Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0076 Trochodendron aralioides HOM05D005874 ORTHO05D007206 1.8e-213 745.7 394 100.0
QL03p002925 Quercus lobata HOM05D005874 ORTHO05D007206 1.8e-181 639.4 392 79.6
GSVIVG01022009001 Vitis vinifera HOM05D005874 ORTHO05D007206 3.7e-179 631.7 392 77.8
CiPaw.07G012300 Carya illinoinensis HOM05D005874 ORTHO05D007206 2.4e-178 629.0 392 78.3
Hma1.2p1_0071F.1_g037960 Hydrangea macrophylla HOM05D005874 ORTHO05D007206 1.6e-174 616.3 392 76.8
CsaV3_3G003940 Cucumis sativus L. HOM05D005874 ORTHO05D007206 2.6e-172 609.0 392 73.7
Ciclev10001418m.g Citrus clementina HOM05D005874 ORTHO05D007206 5.8e-172 607.8 394 79.9
MELO3C014079.2 Cucumis melo HOM05D005874 ORTHO05D007206 2.9e-171 605.5 392 73.2
QL03p003516 Quercus lobata HOM05D005874 ORTHO05D007206 4.9e-171 604.7 469 66.3
CSS0017417 Camellia sinensis var. sinensis HOM05D005874 ORTHO05D007206 2.4e-170 602.4 416 72.4
Lj1g0003731 Lotus japonicus HOM05D005874 ORTHO05D007206 2.4e-170 602.4 394 79.2
CANSAT54G0668 Cannabis sativa HOM05D005874 ORTHO05D007206 5.4e-170 601.3 395 80.0
arahy.Tifrunner.gnm1.ann1.QVQE66 Arachis hypogaea HOM05D005874 ORTHO05D007206 9.2e-170 600.5 394 76.1
Glyma.19G239400 Glycine max HOM05D005874 ORTHO05D007206 9.2e-170 600.5 394 73.4
Aqoxy5G00596 Aquilegia oxysepala HOM05D005874 ORTHO05D007206 1.2e-169 600.1 389 75.8
arahy.Tifrunner.gnm1.ann1.MWM6LR Arachis hypogaea HOM05D005874 ORTHO05D007206 2.7e-169 599.0 394 75.9
Prupe.6G333100 Prunus persica HOM05D005874 ORTHO05D007206 6.0e-169 597.8 392 74.2
Phvul.006G096000 Phaseolus vulgaris HOM05D005874 ORTHO05D007206 1.3e-168 596.7 392 73.5
Actinidia05739 Actinidia chinensis HOM05D005874 ORTHO05D007206 3.0e-168 595.5 392 74.2
PSO832G1738 Papaver somniferum HOM05D005874 ORTHO05D007206 8.6e-168 594.0 390 74.1
Dinv22927 Davidia involucrata HOM05D005874 ORTHO05D007206 1.5e-167 593.2 392 75.3
MD04G1213200 Malus domestica HOM05D005874 ORTHO05D007206 4.3e-167 591.7 392 73.2
Actinidia30901 Actinidia chinensis HOM05D005874 ORTHO05D007206 5.6e-167 591.3 392 76.8
VMungo0540G0326 Vigna mungo HOM05D005874 ORTHO05D007206 2.1e-166 589.3 380 73.2
Glyma.03G242000 Glycine max HOM05D005874 ORTHO05D007206 2.8e-166 589.0 394 72.1
Lalb_Chr15g0077001 Lupinus albus HOM05D005874 ORTHO05D007206 1.8e-165 586.3 392 71.7
Medtr7g114080 Medicago truncatula HOM05D005874 ORTHO05D007206 2.3e-165 585.9 395 72.4
Sc06g0003460 Simmondsia chinensis HOM05D005874 ORTHO05D007206 8.9e-165 583.9 390 72.3
MD12G1227400 Malus domestica HOM05D005874 ORTHO05D007206 2.0e-164 582.8 392 72.7
TWI36G0483 Tripterygium wilfordii HOM05D005874 ORTHO05D007206 2.0e-164 582.8 392 72.7
Psat3g009240 Pisum sativum HOM05D005874 ORTHO05D007206 9.9e-164 580.5 396 71.5
