Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 4.8e-144 514.6 284 100.0
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 4.8e-144 514.6 284 100.0
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 3.8e-101 372.1 272 79.8
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 3.9e-93 345.5 272 76.1
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 1.1e-82 310.8 277 69.3
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.7e-75 285.4 275 65.1
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 3.1e-74 282.7 280 66.1
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 5.8e-73 278.5 277 63.5
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 6.0e-70 268.5 275 63.6
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 7.3e-68 261.5 280 63.2
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.1e-67 260.0 273 62.6
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.2e-67 258.5 273 63.0
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 3.1e-66 256.1 280 62.9
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 2.6e-65 253.1 273 60.4
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 5.8e-65 251.9 272 59.6
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 6.4e-64 248.4 275 61.5
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 2.4e-63 246.5 275 58.5
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 2.4e-63 246.5 275 58.5
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 7.1e-63 245.0 258 57.8
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 9.3e-63 244.6 283 58.0
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 1.2e-62 244.2 258 58.5
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.6e-62 243.8 275 60.7
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 3.5e-62 242.7 276 59.8
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 3.9e-61 239.2 272 59.6
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 4.3e-60 235.7 272 58.1
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 1.6e-59 233.8 281 56.9
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 2.8e-59 233.0 276 58.7
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 3.6e-59 232.6 268 57.1
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 8.1e-59 231.5 273 57.9
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 2.4e-58 229.9 286 56.6
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 7.6e-57 224.9 195 68.7
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 9.9e-57 224.6 273 56.4
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 1.7e-56 223.8 279 54.5
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 2.9e-56 223.0 272 54.8
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.9e-56 223.0 273 54.9
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 4.9e-56 222.2 273 56.0
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 6.4e-56 221.9 275 57.5
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 1.6e-54 217.2 284 54.6
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 2.7e-54 216.5 276 52.9
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.3e-53 214.2 282 55.7
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 1.7e-53 213.8 272 54.4
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 2.3e-53 213.4 278 54.3
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 2.3e-53 213.4 278 54.3
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 3.0e-53 213.0 282 53.5
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 6.6e-53 211.8 275 52.4
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 8.7e-53 211.5 278 54.0
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.5e-52 210.7 278 53.6
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 7.4e-52 208.4 274 55.1
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 7.4e-52 208.4 276 52.9
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 9.6e-52 208.0 284 51.1
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.6e-51 207.2 276 52.2
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.1e-51 206.8 285 50.9
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 3.6e-51 206.1 272 54.4
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 4.8e-51 205.7 276 51.4
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 4.8e-51 205.7 275 54.5
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 1.1e-50 204.5 272 53.7
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 1.4e-50 204.1 270 56.7
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.4e-50 204.1 275 53.1
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 2.6e-49 199.9 272 52.2
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 9.9e-49 198.0 282 51.4
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 1.3e-48 197.6 270 54.1
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 1.3e-48 197.6 272 52.9
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 1.4e-47 194.1 281 51.2
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 1.9e-47 193.7 271 49.1
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-46 191.0 203 61.6
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-46 191.0 203 61.6
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 1.6e-46 190.7 271 48.7
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 2.7e-46 189.9 274 53.3
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.7e-46 189.9 298 48.3
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 1.8e-45 187.2 275 52.0
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 5.1e-45 185.7 271 51.7
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 6.7e-45 185.3 269 49.8
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 1.9e-44 183.7 283 49.5
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 7.4e-44 181.8 271 49.4
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 2.1e-43 180.3 281 48.0
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 2.1e-43 180.3 269 50.9
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 3.7e-43 179.5 285 48.8
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.2e-43 178.7 215 56.3
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 8.1e-43 178.3 277 48.0
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 8.1e-43 178.3 274 47.8
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.1e-42 177.9 257 51.8
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.4e-42 177.6 271 48.0
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 4.0e-42 176.0 210 57.6
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.2e-41 174.5 286 47.6
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 1.5e-41 174.1 203 57.1
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 3.4e-41 172.9 266 50.0
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 3.4e-41 172.9 272 47.8
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 1.0e-40 171.4 269 49.1
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 1.3e-40 171.0 279 44.8
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.2e-40 170.2 273 48.4
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 2.9e-40 169.9 189 56.6
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 4.9e-40 169.1 268 49.3
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 4.9e-40 169.1 268 48.1
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 4.9e-40 169.1 268 48.1
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 4.9e-40 169.1 268 49.3
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 4.9e-40 169.1 225 50.7
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 6.5e-40 168.7 239 49.8
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 6.5e-40 168.7 268 48.1
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 6.5e-40 168.7 268 48.1
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 8.4e-40 168.3 270 46.7
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 1.1e-39 167.9 268 47.4
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 1.4e-39 167.5 274 47.8
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 1.4e-39 167.5 276 49.3
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 2.5e-39 166.8 268 49.3
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 3.2e-39 166.4 273 48.0
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 3.2e-39 166.4 271 47.2
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 3.2e-39 166.4 274 46.7
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 3.2e-39 166.4 303 44.6
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.1e-38 163.7 267 46.1
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 2.3e-37 160.2 273 46.5
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 3.0e-37 159.8 272 45.6
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 5.1e-37 159.1 285 47.0
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 5.1e-37 159.1 279 46.2
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.5e-36 157.5 280 44.6
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 4.3e-36 156.0 268 45.9
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 9.6e-36 154.8 275 43.6
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.9e-34 148.7 212 50.9
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-33 147.9 212 50.5
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 2.0e-33 147.1 276 44.2
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.4e-33 146.4 212 50.0
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.5e-33 146.0 212 50.0
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.3e-32 144.4 212 49.5
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.9e-32 143.3 212 49.5
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 5.0e-32 142.5 182 51.1
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 1.1e-31 141.4 250 46.0
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 4.2e-31 139.4 276 43.8
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.7e-30 136.7 228 44.7
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 2.3e-29 133.7 255 45.9
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 8.7e-29 131.7 286 41.6
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 2.5e-28 130.2 286 41.3
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 3.3e-28 129.8 293 41.6
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 3.1e-26 123.2 106 68.9
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.5e-25 119.4 212 44.3
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 2.2e-24 117.1 206 42.2
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 6.5e-24 115.5 186 44.6
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 1.1e-23 114.8 215 41.9
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 4.2e-23 112.8 236 39.8
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 5.5e-23 112.5 238 41.6
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.2e-22 111.3 201 45.8
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 3.8e-16 89.7 73 71.2
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 1.1e-15 88.2 187 38.5
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 4.2e-15 86.3 101 57.4
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 1.3e-11 74.7 73 63.0
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.6e-09 67.8 108 49.1
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 1.0e-08 65.1 84 51.2
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 2.5e-07 60.5 58 63.8
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 2.5e-07 60.5 173 32.9
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 9.4e-07 58.5 46 73.9


User provided reference genes

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