Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 1.4e-202 709.5 387 100.0
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 6.9e-178 627.5 387 86.8
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 2.3e-173 612.5 387 85.8
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 3.9e-173 611.7 387 84.8
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 3.3e-172 608.6 384 85.4
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 3.7e-171 605.1 386 83.7
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 2.4e-170 602.4 365 88.8
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 8.5e-168 594.0 386 81.3
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 1.4e-167 593.2 387 83.5
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 5.5e-167 591.3 384 84.1
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 4.7e-166 588.2 389 83.5
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 7.9e-166 587.4 387 84.0
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 3.0e-165 585.5 387 82.9
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 3.9e-165 585.1 387 81.4
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 2.0e-164 582.8 368 86.1
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 3.3e-164 582.0 384 81.0
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 3.7e-163 578.6 386 79.8
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 8.2e-163 577.4 386 82.4
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 1.8e-162 576.2 390 80.5
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 1.8e-162 576.2 386 81.1
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 3.1e-162 575.5 386 81.3
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 9.1e-162 573.9 384 81.5
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 1.2e-161 573.5 381 81.1
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 1.5e-161 573.2 386 79.5
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 4.5e-161 571.6 387 81.9
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 1.0e-160 570.5 386 80.3
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 2.2e-160 569.3 387 81.7
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 5.0e-160 568.2 386 79.8
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 6.5e-160 567.8 387 81.4
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 1.1e-159 567.0 366 83.9
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 1.9e-159 566.2 365 82.5
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 2.5e-159 565.8 383 81.5
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 3.2e-159 565.5 373 82.6
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 5.5e-159 564.7 390 79.2
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 9.4e-159 563.9 382 82.2
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 1.6e-158 563.1 389 80.7
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 4.7e-158 561.6 384 80.5
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 4.7e-158 561.6 362 83.1
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 1.4e-157 560.1 366 83.9
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 1.4e-157 560.1 395 79.2
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.3e-157 559.3 387 79.6
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 2.3e-157 559.3 387 78.8
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 3.0e-157 558.9 384 79.9
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 3.0e-157 558.9 367 83.4
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 3.0e-157 558.9 363 83.2
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 3.0e-157 558.9 494 65.4
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 8.8e-157 557.4 366 83.6
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 1.5e-156 556.6 387 79.3
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 1.5e-156 556.6 387 79.3
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 4.4e-156 555.1 384 78.4
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 2.4e-154 549.3 366 82.5
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 1.2e-153 547.0 388 77.6
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 2.2e-152 542.7 386 77.7
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 1.5e-151 540.0 377 78.2
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 1.5e-151 540.0 389 77.6
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 1.5e-151 540.0 389 77.6
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 2.5e-151 539.3 350 84.6
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 2.5e-151 539.3 368 79.9
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 7.2e-151 537.7 384 78.9
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 1.2e-150 537.0 384 79.4
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 3.6e-150 535.4 374 78.9
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 4.0e-149 531.9 387 76.5
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 5.2e-149 531.6 357 80.1
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 3.3e-148 528.9 390 76.9
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 4.4e-148 528.5 387 75.7
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 7.5e-148 527.7 382 77.2
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 2.8e-147 525.8 350 80.6
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 3.7e-147 525.4 386 76.2
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 1.1e-146 523.9 376 76.1
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 1.4e-146 523.5 351 82.1
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 1.8e-146 523.1 380 77.6
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 4.1e-146 521.9 366 78.7
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 7.0e-146 521.2 387 75.5
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 1.2e-145 520.4 365 78.1
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 5.9e-145 518.1 373 76.9
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 5.9e-145 518.1 387 74.9
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 1.0e-144 517.3 373 76.9
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 1.0e-144 517.3 368 75.5
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 2.2e-144 516.2 320 88.8
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 2.7e-142 509.2 352 79.0
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 3.6e-142 508.8 354 80.5
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 3.6e-142 508.8 370 74.9
