Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0130 Trochodendron aralioides HOM05D005340 ORTHO05D006693 4.2e-281 970.7 491 100.0
TAR371G0529 Trochodendron aralioides HOM05D005340 ORTHO05D006693 4.7e-163 578.6 315 95.6
CiPaw.06G148800 Carya illinoinensis HOM05D005340 ORTHO05D006693 2.5e-132 476.5 480 57.5
GSVIVG01031043001 Vitis vinifera HOM05D005340 ORTHO05D006693 6.2e-131 471.9 473 57.3
Nn8g41264 Nelumbo nucifera HOM05D005340 ORTHO05D006693 2.6e-129 466.5 462 58.4
QL02p098613 Quercus lobata HOM05D005340 ORTHO05D006693 2.7e-126 456.4 486 55.1
CiPaw.05G042900 Carya illinoinensis HOM05D005340 ORTHO05D006693 3.5e-126 456.1 480 55.4
Dinv34831 Davidia involucrata HOM05D005340 ORTHO05D006693 1.7e-125 453.8 318 72.6
CSS0006515 Camellia sinensis var. sinensis HOM05D005340 ORTHO05D006693 8.6e-125 451.4 480 54.0
Rhsim08G0081700 Rhododendron simsii HOM05D005340 ORTHO05D006693 1.6e-123 447.2 484 54.3
Aqoxy5G01062 Aquilegia oxysepala HOM05D005340 ORTHO05D006693 2.1e-123 446.8 476 54.4
Actinidia17633 Actinidia chinensis HOM05D005340 ORTHO05D006693 6.2e-123 445.3 478 54.2
MD15G1418600 Malus domestica HOM05D005340 ORTHO05D006693 1.8e-122 443.7 471 54.4
FvH4_5g30090 Fragaria vesca HOM05D005340 ORTHO05D006693 4.4e-121 439.1 466 53.0
FAN04G0654 Fragaria x ananassa HOM05D005340 ORTHO05D006693 3.7e-120 436.0 466 53.2
Lj2A443T58 Lonicera japonica HOM05D005340 ORTHO05D006693 3.7e-120 436.0 472 53.8
Cfa015491 Carpinus fangiana HOM05D005340 ORTHO05D006693 4.9e-120 435.6 477 53.5
FAN13G0075 Fragaria x ananassa HOM05D005340 ORTHO05D006693 1.4e-119 434.1 466 52.6
PSO541G3461 Papaver somniferum HOM05D005340 ORTHO05D006693 2.4e-119 433.3 319 72.7
Prupe.1G562700 Prunus persica HOM05D005340 ORTHO05D006693 2.4e-119 433.3 466 53.0
Haze_01628 Corylus avellana HOM05D005340 ORTHO05D006693 3.2e-119 433.0 477 53.2
PSO675G0345 Papaver somniferum HOM05D005340 ORTHO05D006693 5.4e-119 432.2 319 72.4
Atru.chr1.1714 Acer truncatum HOM05D005340 ORTHO05D006693 6.0e-118 428.7 479 53.7
TWI74G0404 Tripterygium wilfordii HOM05D005340 ORTHO05D006693 8.6e-117 424.9 480 52.1
Manes.01G109700 Manihot esculenta HOM05D005340 ORTHO05D006693 1.1e-116 424.5 484 51.7
AUR62023320 Chenopodium quinoa HOM05D005340 ORTHO05D006693 3.3e-116 422.9 491 51.9
AUR62008983 Chenopodium quinoa HOM05D005340 ORTHO05D006693 7.3e-116 421.8 493 51.7
TWI77G0603 Tripterygium wilfordii HOM05D005340 ORTHO05D006693 8.1e-115 418.3 480 51.7
Ciclev10011466m.g Citrus clementina HOM05D005340 ORTHO05D006693 1.4e-114 417.5 501 49.9