TPR.G21789 Trifolium pratense HOM05D005874 ORTHO05D007206 2.9e-163 578.9 396 70.7
Atru.chr2.537 Acer truncatum HOM05D005874 ORTHO05D007206 7.8e-161 570.9 363 76.3
Gohir.D13G178100 Gossypium hirsutum HOM05D005874 ORTHO05D007206 2.3e-160 569.3 392 70.9
RcHm_v2.0_Chr3g0453421 Rosa chinensis HOM05D005874 ORTHO05D007206 3.0e-160 568.9 392 69.9
Eucgr.B02032 Eucalyptus grandis HOM05D005874 ORTHO05D007206 3.9e-160 568.5 391 70.6
FvH4_6g04920 Fragaria vesca HOM05D005874 ORTHO05D007206 5.1e-160 568.2 392 69.6
Gorai.013G203400 Gossypium raimondii HOM05D005874 ORTHO05D007206 1.9e-159 566.2 392 70.7
Rhsim07G0178000 Rhododendron simsii HOM05D005874 ORTHO05D007206 3.3e-159 565.5 403 74.4
THA.LOC104818669 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 9.6e-159 563.9 393 74.8
FAN05G2497 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.2e-158 563.5 392 68.9
Cc02_g32810 Coffea canephora HOM05D005874 ORTHO05D007206 2.1e-158 562.8 391 74.2
Ah.04g159940 Amaranthus hybridus HOM05D005874 ORTHO05D007206 3.6e-158 562.0 392 70.2
Duzib128G0205 Durio zibethinus HOM05D005874 ORTHO05D007206 4.7e-158 561.6 369 79.1
FAN05G4189 Fragaria x ananassa HOM05D005874 ORTHO05D007206 4.7e-158 561.6 392 68.6
vmacro05048 Vaccinium macrocarpon HOM05D005874 ORTHO05D007206 1.8e-157 559.7 438 68.9
Migut.L01513 Erythranthe guttata HOM05D005874 ORTHO05D007206 2.4e-157 559.3 392 69.4
Oeu052135.1 Olea europaea HOM05D005874 ORTHO05D007206 6.9e-157 557.8 392 74.7
MSTRG.10544 Avicennia marina HOM05D005874 ORTHO05D007206 3.4e-156 555.4 392 68.4
ECA232G3849 Erigeron canadensis HOM05D005874 ORTHO05D007206 3.4e-156 555.4 393 69.0
FAN09G3845 Fragaria x ananassa HOM05D005874 ORTHO05D007206 3.8e-155 552.0 392 68.6
Sopen08g010120 Solanum pennellii HOM05D005874 ORTHO05D007206 4.9e-155 551.6 392 68.4
Lsat_1_v5_gn_4_139320 Lactuca sativa HOM05D005874 ORTHO05D007206 1.1e-154 550.4 395 67.1
Solyc08g029200.3 Solanum lycopersicum HOM05D005874 ORTHO05D007206 1.1e-154 550.4 392 68.1
HanXRQChr09g0254601 Helianthus annuus HOM05D005874 ORTHO05D007206 2.4e-154 549.3 395 67.1
FAN14G1317 Fragaria x ananassa HOM05D005874 ORTHO05D007206 3.2e-154 548.9 392 68.1
CAN.G56.14 Capsicum annuum HOM05D005874 ORTHO05D007206 7.1e-154 547.7 392 68.6
Cpa.g.sc84.114 Carica papaya HOM05D005874 ORTHO05D007206 3.9e-152 542.0 392 67.9
PSO210G2121 Papaver somniferum HOM05D005874 ORTHO05D007206 6.6e-152 541.2 350 75.7
THA.LOC104802814 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 2.1e-150 536.2 394 71.8
CDE12G0821 Ceratophyllum demersum HOM05D005874 ORTHO05D007206 1.4e-149 533.5 390 66.2
ATR0487G009 Amborella trichopoda HOM05D005874 ORTHO05D007206 4.0e-149 531.9 395 67.6
Sp2g20520 Schrenkiella parvula HOM05D005874 ORTHO05D007206 2.6e-148 529.3 394 69.5
