Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0031 Trochodendron aralioides HOM05D007634 ORTHO05D004310 4.5e-98 361.7 248 100.0
TAR365G0785 Trochodendron aralioides HOM05D007634 ORTHO05D004310 7.8e-50 201.4 230 74.3
Aqoxy2G02664 Aquilegia oxysepala HOM05D007634 ORTHO05D004310 2.2e-36 156.8 250 63.6
TAR636G1196 Trochodendron aralioides HOM05D007634 ORTHO05D004310 2.2e-36 156.8 184 77.7
Aqoxy5G02697 Aquilegia oxysepala HOM05D009154 ORTHO05D004310 7.1e-35 151.8 255 45.1
MBI19_g03266_MAGBIO Magnolia biondii HOM05D003564 ORTHO05D005332 3.0e-33 146.4 251 59.4
MBI18_g35543_MAGBIO Magnolia biondii HOM05D007634 ORTHO05D004310 3.9e-33 146.0 245 60.8
Haze_01337 Corylus avellana HOM05D007634 ORTHO05D004310 4.3e-32 142.5 257 56.4
Haze_01332 Corylus avellana HOM05D007634 ORTHO05D004310 7.4e-32 141.7 257 56.4
Cfa015285 Carpinus fangiana HOM05D007634 ORTHO05D004310 1.6e-31 140.6 257 56.0
Prupe.1G113900 Prunus persica HOM05D007634 ORTHO05D004310 6.2e-31 138.7 253 58.5
Dinv10123 Davidia involucrata HOM05D009814 ORTHO05D004310 1.2e-29 134.4 242 60.3
Nn3g21763 Nelumbo nucifera HOM05D007634 ORTHO05D004310 1.2e-29 134.4 198 68.7
MD16G1150300 Malus domestica HOM05D007634 ORTHO05D004310 3.4e-29 132.9 252 57.5
MD13G1149900 Malus domestica HOM05D007634 ORTHO05D004310 5.8e-29 132.1 251 57.8
FAN07G0504 Fragaria x ananassa HOM05D007634 ORTHO05D004310 4.9e-28 129.0 247 56.7
FAN12G0129 Fragaria x ananassa HOM05D007634 ORTHO05D004310 1.1e-27 127.9 247 56.3
RcHm_v2.0_Chr4g0425851 Rosa chinensis HOM05D007634 ORTHO05D004310 1.4e-27 127.5 247 57.1
Lj6A693T64 Lonicera japonica HOM05D007634 ORTHO05D004310 3.2e-27 126.3 251 51.4
FvH4_4g20190 Fragaria vesca HOM05D007634 ORTHO05D004310 5.5e-27 125.6 247 56.3
GSVIVG01031256001 Vitis vinifera HOM05D007634 ORTHO05D004310 5.5e-27 125.6 240 49.2
CiPaw.02G072900 Carya illinoinensis HOM05D007634 ORTHO05D004310 1.6e-26 124.0 254 56.7
QL06p012814 Quercus lobata HOM05D007634 ORTHO05D004310 2.1e-26 123.6 232 60.3
Thecc.01G317400 Theobroma cacao HOM05D009814 ORTHO05D004310 6.1e-26 122.1 220 59.1
Potri.010G148200 Populus trichocarpa HOM05D007634 ORTHO05D004310 7.9e-26 121.7 240 57.9
Sabra10G0114400 Salix brachista HOM05D007634 ORTHO05D004310 1.3e-25 120.9 241 57.3
TWI09G0962 Tripterygium wilfordii HOM05D007634 ORTHO05D004310 3.0e-25 119.8 251 55.8
Hma1.2p1_0408F.1_g146500 Hydrangea macrophylla HOM05D009814 ORTHO05D004310 3.9e-25 119.4 235 60.9
Nn4g25534 Nelumbo nucifera HOM05D009814 ORTHO05D004310 1.5e-24 117.5 223 61.4
Potri.008G102700 Populus trichocarpa HOM05D007634 ORTHO05D004310 1.5e-24 117.5 236 56.4