Lj2g0006310 Lotus japonicus HOM05D005340 ORTHO05D006693 2.4e-114 416.8 484 51.4
C04p45110 Brassica napus HOM05D005340 ORTHO05D006693 8.9e-114 414.8 457 52.5
BolC4t26090H Brassica oleracea HOM05D005340 ORTHO05D006693 8.9e-114 414.8 457 52.5
CANSAT54G1996 Cannabis sativa HOM05D005340 ORTHO05D006693 2.0e-113 413.7 318 67.0
FAN08G3454 Fragaria x ananassa HOM05D005340 ORTHO05D006693 3.4e-113 412.9 530 47.0
Glyma.13G046500 Glycine max HOM05D005340 ORTHO05D006693 4.4e-113 412.5 477 52.8
AL7G52120 Arabidopsis lyrata HOM05D005340 ORTHO05D006693 7.6e-113 411.8 466 51.3
BcaC02g09648 Brassica carinata HOM05D005340 ORTHO05D006693 9.9e-113 411.4 457 52.3
A04p11420 Brassica napus HOM05D005340 ORTHO05D006693 9.9e-113 411.4 456 52.0
BraA04t16805Z Brassica rapa HOM05D005340 ORTHO05D006693 1.7e-112 410.6 456 51.8
DCAR_025917 Daucus carota HOM05D005340 ORTHO05D006693 2.9e-112 409.8 317 66.6
Aa31LG9G17070 Aethionema arabicum HOM05D005340 ORTHO05D006693 3.8e-112 409.5 464 51.3
RcHm_v2.0_Chr7g0224281 Rosa chinensis HOM05D005340 ORTHO05D006693 3.8e-112 409.5 357 60.8
Carub.0007s3744 Capsella rubella HOM05D005340 ORTHO05D006693 6.4e-112 408.7 467 51.4
AT5G38460 Arabidopsis thaliana HOM05D005340 ORTHO05D006693 8.4e-112 408.3 467 51.0
EL10Ac2g04584 Beta vulgaris HOM05D005340 ORTHO05D006693 8.4e-112 408.3 343 63.8
Oeu030776.1 Olea europaea HOM05D005340 ORTHO05D006693 9.3e-111 404.8 473 51.2
Sp7g03590 Schrenkiella parvula HOM05D005340 ORTHO05D006693 9.3e-111 404.8 471 50.1
CARHR291850 Cardamine hirsuta HOM05D005340 ORTHO05D006693 1.2e-110 404.4 465 51.0
Potri.004G100500 Populus trichocarpa HOM05D005340 ORTHO05D006693 4.6e-110 402.5 320 64.7
Duzib151G0269 Durio zibethinus HOM05D005340 ORTHO05D006693 1.0e-109 401.4 499 50.3
Hund16143 Selenicereus undatus HOM05D005340 ORTHO05D006693 1.0e-109 401.4 343 62.1
Cc07_g08850 Coffea canephora HOM05D005340 ORTHO05D006693 1.3e-109 401.0 466 52.1
Sc10g0001220 Simmondsia chinensis HOM05D005340 ORTHO05D006693 1.3e-109 401.0 478 50.2
Phvul.002G243400 Phaseolus vulgaris HOM05D005340 ORTHO05D006693 1.7e-109 400.6 462 50.6
COL.COLO4_05461 Corchorus olitorius HOM05D005340 ORTHO05D006693 2.3e-109 400.2 492 50.2
Thhalv10027717m.g Eutrema salsugineum HOM05D005340 ORTHO05D006693 2.3e-109 400.2 478 49.2
Thecc.04G135300 Theobroma cacao HOM05D005340 ORTHO05D006693 3.9e-109 399.4 485 50.9
VMungo1127G2281 Vigna mungo HOM05D005340 ORTHO05D006693 8.7e-109 398.3 476 49.4
