Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0116 Trochodendron aralioides HOM05D003912 ORTHO05D004409 3.2e-26 120.9 58 100.0
QL06p025007 Quercus lobata HOM05D003912 ORTHO05D004409 3.4e-20 100.9 58 82.8
TWI09G0574 Tripterygium wilfordii HOM05D003912 ORTHO05D004409 2.2e-19 98.2 57 80.7
Manes.15G054100 Manihot esculenta HOM05D003912 ORTHO05D004409 4.9e-19 97.1 59 79.7
TWI09G1517 Tripterygium wilfordii HOM05D003912 ORTHO05D004409 8.3e-19 96.3 57 78.9
Haze_11613 Corylus avellana HOM05D003912 ORTHO05D004409 1.4e-18 95.5 59 76.3
Manes.03G147300 Manihot esculenta HOM05D003912 ORTHO05D004409 2.4e-18 94.7 59 76.3
Potri.017G055600 Populus trichocarpa HOM05D003912 ORTHO05D004409 4.1e-18 94.0 58 70.7
Glyma.18G000500 Glycine max HOM05D003912 ORTHO05D004409 9.2e-18 92.8 59 78.0
Sabra17G0047100 Salix brachista HOM05D003912 ORTHO05D004409 1.2e-17 92.4 59 71.2
TWI73G0783 Tripterygium wilfordii HOM05D003912 ORTHO05D004409 1.6e-17 92.0 57 71.9
Lj6g0024996 Lotus japonicus HOM05D003912 ORTHO05D004409 3.5e-17 90.9 57 73.7
Rhsim02G0058800 Rhododendron simsii HOM05D003912 ORTHO05D004409 4.6e-17 90.5 58 72.4
RcHm_v2.0_Chr4g0415171 Rosa chinensis HOM05D003912 ORTHO05D004409 7.8e-17 89.7 57 75.4
arahy.Tifrunner.gnm1.ann1.2BAE9R Arachis hypogaea HOM05D003912 ORTHO05D004409 1.0e-16 89.4 58 75.9
Ciclev10004226m.g Citrus clementina HOM05D003912 ORTHO05D004409 1.3e-16 89.0 59 76.3
Glyma.11G256600 Glycine max HOM05D003912 ORTHO05D004409 1.3e-16 89.0 60 76.7
arahy.Tifrunner.gnm1.ann1.1SB5R1 Arachis hypogaea HOM05D003912 ORTHO05D004409 1.7e-16 88.6 58 75.9
CiPaw.01G120700 Carya illinoinensis HOM05D003912 ORTHO05D004409 2.3e-16 88.2 59 72.9
Atru.chr4.1690 Acer truncatum HOM05D003912 ORTHO05D004409 3.0e-16 87.8 56 69.6
FvH4_4g16490 Fragaria vesca HOM05D003912 ORTHO05D004409 3.0e-16 87.8 57 73.7
FAN12G1567 Fragaria x ananassa HOM05D003912 ORTHO05D004409 3.0e-16 87.8 57 73.7
Lalb_Chr08g0230331 Lupinus albus HOM05D003912 ORTHO05D004409 3.9e-16 87.4 57 71.9
Nn3g20024 Nelumbo nucifera HOM05D003912 ORTHO05D004409 3.9e-16 87.4 58 70.7
Prupe.1G008700 Prunus persica HOM05D003912 ORTHO05D004409 3.9e-16 87.4 57 70.2
Ca_16382_v3 Cicer arietinum L. HOM05D003912 ORTHO05D004409 5.0e-16 87.0 58 75.9
CSS0014108 Camellia sinensis var. sinensis HOM05D003912 ORTHO05D004409 6.6e-16 86.7 58 69.0
FAN17G2369 Fragaria x ananassa HOM05D003912 ORTHO05D004409 6.6e-16 86.7 57 73.7
FAN22G2235 Fragaria x ananassa HOM05D003912 ORTHO05D004409 6.6e-16 86.7 57 71.9
Nn1g07894 Nelumbo nucifera HOM05D003912 ORTHO05D004409 8.6e-16 86.3 58 70.7
PSO541G1554 Papaver somniferum HOM05D003912 ORTHO05D004409 8.6e-16 86.3 56 71.4
AUR62018591 Chenopodium quinoa HOM05D003912 ORTHO05D004409 1.1e-15 85.9 59 66.1
FAN07G1879 Fragaria x ananassa HOM05D003912 ORTHO05D004409 1.1e-15 85.9 57 71.9
Medtr3g083600 Medicago truncatula HOM05D003912 ORTHO05D004409 1.1e-15 85.9 58 72.4
Actinidia39238 Actinidia chinensis HOM05D003912 ORTHO05D004409 1.5e-15 85.5 58 69.0