Aa31LG5G15480 Aethionema arabicum HOM05D005874 ORTHO05D007206 5.8e-148 528.1 398 66.6
Thecc.05G296800 Theobroma cacao HOM05D005874 ORTHO05D007206 9.9e-148 527.3 340 80.9
Carub.0003s0419 Capsella rubella HOM05D005874 ORTHO05D007206 3.2e-146 522.3 402 70.4
HPP92_003153 Vanilla planifolia HOM05D005874 ORTHO05D007206 2.7e-145 519.2 390 63.6
Thhalv10020879m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 2.3e-144 516.2 399 70.2
Thhalv10004370m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 4.3e-143 511.9 394 67.5
C09p05680 Brassica napus HOM05D005874 ORTHO05D007206 1.6e-142 510.0 394 63.7
BolC9t53497H Brassica oleracea HOM05D005874 ORTHO05D007206 1.6e-142 510.0 394 63.7
A09p05220 Brassica napus HOM05D005874 ORTHO05D007206 6.2e-142 508.1 394 63.7
BcaC04g23685 Brassica carinata HOM05D005874 ORTHO05D007206 1.1e-141 507.3 394 63.5
BraA09t36161Z Brassica rapa HOM05D005874 ORTHO05D007206 1.4e-141 506.9 394 63.5
CARHR185900 Cardamine hirsuta HOM05D005874 ORTHO05D007206 1.2e-140 503.8 392 67.6
BcaC04g23688 Brassica carinata HOM05D005874 ORTHO05D007206 5.8e-140 501.5 394 63.5
Os03g0363900 Oryza sativa ssp. japonica HOM05D005874 ORTHO05D007206 3.8e-139 498.8 390 61.5
PGR031G1977 Punica granatum HOM05D005874 ORTHO05D007206 2.4e-138 496.1 395 68.4
BcaC05g29976 Brassica carinata HOM05D005874 ORTHO05D007206 4.2e-138 495.4 382 69.9
C05p62300 Brassica napus HOM05D005874 ORTHO05D007206 2.1e-137 493.0 382 70.4
BolC5t34886H Brassica oleracea HOM05D005874 ORTHO05D007206 1.3e-136 490.3 382 69.9
Cfa006515 Carpinus fangiana HOM05D005874 ORTHO05D007206 6.7e-136 488.0 325 71.4
Dinv40230 Davidia involucrata HOM05D005874 ORTHO05D007206 2.5e-135 486.1 301 78.7
EL10Ac4g09284 Beta vulgaris HOM05D005874 ORTHO05D007206 5.6e-135 485.0 391 67.0
BraA05t22992Z Brassica rapa HOM05D005874 ORTHO05D007206 4.8e-134 481.9 388 68.0
A05p42610 Brassica napus HOM05D005874 ORTHO05D007206 1.8e-133 479.9 388 67.8
unitig_578.g16415 Utricularia gibba HOM05D005874 ORTHO05D007206 6.9e-133 478.0 374 62.6
Hund07023 Selenicereus undatus HOM05D005874 ORTHO05D007206 1.0e-131 474.2 394 59.4
Gohir.A13G172200 Gossypium hirsutum HOM05D005874 ORTHO05D007206 1.4e-130 470.3 392 61.5
BcaB04g19660 Brassica carinata HOM05D005874 ORTHO05D007206 3.3e-127 459.1 376 62.8
Zm00001eb394310 Zea mays HOM05D005874 ORTHO05D007206 4.1e-125 452.2 391 57.8
Haze_04267 Corylus avellana HOM05D005874 ORTHO05D007206 5.3e-125 451.8 392 59.7
Sabra05G0040000 Salix brachista HOM05D005874 ORTHO05D007206 9.0e-125 451.1 473 53.1
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 3.4e-124 449.1 323 66.6
Peaxi162Scf00071g00714 Petunia axillaris HOM05D005874 ORTHO05D007206 5.9e-124 448.4 390 59.0
COL.COLO4_13564 Corchorus olitorius HOM05D005874 ORTHO05D007206 7.6e-124 448.0 290 81.4