PSO782G4549 Papaver somniferum HOM05D005340 ORTHO05D006693 1.5e-108 397.5 472 52.1
BcaB06g27224 Brassica carinata HOM05D005340 ORTHO05D006693 1.9e-108 397.1 465 50.8
Eucgr.F02485 Eucalyptus grandis HOM05D005340 ORTHO05D006693 1.3e-107 394.4 318 64.8
Gohir.D09G205800 Gossypium hirsutum HOM05D005340 ORTHO05D006693 1.3e-107 394.4 486 49.4
Ah.16g101850 Amaranthus hybridus HOM05D005340 ORTHO05D006693 2.1e-107 393.7 317 66.6
arahy.Tifrunner.gnm1.ann1.HD0QD7 Arachis hypogaea HOM05D005340 ORTHO05D006693 2.1e-107 393.7 322 64.9
Gorai.006G229700 Gossypium raimondii HOM05D005340 ORTHO05D006693 2.1e-107 393.7 486 49.4
Gohir.A09G212300 Gossypium hirsutum HOM05D005340 ORTHO05D006693 2.8e-107 393.3 482 50.0
Potri.017G114100 Populus trichocarpa HOM05D005340 ORTHO05D006693 4.8e-107 392.5 320 64.7
PGR142G3832 Punica granatum HOM05D005340 ORTHO05D006693 8.1e-107 391.7 317 64.4
arahy.Tifrunner.gnm1.ann1.2X25WT Arachis hypogaea HOM05D005340 ORTHO05D006693 1.4e-106 391.0 322 64.0
HanXRQChr11g0325001 Helianthus annuus HOM05D005340 ORTHO05D006693 1.4e-106 391.0 485 48.9
Phvul.004G064500 Phaseolus vulgaris HOM05D005340 ORTHO05D006693 3.1e-106 389.8 463 49.9
Sopen02g030540 Solanum pennellii HOM05D005340 ORTHO05D006693 5.3e-106 389.0 477 49.3
PGSC0003DMG400012671 Solanum tuberosum HOM05D005340 ORTHO05D006693 5.3e-106 389.0 477 49.3
Psat1g075120 Pisum sativum HOM05D005340 ORTHO05D006693 9.0e-106 388.3 319 64.6
Migut.H00210 Erythranthe guttata HOM05D005340 ORTHO05D006693 1.5e-105 387.5 318 62.6
THA.LOC104823863 Tarenaya hassleriana HOM05D005340 ORTHO05D006693 3.4e-105 386.3 479 48.2
Nitab4.5_0001569g0090 Nicotiana tabacum HOM05D005340 ORTHO05D006693 4.4e-105 386.0 477 50.1
Solyc02g085860.4 Solanum lycopersicum HOM05D005340 ORTHO05D006693 7.6e-105 385.2 321 62.6
SGA_v2.0_scaffold33G13479 Striga asiatica HOM05D005340 ORTHO05D006693 7.6e-105 385.2 315 64.1
CAN.G625.8 Capsicum annuum HOM05D005340 ORTHO05D006693 9.9e-105 384.8 476 48.7
vmacro18081 Vaccinium macrocarpon HOM05D005340 ORTHO05D006693 9.9e-105 384.8 592 43.1
Lalb_Chr06g0174621 Lupinus albus HOM05D005340 ORTHO05D006693 3.8e-104 382.9 343 60.6
Nitab4.5_0005199g0080 Nicotiana tabacum HOM05D005340 ORTHO05D006693 4.9e-104 382.5 477 49.7
ATR0618G222 Amborella trichopoda HOM05D005340 ORTHO05D006693 1.9e-103 380.6 318 62.9
Sed0021828 Sechium edule HOM05D005340 ORTHO05D006693 5.4e-103 379.0 480 49.6
CsaV3_3G020610 Cucumis sativus L. HOM05D005340 ORTHO05D006693 1.6e-102 377.5 482 48.8