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 4.7e-142 508.4 368 77.2
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 4.7e-142 508.4 420 70.7
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 3.0e-141 505.8 361 77.6
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 6.8e-141 504.6 343 80.2
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 8.8e-141 504.2 342 80.4
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 8.8e-141 504.2 351 79.5
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 2.8e-139 499.2 426 68.1
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 2.8e-139 499.2 365 76.2
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 4.8e-139 498.4 367 76.6
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 7.0e-138 494.6 368 74.5
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 2.0e-137 493.0 367 74.1
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 5.9e-137 491.5 386 69.9
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 1.1e-135 487.3 355 77.5
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 1.9e-135 486.5 373 74.5
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 2.5e-135 486.1 343 79.9
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 4.7e-134 481.9 366 73.8
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.0e-133 480.7 360 75.8
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 3.0e-133 479.2 368 73.6
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 6.8e-133 478.0 358 74.3
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 4.4e-132 475.3 377 69.0
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 2.8e-131 472.6 353 74.5
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 6.3e-131 471.5 344 75.6
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 1.1e-130 470.7 366 73.0
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 5.4e-130 468.4 366 72.7
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 7.0e-130 468.0 384 71.4
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 2.3e-128 463.0 362 71.8
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 5.6e-127 458.4 366 72.4
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 5.6e-127 458.4 353 71.7
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 1.2e-126 457.2 369 72.1
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 1.2e-126 457.2 366 71.0
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 1.2e-126 457.2 369 72.1
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 2.1e-126 456.4 361 72.6
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 4.7e-126 455.3 344 74.1
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 4.9e-123 445.3 294 82.7
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 6.4e-123 444.9 292 87.3
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 8.3e-123 444.5 362 65.5
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 3.9e-120 435.6 363 70.5
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 3.3e-119 432.6 330 72.7
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 9.5e-119 431.0 389 66.1
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 2.8e-118 429.5 379 68.9
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.8e-117 426.8 358 64.0
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.6e-116 422.9 286 81.1
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 3.4e-116 422.5 268 84.7
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.7e-112 410.2 359 63.5
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 1.2e-108 397.5 371 60.4
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.7e-107 393.7 316 74.4
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 3.7e-107 392.5 329 65.0
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.6e-105 387.1 291 70.1
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 7.3e-103 378.3 370 56.8
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 3.6e-102 375.9 267 76.8
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 8.1e-102 374.8 364 57.4
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 3.1e-101 372.9 270 77.4
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 1.5e-100 370.5 221 91.0
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 3.1e-93 346.3 367 55.0
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 9.9e-92 341.3 286 67.5
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 3.9e-88 329.3 224 83.0
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 5.3e-69 265.8 182 80.2
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 5.3e-53 212.6 125 91.2
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 8.8e-48 195.3 139 77.0
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 9.7e-47 191.8 130 81.5
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 9.1e-45 185.3 150 72.7
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 2.5e-42 177.2 142 67.6
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 2.7e-33 147.1 97 80.4
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 4.7e-33 146.4 105 74.3
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 7.7e-28 129.0 90 71.1
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 1.7e-27 127.9 81 76.5
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 2.5e-26 124.0 81 75.3
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 1.2e-25 121.7 81 84.0
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 7.0e-21 105.9 120 47.5
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 2.0e-20 104.4 130 51.5
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 1.9e-18 97.8 81 69.1
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 6.1e-17 92.8 93 57.0
COL.COLO4_28287 Corchorus olitorius HOM05D004327 ORTHO05D005032 1.2e-15 88.6 56 89.3
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 1.5e-15 88.2 58 87.9
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.2e-13 80.5 97 52.6
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 1.2e-12 78.6 134 44.8
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 7.8e-12 75.9 42 88.1
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 1.0e-11 75.5 74 51.4
BolC9t54329H Brassica oleracea HOM05D004327 ORTHO05D005032 1.5e-10 71.6 57 73.7
BcaC03g14154 Brassica carinata HOM05D004327 ORTHO05D032179 9.5e-10 68.9 78 50.0
PRCOL_00002192 Prasinoderma coloniale HOM05D004327 ORTHO05D005032 3.6e-09 67.0 249 28.1
CiPaw.16G058000 Carya illinoinensis HOM05D002292 ORTHO05D003256 7.5e-07 59.3 38 89.5


User provided reference genes

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