BcaB04g19663 Brassica carinata HOM05D005874 ORTHO05D007206 5.0e-123 445.3 394 58.9
Lj9A677G37 Lonicera japonica HOM05D005874 ORTHO05D007206 7.9e-121 438.0 344 68.3
Nn4g26084 Nelumbo nucifera HOM05D005874 ORTHO05D007206 2.6e-116 422.9 286 72.7
SGA_v2.0_scaffold21G09411 Striga asiatica HOM05D005874 ORTHO05D007206 3.4e-116 422.5 369 60.2
Nitab4.5_0005924g0020 Nicotiana tabacum HOM05D005874 ORTHO05D007206 3.1e-109 399.4 347 60.2
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 6.9e-109 398.3 259 71.4
Manes.08G125000 Manihot esculenta HOM05D005874 ORTHO05D007206 2.6e-108 396.4 261 79.7
Aa31LG11G9040 Aethionema arabicum HOM05D005874 ORTHO05D007206 5.0e-107 392.1 301 64.5
AL3G15310 Arabidopsis lyrata HOM05D005874 ORTHO05D007206 5.2e-104 382.1 315 69.8
CARHR079280 Cardamine hirsuta HOM05D005874 ORTHO05D007206 6.7e-104 381.7 312 68.9
Potri.005G041000 Populus trichocarpa HOM05D005874 ORTHO05D007206 7.4e-103 378.3 259 77.2
AT3G04970 Arabidopsis thaliana HOM05D005874 ORTHO05D007206 1.3e-102 377.5 314 69.1
Atru.chr2.564 Acer truncatum HOM05D005874 ORTHO05D007206 1.1e-90 337.8 299 59.9
SEGI_36862 Sequoiadendron giganteum HOM05D005874 ORTHO05D007206 1.6e-89 334.0 324 52.8
Sp3g03790 Schrenkiella parvula HOM05D005874 ORTHO05D007206 1.5e-82 310.8 264 68.6
Mapoly0004s0142 Marchantia polymorpha HOM05D005874 ORTHO05D007206 7.5e-79 298.5 395 44.1
Lj9A680G39 Lonicera japonica HOM05D005874 ORTHO05D007206 6.6e-75 285.4 211 67.3
AUR62000904 Chenopodium quinoa HOM05D005874 ORTHO05D007206 1.2e-71 274.6 188 70.7
QL03p003187 Quercus lobata HOM05D005874 ORTHO05D007206 1.2e-65 254.6 282 52.8
AUR62005071 Chenopodium quinoa HOM05D005874 ORTHO05D007206 1.4e-61 241.1 159 71.7
SMO356G0262 Selaginella moellendorffii HOM05D005874 ORTHO05D007206 1.2e-60 238.0 300 44.7
Pp3c9_17640 Physcomitrium patens HOM05D005874 ORTHO05D007206 7.3e-58 228.8 314 45.9
CBR_g48996 Chara braunii HOM05D000019 ORTHO05D001702 9.5e-58 228.4 311 46.9
Ca_09385_v3 Cicer arietinum L. HOM05D005874 ORTHO05D007206 3.1e-56 223.4 148 73.6
Duzib192G0912 Durio zibethinus HOM05D005874 ORTHO05D007206 2.1e-52 210.7 150 69.3
Duzib192G0784 Durio zibethinus HOM05D005874 ORTHO05D007206 2.7e-52 210.3 155 66.5
AagrBONN_evm.TU.Sc2ySwM_362.837 Anthoceros agrestis HOM05D005874 ORTHO05D007206 1.7e-51 207.6 207 46.4
Duzib192G0855 Durio zibethinus HOM05D005874 ORTHO05D007206 1.7e-51 207.6 151 68.2
FAN14G2574 Fragaria x ananassa HOM05D005874 ORTHO05D007206 3.0e-51 206.8 132 75.0
Cre02.g090100 Chlamydomonas reinhardtii HOM05D005874 ORTHO05D007206 1.6e-33 147.9 300 33.7
Nitab4.5_0000176g0130 Nicotiana tabacum HOM05D005874 ORTHO05D007206 8.4e-30 135.6 81 71.6
Nitab4.5_0005924g0010 Nicotiana tabacum HOM05D005874 ORTHO05D007206 3.2e-29 133.7 81 70.4