Ciclev10021807m.g Citrus clementina HOM05D009814 ORTHO05D004310 1.9e-24 117.1 242 54.1
Duzib138G1730 Durio zibethinus HOM05D009814 ORTHO05D004310 9.7e-24 114.8 220 57.3
COL.COLO4_23198 Corchorus olitorius HOM05D009814 ORTHO05D004310 3.7e-23 112.8 220 57.3
QL12p018988 Quercus lobata HOM05D009154 ORTHO05D004310 1.4e-22 110.9 238 40.8
GSVIVG01028151001 Vitis vinifera HOM05D009814 ORTHO05D004310 2.4e-22 110.2 245 57.1
Gorai.004G145000 Gossypium raimondii HOM05D009814 ORTHO05D004310 4.1e-22 109.4 242 54.1
CSS0049682 Camellia sinensis var. sinensis HOM05D007634 ORTHO05D004310 5.3e-22 109.0 242 53.7
PSO210G0186 Papaver somniferum HOM05D058645 ORTHO05D004310 9.0e-22 108.2 218 58.3
Gohir.A08G120000 Gossypium hirsutum HOM05D009814 ORTHO05D004310 2.6e-21 106.7 215 57.2
PSO761G0298 Papaver somniferum HOM05D058645 ORTHO05D004310 7.7e-21 105.1 218 57.3
Duzib211G0633 Durio zibethinus HOM05D009814 ORTHO05D004310 1.3e-20 104.4 245 47.3
Lj3A834G63 Lonicera japonica HOM05D007634 ORTHO05D004310 1.3e-20 104.4 233 45.5
CDE02G3511 Ceratophyllum demersum HOM05D063264 ORTHO05D004310 1.7e-20 104.0 244 55.3
Gohir.D08G141000 Gossypium hirsutum HOM05D009814 ORTHO05D004310 1.7e-20 104.0 242 52.9
Atru.chr5.960 Acer truncatum HOM05D009814 ORTHO05D004310 2.9e-20 103.2 253 54.9
Gohir.A11G108100 Gossypium hirsutum HOM05D009814 ORTHO05D004310 3.8e-20 102.8 220 55.5
GSVIVG01034962001 Vitis vinifera HOM05D007634 ORTHO05D004310 1.4e-19 100.9 251 47.4
TWI73G1001 Tripterygium wilfordii HOM05D007634 ORTHO05D004310 2.5e-19 100.1 251 54.6
Actinidia16871 Actinidia chinensis HOM05D013055 ORTHO05D012930 1.2e-18 97.8 185 63.2
Dinv44263 Davidia involucrata HOM05D007634 ORTHO05D004310 1.2e-18 97.8 197 59.9
CDE09G0065 Ceratophyllum demersum HOM05D063264 ORTHO05D004310 1.6e-18 97.4 246 49.6
Dinv15141 Davidia involucrata HOM05D007634 ORTHO05D004310 2.7e-18 96.7 183 65.0
Hma1.2p1_1400F.1_g280910 Hydrangea macrophylla HOM05D007634 ORTHO05D004310 4.6e-18 95.9 248 54.8
Manes.05G013000 Manihot esculenta HOM05D009154 ORTHO05D004310 7.9e-18 95.1 246 35.4
Sabra08G0077600 Salix brachista HOM05D007634 ORTHO05D004310 7.9e-18 95.1 277 44.4
Lj1C14T15 Lonicera japonica HOM05D009154 ORTHO05D004310 1.8e-17 94.0 222 36.0
ATR0693G086 Amborella trichopoda HOM05D007634 ORTHO05D004310 2.3e-17 93.6 221 47.1
Aqoxy6G01340 Aquilegia oxysepala HOM05D009814 ORTHO05D004310 2.3e-17 93.6 182 64.3
EL10As5g23572 Beta vulgaris HOM05D009154 ORTHO05D004310 2.3e-17 93.6 244 47.1
Eucgr.H04066 Eucalyptus grandis HOM05D007634 ORTHO05D004310 3.0e-17 93.2 254 52.8