Aqoxy2G03850 Aquilegia oxysepala HOM05D003912 ORTHO05D004409 1.5e-15 85.5 58 69.0
TPR.G19333 Trifolium pratense HOM05D003912 ORTHO05D004409 1.9e-15 85.1 58 72.4
Thecc.04G203100 Theobroma cacao HOM05D003912 ORTHO05D004409 3.3e-15 84.3 59 69.5
MD04G1009400 Malus domestica HOM05D003912 ORTHO05D004409 9.5e-15 82.8 57 66.7
Phvul.001G268800 Phaseolus vulgaris HOM05D003912 ORTHO05D004409 9.5e-15 82.8 56 69.6
Psat5g101840 Pisum sativum HOM05D003912 ORTHO05D004409 9.5e-15 82.8 60 70.0
PSO675G6815 Papaver somniferum HOM05D003912 ORTHO05D004409 1.2e-14 82.4 56 67.9
MD13G1284700 Malus domestica HOM05D003912 ORTHO05D004409 1.6e-14 82.0 59 66.1
Actinidia27226 Actinidia chinensis HOM05D003912 ORTHO05D004409 2.1e-14 81.6 58 67.2
AUR62020827 Chenopodium quinoa HOM05D003912 ORTHO05D004409 2.8e-14 81.3 59 62.7
Lj6C552G3 Lonicera japonica HOM05D003912 ORTHO05D004409 2.8e-14 81.3 60 66.7
THA.LOC104801027 Tarenaya hassleriana HOM05D003912 ORTHO05D004409 6.2e-14 80.1 58 63.8
GSVIVG01021053001 Vitis vinifera HOM05D003912 ORTHO05D004409 6.2e-14 80.1 60 66.7
Duzib212G0883 Durio zibethinus HOM05D003912 ORTHO05D004409 8.1e-14 79.7 59 66.1
Gohir.D02G124000 Gossypium hirsutum HOM05D003912 ORTHO05D004409 1.1e-13 79.3 59 62.7
Gorai.005G130100 Gossypium raimondii HOM05D003912 ORTHO05D004409 1.1e-13 79.3 59 62.7
Oeu049032.1 Olea europaea HOM05D003912 ORTHO05D004409 1.1e-13 79.3 56 67.9
AL4G28230 Arabidopsis lyrata HOM05D003912 ORTHO05D004409 1.8e-13 78.6 60 66.7
TAR636G0234 Trochodendron aralioides HOM05D003912 ORTHO05D004409 1.8e-13 78.6 58 67.2
Nitab4.5_0007416g0010 Nicotiana tabacum HOM05D003912 ORTHO05D004409 2.3e-13 78.2 58 67.2
Eucgr.H02776 Eucalyptus grandis HOM05D003912 ORTHO05D004409 3.1e-13 77.8 58 65.5
Nitab4.5_0006297g0020 Nicotiana tabacum HOM05D003912 ORTHO05D004409 3.1e-13 77.8 58 65.5
Carub.0004s1415 Capsella rubella HOM05D003912 ORTHO05D004409 5.2e-13 77.0 60 66.7
CAN.G1635.11 Capsicum annuum HOM05D003912 ORTHO05D004409 5.2e-13 77.0 58 65.5
SalBow3G1138 Salvia bowleyana HOM05D003912 ORTHO05D004409 5.2e-13 77.0 56 64.3
Cc03_g07890 Coffea canephora HOM05D003912 ORTHO05D004409 6.8e-13 76.6 58 63.8
Nitab4.5_0002260g0180 Nicotiana tabacum HOM05D003912 ORTHO05D004409 6.8e-13 76.6 57 68.4
ECA248G0878 Erigeron canadensis HOM05D003912 ORTHO05D004409 8.9e-13 76.3 59 67.8
SGA_v2.0_scaffold626G53246 Striga asiatica HOM05D003912 ORTHO05D004409 8.9e-13 76.3 56 60.7
Peaxi162Scf00047g00430 Petunia axillaris HOM05D003912 ORTHO05D004409 1.2e-12 75.9 58 63.8
ECA233G4597 Erigeron canadensis HOM05D003912 ORTHO05D004409 1.5e-12 75.5 58 69.0
Peaxi162Scf00423g00315 Petunia axillaris HOM05D003912 ORTHO05D004409 1.5e-12 75.5 56 66.1
Os09g0505100 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 2.0e-12 75.1 57 57.9
PGR083G0566 Punica granatum HOM05D003912 ORTHO05D004409 2.6e-12 74.7 58 63.8
PGSC0003DMG400031289 Solanum tuberosum HOM05D003912 ORTHO05D004409 2.6e-12 74.7 58 63.8
Solyc09g091930.3 Solanum lycopersicum HOM05D003912 ORTHO05D004409 3.4e-12 74.3 58 62.1