Duzib192G0979 Durio zibethinus HOM05D005874 ORTHO05D007206 1.5e-26 124.8 101 67.3
Gorai.004G244300 Gossypium raimondii HOM05D005874 ORTHO05D007206 7.4e-26 122.5 147 49.0
MCO05G448 Micromonas commoda HOM05D005874 ORTHO05D007206 2.1e-25 120.9 287 29.3
C04p14840 Brassica napus HOM05D005874 ORTHO05D007206 9.9e-23 112.1 78 67.9
BolC4t23058H Brassica oleracea HOM05D008292 ORTHO05D003352 9.9e-23 112.1 78 67.9
BcaC02g11489 Brassica carinata HOM05D005874 ORTHO05D007206 1.3e-22 111.7 78 67.9
Nitab4.5_0000176g0140 Nicotiana tabacum HOM05D005874 ORTHO05D007206 4.3e-18 96.7 58 79.3
PRCOL_00005730 Prasinoderma coloniale HOM05D005874 ORTHO05D007206 1.1e-16 92.0 384 25.5
C02p36570 Brassica napus HOM05D005874 ORTHO05D007206 2.4e-16 90.9 58 67.2
Duzib177G0334 Durio zibethinus HOM05D000092 ORTHO05D000042 1.9e-13 81.3 131 38.9
arahy.Tifrunner.gnm1.ann1.LT36IY Arachis hypogaea HOM05D010413 ORTHO05D014444 5.7e-10 69.7 42 69.0
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 1.3e-09 68.6 42 69.0
arahy.Tifrunner.gnm1.ann1.IHLS5N Arachis hypogaea HOM05D010413 ORTHO05D014444 1.3e-09 68.6 42 69.0
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 2.8e-09 67.4 41 70.7
arahy.Tifrunner.gnm1.ann1.J0URVC Arachis hypogaea HOM05D010413 ORTHO05D014444 1.1e-08 65.5 41 68.3
arahy.Tifrunner.gnm1.ann1.L111E7 Arachis hypogaea HOM05D010413 ORTHO05D014444 1.1e-08 65.5 42 66.7
arahy.Tifrunner.gnm1.ann1.MPAX92 Arachis hypogaea HOM05D010413 ORTHO05D014444 1.1e-08 65.5 42 66.7
arahy.Tifrunner.gnm1.ann1.M9QEPL Arachis hypogaea HOM05D010413 ORTHO05D002299 1.4e-08 65.1 42 64.3
arahy.Tifrunner.gnm1.ann1.6EF6C9 Arachis hypogaea HOM05D010413 ORTHO05D014444 1.8e-08 64.7 41 68.3
arahy.Tifrunner.gnm1.ann1.ME0VC2 Arachis hypogaea HOM05D010413 ORTHO05D085118 2.4e-08 64.3 42 64.3
arahy.Tifrunner.gnm1.ann1.M7HUWS Arachis hypogaea HOM05D002233 ORTHO05D002299 3.1e-08 63.9 42 61.9
arahy.Tifrunner.gnm1.ann1.FWSD6F Arachis hypogaea HOM05D010413 ORTHO05D019779 5.3e-08 63.2 42 64.3
arahy.Tifrunner.gnm1.ann1.UH56EU Arachis hypogaea HOM05D002233 ORTHO05D002299 6.9e-08 62.8 42 61.9
arahy.Tifrunner.gnm1.ann1.T67Q9P Arachis hypogaea HOM05D010413 ORTHO05D014444 1.2e-07 62.0 40 65.0
arahy.Tifrunner.gnm1.ann1.QTEC4T Arachis hypogaea HOM05D010413 ORTHO05D014444 2.6e-07 60.8 42 59.5
arahy.Tifrunner.gnm1.ann1.1IC9XV Arachis hypogaea HOM05D010413 ORTHO05D002299 4.5e-07 60.1 42 61.9
arahy.Tifrunner.gnm1.ann1.AUS62E Arachis hypogaea HOM05D010413 ORTHO05D014444 4.5e-07 60.1 40 65.0
arahy.Tifrunner.gnm1.ann1.CL1AA5 Arachis hypogaea HOM05D010413 ORTHO05D014444 5.9e-07 59.7 42 64.3
arahy.Tifrunner.gnm1.ann1.HYYZ0X Arachis hypogaea HOM05D010413 ORTHO05D014444 3.8e-06 57.0 41 61.0


User provided reference genes

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