Manes.15G001900 Manihot esculenta HOM05D007634 ORTHO05D004310 3.0e-17 93.2 249 53.8
CSS0041924 Camellia sinensis var. sinensis HOM05D015885 ORTHO05D012930 5.1e-17 92.4 191 52.4
CiPaw.01G136100 Carya illinoinensis HOM05D007634 ORTHO05D004310 5.1e-17 92.4 254 51.6
Cfa006724 Carpinus fangiana HOM05D013055 ORTHO05D014149 8.8e-17 91.7 239 53.1
Lalb_Chr18g0058621 Lupinus albus HOM05D007634 ORTHO05D004310 1.1e-16 91.3 254 52.4
Cpa.g.sc18.87 Carica papaya HOM05D009814 ORTHO05D004310 1.5e-16 90.9 249 50.6
PSO724G1196 Papaver somniferum HOM05D007634 ORTHO05D004310 3.3e-16 89.7 249 49.8
CSS0049163 Camellia sinensis var. sinensis HOM05D007634 ORTHO05D004310 5.7e-16 89.0 248 51.6
DCAR_026994 Daucus carota HOM05D007634 ORTHO05D004310 5.7e-16 89.0 241 38.2
Aqoxy2G02667 Aquilegia oxysepala HOM05D007634 ORTHO05D004310 9.7e-16 88.2 185 63.8
Hma1.2p1_0078F.1_g039860 Hydrangea macrophylla HOM05D007634 ORTHO05D004310 9.7e-16 88.2 221 57.5
Prupe.3G008100 Prunus persica HOM05D018099 ORTHO05D020712 9.7e-16 88.2 225 36.9
Sc13g0007130 Simmondsia chinensis HOM05D007634 ORTHO05D004310 1.7e-15 87.4 250 42.0
Haze_04036 Corylus avellana HOM05D013055 ORTHO05D014149 2.2e-15 87.0 184 56.0
Glyma.09G033800 Glycine max HOM05D007634 ORTHO05D004310 2.2e-15 87.0 260 48.1
Rhsim06G0057500 Rhododendron simsii HOM05D009814 ORTHO05D004310 2.2e-15 87.0 238 49.6
TWI36G1520 Tripterygium wilfordii HOM05D009814 ORTHO05D004310 3.7e-15 86.3 256 48.8
CiPaw.07G030700 Carya illinoinensis HOM05D013055 ORTHO05D014149 4.8e-15 85.9 185 58.4
PSO421G0073 Papaver somniferum HOM05D007634 ORTHO05D004310 6.3e-15 85.5 82 59.8
Sc17g0000300 Simmondsia chinensis HOM05D009814 ORTHO05D004310 8.2e-15 85.1 243 49.4
Actinidia13348 Actinidia chinensis HOM05D007634 ORTHO05D004310 1.1e-14 84.7 234 52.1
DCAR_002881 Daucus carota HOM05D009154 ORTHO05D004310 1.1e-14 84.7 246 48.8
Lj6g0019253 Lotus japonicus HOM05D007634 ORTHO05D004310 1.4e-14 84.3 253 52.2
CANSAT78G1884 Cannabis sativa HOM05D007634 ORTHO05D004310 1.8e-14 84.0 254 52.8
Ciclev10005745m.g Citrus clementina HOM05D007634 ORTHO05D004310 2.4e-14 83.6 252 49.6
Oeu038043.2 Olea europaea HOM05D016587 ORTHO05D019830 2.4e-14 83.6 230 51.7
VMungo0540G1967 Vigna mungo HOM05D007634 ORTHO05D004310 2.4e-14 83.6 248 48.0
COL.COLO4_34582 Corchorus olitorius HOM05D007634 ORTHO05D004310 3.1e-14 83.2 261 48.7
Lalb_Chr06g0166981 Lupinus albus HOM05D012173 ORTHO05D004310 3.1e-14 83.2 238 40.3
Manes.03G206900 Manihot esculenta HOM05D007634 ORTHO05D004310 3.1e-14 83.2 245 51.0