Os07g0164500 Oryza sativa ssp. japonica HOM05D005340 ORTHO05D006693 1.6e-102 377.5 323 61.0
ClCG05G011750 Citrullus lanatus HOM05D005340 ORTHO05D006693 4.6e-102 375.9 483 48.0
TPR.G32458 Trifolium pratense HOM05D005340 ORTHO05D006693 1.7e-101 374.0 356 57.0
Sabra04G0079500 Salix brachista HOM05D005340 ORTHO05D006693 2.3e-101 373.6 364 56.0
CDE11G0559 Ceratophyllum demersum HOM05D005340 ORTHO05D006693 1.8e-98 364.0 272 70.2
Zm00001eb015730 Zea mays HOM05D005340 ORTHO05D006693 2.4e-98 363.6 293 63.8
SHI22415 Sapria himalayana HOM05D005340 ORTHO05D006693 6.9e-98 362.1 317 61.2
SEGI_23556 Sequoiadendron giganteum HOM05D005340 ORTHO05D006693 5.4e-95 352.4 298 60.1
Lsat_1_v5_gn_4_153740 Lactuca sativa HOM05D005340 ORTHO05D006693 1.3e-93 347.8 473 46.3
Pp3c19_22340 Physcomitrium patens HOM05D005340 ORTHO05D006693 4.3e-92 342.8 319 58.0
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 5.8e-89 332.4 308 58.8
AagrBONN_evm.TU.Sc2ySwM_117.1419 Anthoceros agrestis HOM05D005340 ORTHO05D006693 1.8e-85 320.9 416 48.3
SMO196G0061 Selaginella moellendorffii HOM05D005340 ORTHO05D006693 5.7e-84 315.8 315 56.2
FAN18G2890 Fragaria x ananassa HOM05D001225 ORTHO05D006693 1.6e-83 314.3 402 47.5
Mapoly0037s0055 Marchantia polymorpha HOM05D005340 ORTHO05D006693 2.6e-81 307.0 323 53.3
Peaxi162Scf00814g00228 Petunia axillaris HOM05D005340 ORTHO05D006693 1.4e-79 301.2 242 64.5
SalBow3G0764 Salvia bowleyana HOM05D005340 ORTHO05D006693 1.4e-79 301.2 477 42.3
Medtr6g017315 Medicago truncatula HOM05D005340 ORTHO05D006693 5.3e-74 282.7 216 68.1
CBR_g31513 Chara braunii HOM05D005340 ORTHO05D006693 5.0e-72 276.2 273 56.4
unitig_21.g20962 Utricularia gibba HOM05D005340 ORTHO05D006693 8.8e-69 265.4 215 64.2
MELO3C023794.2 Cucumis melo HOM05D005340 ORTHO05D006693 7.4e-60 235.7 347 42.9
Thhalv10017711m.g Eutrema salsugineum HOM05D005340 ORTHO05D006693 1.1e-55 221.9 310 45.2
PRCOL_00002185 Prasinoderma coloniale HOM05D005340 ORTHO05D006693 9.4e-55 218.8 266 47.0
arahy.Tifrunner.gnm1.ann1.9UVD5Q Arachis hypogaea HOM05D005340 ORTHO05D006693 3.3e-52 210.3 229 52.4
arahy.Tifrunner.gnm1.ann1.MY1EZ0 Arachis hypogaea HOM05D005340 ORTHO05D006693 2.8e-51 207.2 218 54.1
MELO3C031783.2 Cucumis melo HOM05D005340 ORTHO05D006693 8.2e-51 205.7 212 54.2
MCO06G120 Micromonas commoda HOM05D005340 ORTHO05D006693 7.7e-49 199.1 281 45.6
Cre16.g690150 Chlamydomonas reinhardtii HOM05D005340 ORTHO05D006693 5.5e-47 193.0 338 40.5
Ca_13735_v3 Cicer arietinum L. HOM05D005340 ORTHO05D006693 5.2e-37 159.8 132 64.4