Sopen09g034830 Solanum pennellii HOM05D003912 ORTHO05D004409 3.4e-12 74.3 58 62.1
CAN.G765.21 Capsicum annuum HOM05D003912 ORTHO05D004409 4.4e-12 73.9 56 64.3
Zm00001eb102350 Zea mays HOM05D003912 ORTHO05D004409 4.4e-12 73.9 57 56.1
Nitab4.5_0003502g0040 Nicotiana tabacum HOM05D003912 ORTHO05D004409 5.8e-12 73.6 56 62.5
Oeu055784.1 Olea europaea HOM05D003912 ORTHO05D004409 5.8e-12 73.6 56 62.5
Thhalv10006716m.g Eutrema salsugineum HOM05D003912 ORTHO05D004409 7.5e-12 73.2 57 63.2
AT2G32780 Arabidopsis thaliana HOM05D003912 ORTHO05D004409 9.8e-12 72.8 60 63.3
Aa31LG5G4440 Aethionema arabicum HOM05D003912 ORTHO05D004409 1.3e-11 72.4 60 58.3
MSTRG.4227 Avicennia marina HOM05D003912 ORTHO05D004409 1.7e-11 72.0 58 63.8
HanXRQChr01g0022461 Helianthus annuus HOM05D003912 ORTHO05D004409 2.2e-11 71.6 58 60.3
Sabra17G0049300 Salix brachista HOM05D003912 ORTHO05D004409 2.2e-11 71.6 47 70.2
Lsat_1_v5_gn_1_72160 Lactuca sativa HOM05D003912 ORTHO05D004409 2.9e-11 71.2 55 61.8
unitig_747.g21697 Utricularia gibba HOM05D003912 ORTHO05D004409 2.9e-11 71.2 58 60.3
AT1G04860 Arabidopsis thaliana HOM05D003912 ORTHO05D004409 6.4e-11 70.1 57 59.6
BcaB03g13468 Brassica carinata HOM05D003912 ORTHO05D004409 6.4e-11 70.1 57 54.4
CARHR126680 Cardamine hirsuta HOM05D003912 ORTHO05D004409 6.4e-11 70.1 58 60.3
vmacro15538 Vaccinium macrocarpon HOM05D003912 ORTHO05D004409 6.4e-11 70.1 46 69.6
ClCG05G003290 Citrullus lanatus HOM05D003912 ORTHO05D004409 8.3e-11 69.7 56 58.9
MELO3C006310.2 Cucumis melo HOM05D003912 ORTHO05D004409 8.3e-11 69.7 56 58.9
Solyc05g053690.2 Solanum lycopersicum HOM05D003912 ORTHO05D004409 8.3e-11 69.7 57 63.2
Pp3c18_14990 Physcomitrium patens HOM05D003912 ORTHO05D004409 1.1e-10 69.3 59 55.9
Carub.0001s0410 Capsella rubella HOM05D003912 ORTHO05D004409 1.4e-10 68.9 57 59.6
CsaV3_3G010910 Cucumis sativus L. HOM05D003912 ORTHO05D004409 1.4e-10 68.9 56 58.9
Migut.G00711 Erythranthe guttata HOM05D003912 ORTHO05D004409 1.4e-10 68.9 58 60.3
PGSC0003DMG401015759 Solanum tuberosum HOM05D003912 ORTHO05D004409 1.4e-10 68.9 56 58.9
Aa31LG1G19870 Aethionema arabicum HOM05D003912 ORTHO05D004409 1.9e-10 68.6 58 60.3
Pp3c19_20640 Physcomitrium patens HOM05D003912 ORTHO05D004409 1.9e-10 68.6 56 55.4
Sed0005652 Sechium edule HOM05D003912 ORTHO05D004409 1.9e-10 68.6 56 55.4
THA.LOC104826119 Tarenaya hassleriana HOM05D003912 ORTHO05D004409 1.9e-10 68.6 61 57.4
Pp3c22_11200 Physcomitrium patens HOM05D003912 ORTHO05D004409 2.4e-10 68.2 58 56.9
EL10Ac1g01993 Beta vulgaris HOM05D003912 ORTHO05D004409 3.2e-10 67.8 59 57.6
Sp1g03710 Schrenkiella parvula HOM05D003912 ORTHO05D004409 3.2e-10 67.8 57 57.9
BraA05t20221Z Brassica rapa HOM05D003912 ORTHO05D004409 4.1e-10 67.4 58 56.9
Lsat_1_v5_gn_6_60801 Lactuca sativa HOM05D003912 ORTHO05D004409 4.1e-10 67.4 57 59.6
Sed0023360 Sechium edule HOM05D003912 ORTHO05D004409 4.1e-10 67.4 56 57.1
Sopen05g032180 Solanum pennellii HOM05D003912 ORTHO05D004409 4.1e-10 67.4 56 57.1