Glyma.15G138500 Glycine max HOM05D007634 ORTHO05D004310 4.1e-14 82.8 234 52.6
Rhsim11G0096900 Rhododendron simsii HOM05D013055 ORTHO05D012930 4.1e-14 82.8 187 53.5
Sed0022617 Sechium edule HOM05D009154 ORTHO05D004310 4.1e-14 82.8 221 38.0
Peaxi162Scf00228g00615 Petunia axillaris HOM05D012194 ORTHO05D015569 9.1e-14 81.6 252 44.0
AUR62011764 Chenopodium quinoa HOM05D009154 ORTHO05D004310 1.2e-13 81.3 245 32.2
Lju926C3T5 Lonicera japonica HOM05D009154 ORTHO05D004310 1.2e-13 81.3 182 41.2
Phvul.006G119700 Phaseolus vulgaris HOM05D007634 ORTHO05D004310 1.2e-13 81.3 251 51.8
Gorai.007G121100 Gossypium raimondii HOM05D009814 ORTHO05D004310 2.0e-13 80.5 216 52.3
Actinidia14250 Actinidia chinensis HOM05D003564 ORTHO05D004310 2.6e-13 80.1 225 52.0
Glyma.10G011100 Glycine max HOM05D012173 ORTHO05D004310 2.6e-13 80.1 234 49.6
Duzib212G0210 Durio zibethinus HOM05D007634 ORTHO05D004310 3.4e-13 79.7 246 51.2
Sabra14G0087500 Salix brachista HOM05D009154 ORTHO05D004310 3.4e-13 79.7 283 31.8
Hund16457 Selenicereus undatus HOM05D009154 ORTHO05D004310 3.4e-13 79.7 246 32.1
TWI18G0583 Tripterygium wilfordii HOM05D009814 ORTHO05D004310 4.5e-13 79.3 233 48.5
vmacro01576 Vaccinium macrocarpon HOM05D013055 ORTHO05D012930 7.7e-13 78.6 187 55.1
Cpa.g.sc9.28 Carica papaya HOM05D007634 ORTHO05D004310 1.0e-12 78.2 253 49.8
Glyma.02G010700 Glycine max HOM05D012173 ORTHO05D004310 1.3e-12 77.8 233 45.1
Eucgr.K03556 Eucalyptus grandis HOM05D009154 ORTHO05D004310 1.7e-12 77.4 228 42.1
Sopen01g023890 Solanum pennellii HOM05D000003 ORTHO05D015569 3.8e-12 76.3 244 42.2
Atru.chr4.3053 Acer truncatum HOM05D007634 ORTHO05D004310 5.0e-12 75.9 221 52.9
MELO3C015909.2 Cucumis melo HOM05D009154 ORTHO05D004310 8.5e-12 75.1 222 35.1
Lalb_Chr15g0089131 Lupinus albus HOM05D007634 ORTHO05D004310 3.2e-11 73.2 236 52.5
Medtr1g086670 Medicago truncatula HOM05D012173 ORTHO05D004310 5.5e-11 72.4 228 36.4
Ca_00964_v3 Cicer arietinum L. HOM05D007634 ORTHO05D004310 7.2e-11 72.0 248 50.0
Sabra02G0163200 Salix brachista HOM05D009814 ORTHO05D004310 9.4e-11 71.6 109 43.1
Actinidia25864 Actinidia chinensis HOM05D009814 ORTHO05D004310 1.2e-10 71.2 116 43.1
Ca_10269_v3 Cicer arietinum L. HOM05D012173 ORTHO05D004310 2.1e-10 70.5 234 51.7
Duzib151G0484 Durio zibethinus HOM05D007634 ORTHO05D004310 2.1e-10 70.5 87 50.6
Os05g0131900 Oryza sativa ssp. japonica HOM05D024805 ORTHO05D025983 2.1e-10 70.5 224 46.4
MD09G1285700 Malus domestica HOM05D018099 ORTHO05D020712 2.7e-10 70.1 236 41.9
Medtr2g033650 Medicago truncatula HOM05D007634 ORTHO05D004310 3.6e-10 69.7 249 49.8