CSS0043838 Camellia sinensis var. sinensis HOM05D005340 ORTHO05D006693 2.0e-36 157.9 122 68.0
HPP92_001453 Vanilla planifolia HOM05D005340 ORTHO05D006693 9.5e-31 139.0 176 46.6
TAR622G0273 Trochodendron aralioides HOM05D005340 ORTHO05D006693 6.8e-29 132.9 130 60.8
Cfa024122 Carpinus fangiana HOM05D005340 ORTHO05D006693 9.8e-28 129.0 342 31.3
Cpa.g.c31532 Carica papaya HOM05D005340 ORTHO05D006693 1.7e-24 118.2 77 77.9
AUR62044249 Chenopodium quinoa HOM05D005340 ORTHO05D006693 2.3e-24 117.9 77 72.7
TAR622G1245 Trochodendron aralioides HOM05D005340 ORTHO05D006693 2.5e-23 114.4 105 60.0
Cpa.g.sc179.1 Carica papaya HOM05D005340 ORTHO05D006693 4.0e-21 107.1 214 40.2
arahy.Tifrunner.gnm1.ann1.LI5PMJ Arachis hypogaea HOM05D005340 ORTHO05D006693 2.2e-19 101.3 112 50.9
TAR622G0300 Trochodendron aralioides HOM05D005340 ORTHO05D006693 6.0e-17 93.2 74 62.2
ECA232G2508 Erigeron canadensis HOM05D005340 ORTHO05D006693 1.0e-16 92.4 240 35.0
MELO3C027204.2 Cucumis melo HOM05D005340 ORTHO05D006693 2.3e-16 91.3 231 32.9
arahy.Tifrunner.gnm1.ann1.9GA3KJ Arachis hypogaea HOM05D005340 ORTHO05D006693 6.2e-14 83.2 149 38.9
Haze_26463 Corylus avellana HOM05D005340 ORTHO05D006693 3.4e-12 77.4 348 27.3
Zm00001eb396150 Zea mays HOM05D005340 ORTHO05D006693 7.5e-12 76.3 85 49.4
Zm00001eb179060 Zea mays HOM05D005340 ORTHO05D006693 2.9e-11 74.3 58 63.8
Zm00001eb380070 Zea mays HOM05D000394 ORTHO05D000299 4.9e-11 73.6 85 49.4
A04p15390 Brassica napus HOM05D005340 ORTHO05D041080 1.1e-10 72.4 73 50.7
HPP92_001348 Vanilla planifolia HOM05D005340 ORTHO05D006693 1.1e-10 72.4 80 57.5
Zm00001eb286130 Zea mays HOM05D005340 ORTHO05D006693 3.2e-10 70.9 82 50.0
Sc02g0003240 Simmondsia chinensis HOM05D005587 ORTHO05D007287 2.1e-09 68.2 265 26.4
Zm00001eb151600 Zea mays HOM05D000394 ORTHO05D016690 3.5e-09 67.4 82 47.6
MCO06G001 Micromonas commoda HOM05D005340 ORTHO05D006693 1.0e-08 65.9 91 44.0
Zm00001eb258640 Zea mays HOM05D004997 ORTHO05D005921 1.0e-08 65.9 57 59.6
Lsat_1_v5_gn_3_39780 Lactuca sativa HOM05D005587 ORTHO05D007287 4.3e-07 60.5 284 26.4
PGR004G1682 Punica granatum HOM05D005587 ORTHO05D007287 5.6e-07 60.1 314 25.8
Aa31LG1G26200 Aethionema arabicum HOM05D005587 ORTHO05D007287 9.5e-07 59.3 266 27.1
BcaB02g08845 Brassica carinata HOM05D005587 ORTHO05D007287 1.6e-06 58.5 349 24.1
Sabra17G0094300 Salix brachista HOM05D005340 ORTHO05D349615 3.6e-06 57.4 67 58.2


User provided reference genes

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