Mapoly0123s0038 Marchantia polymorpha HOM05D003912 ORTHO05D004409 5.4e-10 67.0 59 54.2
AL1G14580 Arabidopsis lyrata HOM05D003912 ORTHO05D004409 7.1e-10 66.6 57 56.1
BcaC07g42158 Brassica carinata HOM05D003912 ORTHO05D004409 7.1e-10 66.6 60 58.3
A08p36670 Brassica napus HOM05D003912 ORTHO05D004409 7.1e-10 66.6 57 56.1
C08p52040 Brassica napus HOM05D003912 ORTHO05D004409 7.1e-10 66.6 60 58.3
BolC8t52736H Brassica oleracea HOM05D003912 ORTHO05D004409 7.1e-10 66.6 60 58.3
BraA08t35570Z Brassica rapa HOM05D003912 ORTHO05D004409 7.1e-10 66.6 57 56.1
CARHR004250 Cardamine hirsuta HOM05D003912 ORTHO05D004409 7.1e-10 66.6 58 55.2
BcaC07g36874 Brassica carinata HOM05D003912 ORTHO05D004409 2.1e-09 65.1 57 57.9
C08p01540 Brassica napus HOM05D003912 ORTHO05D004409 2.1e-09 65.1 57 57.9
BolC8t46959H Brassica oleracea HOM05D003912 ORTHO05D004409 2.1e-09 65.1 57 57.9
HPP92_013626 Vanilla planifolia HOM05D003912 ORTHO05D004409 2.7e-09 64.7 61 55.7
BolC4t23225H Brassica oleracea HOM05D003912 ORTHO05D004409 4.6e-09 63.9 58 55.2
EL10Ac2g03910 Beta vulgaris HOM05D003912 ORTHO05D004409 6.0e-09 63.5 60 55.0
Migut.N00208 Erythranthe guttata HOM05D003912 ORTHO05D004409 1.0e-08 62.8 56 53.6
Os08g0528000 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 1.0e-08 62.8 54 51.9
Os08g0528100 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 1.0e-08 62.8 54 53.7
ATR0609G080 Amborella trichopoda HOM05D003912 ORTHO05D004409 1.3e-08 62.4 56 58.9
C04p16750 Brassica napus HOM05D003912 ORTHO05D004409 1.3e-08 62.4 58 55.2
BraA09t42101Z Brassica rapa HOM05D003912 ORTHO05D004409 1.3e-08 62.4 60 51.7
Os11g0619500 Oryza sativa ssp. japonica HOM05D005161 ORTHO05D006816 1.3e-08 62.4 55 49.1
TAR365G1117 Trochodendron aralioides HOM05D003912 ORTHO05D004409 1.3e-08 62.4 46 60.9
COL.COLO4_20146 Corchorus olitorius HOM05D003912 ORTHO05D004409 3.0e-08 61.2 47 59.6
SEGI_05196 Sequoiadendron giganteum HOM05D003912 ORTHO05D004409 3.0e-08 61.2 60 51.7
Zm00001eb175050 Zea mays HOM05D003912 ORTHO05D004409 3.0e-08 61.2 57 52.6
A09p67710 Brassica napus HOM05D003912 ORTHO05D004409 3.9e-08 60.8 59 52.5
Os08g0527900 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 5.1e-08 60.5 57 52.6
Hund18994 Selenicereus undatus HOM05D003912 ORTHO05D004409 5.1e-08 60.5 49 61.2
Os08g0527100 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 2.5e-07 58.2 54 51.9
SEGI_16543 Sequoiadendron giganteum HOM05D003912 ORTHO05D004409 2.5e-07 58.2 60 50.0
Sabra16G0199600 Salix brachista HOM05D003912 ORTHO05D004409 2.1e-06 55.1 42 54.8
BcaB01g00970 Brassica carinata HOM05D003912 ORTHO05D004409 3.6e-06 54.3 33 75.8
PSO832G3643 Papaver somniferum HOM05D000344 ORTHO05D004409 3.6e-06 54.3 53 52.8
PSO832G3940 Papaver somniferum HOM05D003912 ORTHO05D004409 6.2e-06 53.5 54 57.4
TWI79G1464 Tripterygium wilfordii HOM05D006162 ORTHO05D007627 6.2e-06 53.5 56 51.8
PSO832G1963 Papaver somniferum HOM05D003912 ORTHO05D004409 8.1e-06 53.1 53 50.9


User provided reference genes

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