Nitab4.5_0000647g0240 Nicotiana tabacum HOM05D012194 ORTHO05D015569 4.7e-10 69.3 246 48.4
Lalb_Chr13g0298591 Lupinus albus HOM05D007634 ORTHO05D004310 6.1e-10 68.9 248 46.8
Solyc01g058320.4 Solanum lycopersicum HOM05D012194 ORTHO05D015569 6.1e-10 68.9 245 42.9
Potri.002G192700 Populus trichocarpa HOM05D009814 ORTHO05D004310 7.9e-10 68.6 109 44.0
TPR.G31752 Trifolium pratense HOM05D012173 ORTHO05D004310 7.9e-10 68.6 232 51.7
arahy.Tifrunner.gnm1.ann1.E7T2Z7 Arachis hypogaea HOM05D007634 ORTHO05D004310 1.0e-09 68.2 253 48.6
arahy.Tifrunner.gnm1.ann1.X0JG6N Arachis hypogaea HOM05D007634 ORTHO05D004310 1.0e-09 68.2 253 48.6
CiPaw.08G154700 Carya illinoinensis HOM05D013055 ORTHO05D014149 1.0e-09 68.2 185 53.5
MD17G1278300 Malus domestica HOM05D018099 ORTHO05D020712 1.0e-09 68.2 183 54.6
Psat1g162160 Pisum sativum HOM05D007634 ORTHO05D004310 1.0e-09 68.2 246 49.2
CsaV3_7G030120 Cucumis sativus L. HOM05D009154 ORTHO05D004310 1.8e-09 67.4 224 42.0
Hund03138 Selenicereus undatus HOM05D007634 ORTHO05D004310 1.8e-09 67.4 260 47.7
Lalb_Chr02g0146911 Lupinus albus HOM05D012173 ORTHO05D004310 2.3e-09 67.0 234 38.5
Gohir.D09G241900 Gossypium hirsutum HOM05D007634 ORTHO05D004310 3.0e-09 66.6 257 47.1
Solyc05g053360.3 Solanum lycopersicum HOM05D012194 ORTHO05D015569 3.0e-09 66.6 245 45.3
TPR.G33868 Trifolium pratense HOM05D007634 ORTHO05D004310 3.0e-09 66.6 241 34.9
DCAR_023359 Daucus carota HOM05D012194 ORTHO05D015569 3.9e-09 66.2 212 45.3
Lj5g0021212 Lotus japonicus HOM05D012173 ORTHO05D004310 5.1e-09 65.9 219 52.5
AUR62024610 Chenopodium quinoa HOM05D009154 ORTHO05D004310 6.7e-09 65.5 250 30.4
Thecc.04G304600 Theobroma cacao HOM05D007634 ORTHO05D004310 6.7e-09 65.5 251 46.2
PGR044G0657 Punica granatum HOM05D009154 ORTHO05D004310 8.8e-09 65.1 213 34.3
Psat6g160360 Pisum sativum HOM05D012173 ORTHO05D004310 1.1e-08 64.7 226 37.6
Sed0019931 Sechium edule HOM05D009154 ORTHO05D004310 1.5e-08 64.3 207 30.4
Lalb_Chr07g0181961 Lupinus albus HOM05D007634 ORTHO05D004310 2.0e-08 63.9 228 48.7
ClCG09G004940 Citrullus lanatus HOM05D009154 ORTHO05D004310 2.6e-08 63.5 233 31.8
Nitab4.5_0004165g0050 Nicotiana tabacum HOM05D012194 ORTHO05D015569 2.6e-08 63.5 246 47.6
Sed0013714 Sechium edule HOM05D009154 ORTHO05D004310 7.4e-08 62.0 215 30.7
Rhsim02G0002500 Rhododendron simsii HOM05D032642 ORTHO05D004310 1.3e-07 61.2 187 54.5
Sopen05g031870 Solanum pennellii HOM05D012194 ORTHO05D015569 1.3e-07 61.2 245 45.7
CsaV3_3G026560 Cucumis sativus L. HOM05D009154 ORTHO05D004310 2.2e-07 60.5 223 29.1
Gohir.A09G241100 Gossypium hirsutum HOM05D007634 ORTHO05D004310 2.2e-07 60.5 253 47.4
