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 2.9e-98 363.2 443 48.1
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 3.3e-94 349.7 443 52.4
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 4.4e-94 349.4 482 45.4
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.3e-90 337.8 452 46.7
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 9.7e-86 321.6 375 49.6
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 8.5e-82 308.5 416 44.5
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 1.7e-77 294.3 270 54.8
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 4.5e-75 286.2 172 79.1
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.1e-73 281.6 265 52.8
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 2.5e-73 280.4 407 38.8
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 2.5e-73 280.4 172 77.3
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 6.1e-72 275.8 266 50.4
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.7e-69 267.7 266 49.6
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 3.8e-66 256.5 185 63.8
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 1.3e-50 204.9 239 53.6
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 6.6e-50 202.6 318 42.5
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 1.6e-48 198.0 138 66.7
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 2.2e-45 187.6 271 43.5
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 6.4e-37 159.5 247 36.0
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 3.5e-35 153.7 91 80.2
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 9.6e-33 145.6 112 67.9
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 4.7e-32 143.3 230 48.3
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 2.0e-30 137.9 196 35.2
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 6.0e-27 126.3 145 41.4
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 7.8e-27 125.9 122 59.0
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 3.3e-25 120.6 114 62.3
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 4.8e-24 116.7 80 67.5
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.4e-15 88.6 93 50.5
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.2e-13 81.3 46 80.4
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 6.0e-11 73.2 195 25.6
FvH4_4g16331 Fragaria vesca HOM05D004208 ORTHO05D197324 3.7e-08 63.9 72 50.0
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 3.7e-08 63.9 65 49.2
FvH4_3g18772 Fragaria vesca HOM05D004208 ORTHO05D198159 1.4e-07 62.0 53 62.3
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 2.4e-07 61.2 109 33.0
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 6.9e-07 59.7 32 75.0


User provided reference genes

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