Gorai.002G031000 Gossypium raimondii HOM05D007634 ORTHO05D004310 2.2e-07 60.5 253 45.8
Hma1.2p1_0052F.1_g030700 Hydrangea macrophylla HOM05D013055 ORTHO05D012930 2.8e-07 60.1 185 56.2
SalBow3G0760 Salvia bowleyana HOM05D020384 ORTHO05D012930 2.8e-07 60.1 106 41.5
DCAR_005743 Daucus carota HOM05D009154 ORTHO05D004310 4.8e-07 59.3 116 36.2
Potri.014G118000 Populus trichocarpa HOM05D009814 ORTHO05D004310 4.8e-07 59.3 187 56.1
QL03p015395 Quercus lobata HOM05D013055 ORTHO05D014149 4.8e-07 59.3 184 57.1
MELO3C012929.2 Cucumis melo HOM05D009154 ORTHO05D004310 6.3e-07 58.9 223 29.1
Gohir.D01G023562 Gossypium hirsutum HOM05D007634 ORTHO05D004310 6.3e-07 58.9 253 45.1
VMungo0720G2010 Vigna mungo HOM05D012173 ORTHO05D004310 6.3e-07 58.9 234 34.6
Lalb_Chr20g0120751 Lupinus albus HOM05D007634 ORTHO05D004310 8.2e-07 58.5 237 48.5
PGSC0003DMG400003491 Solanum tuberosum HOM05D012194 ORTHO05D015569 8.2e-07 58.5 230 42.2
MSTRG.21705 Avicennia marina HOM05D016587 ORTHO05D019830 1.1e-06 58.2 113 36.3
EL10Ac3g05537 Beta vulgaris HOM05D007634 ORTHO05D004310 1.4e-06 57.8 283 39.9
CDE05G3151 Ceratophyllum demersum HOM05D000081 ORTHO05D000036 1.4e-06 57.8 203 42.4
Oeu038954.2 Olea europaea HOM05D016587 ORTHO05D004310 1.4e-06 57.8 239 39.3
AUR62016237 Chenopodium quinoa HOM05D007634 ORTHO05D004310 1.8e-06 57.4 239 48.1
HanXRQChr04g0108411 Helianthus annuus HOM05D009154 ORTHO05D004310 1.8e-06 57.4 219 29.2
ECA236G0385 Erigeron canadensis HOM05D009154 ORTHO05D004310 2.4e-06 57.0 220 30.0
Hma1.2p1_3252F.1_g334510 Hydrangea macrophylla HOM05D009814 ORTHO05D004310 2.4e-06 57.0 80 43.8
AUR62039253 Chenopodium quinoa HOM05D007634 ORTHO05D004310 3.1e-06 56.6 252 45.2
Phvul.007G212700 Phaseolus vulgaris HOM05D012173 ORTHO05D004310 3.1e-06 56.6 241 48.5
Psat4g021760 Pisum sativum HOM05D007634 ORTHO05D004310 4.1e-06 56.2 234 44.0
vmacro15171 Vaccinium macrocarpon HOM05D018149 ORTHO05D020732 4.1e-06 56.2 104 38.5
Ciclev10002618m.g Citrus clementina HOM05D013055 ORTHO05D014149 5.3e-06 55.8 185 31.9
Gorai.006G265400 Gossypium raimondii HOM05D007634 ORTHO05D004310 5.3e-06 55.8 235 47.2
Ah.11g049040 Amaranthus hybridus HOM05D009154 ORTHO05D004310 7.0e-06 55.5 250 28.0
Cc02_g35210 Coffea canephora HOM05D015885 ORTHO05D012930 9.1e-06 55.1 188 40.4
Phvul.003G116800 Phaseolus vulgaris HOM05D007634 ORTHO05D004310 9.1e-06 55.1 255 46.3
TPR.G25427 Trifolium pratense HOM05D007634 ORTHO05D004310 9.1e-06 55.1 243 37.4


User provided reference genes

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