Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 2.3e-167 592.4 357 100.0
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 3.5e-35 153.3 304 42.4
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 4.6e-35 152.9 247 44.9
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 2.9e-29 133.7 334 38.3
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 1.9e-28 131.0 265 39.2
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 1.9e-28 131.0 269 44.6
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 1.9e-28 131.0 256 43.4
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 3.2e-28 130.2 237 41.4
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 3.2e-28 130.2 272 40.1
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 4.2e-28 129.8 423 33.3
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 9.3e-28 128.6 246 42.7
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 1.2e-27 128.3 231 43.3
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 3.5e-27 126.7 231 42.9
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 4.6e-27 126.3 231 46.3
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 4.6e-27 126.3 250 40.0
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.0e-26 125.2 324 38.3
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 1.0e-26 125.2 371 37.7
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 6.7e-26 122.5 231 41.6
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 8.7e-26 122.1 371 37.2
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 1.1e-25 121.7 319 36.1
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.1e-25 121.7 319 36.1
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.1e-25 121.7 323 37.8
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 1.9e-25 120.9 203 45.8
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.5e-25 120.6 415 35.2
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.5e-25 120.6 269 41.6
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.5e-25 120.6 319 36.1
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 2.5e-25 120.6 283 37.8
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 3.3e-25 120.2 463 33.9
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 3.3e-25 120.2 218 42.7
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 5.6e-25 119.4 237 36.7
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 5.6e-25 119.4 268 38.4
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.6e-24 117.9 325 36.6
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 2.8e-24 117.1 235 41.7
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 6.2e-24 115.9 250 38.4
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 1.8e-23 114.4 314 40.1
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.0e-23 113.2 325 39.1
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.0e-23 113.2 322 40.4
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 9.0e-23 112.1 306 37.6
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 9.0e-23 112.1 306 37.6
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 9.0e-23 112.1 190 45.8
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.2e-22 111.7 355 34.6
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 3.4e-22 110.2 222 38.7
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 4.5e-22 109.8 314 36.9
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 5.8e-22 109.4 236 39.4
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 1.0e-21 108.6 434 37.1
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 1.7e-21 107.8 265 36.2
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 2.2e-21 107.5 235 37.9
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 2.2e-21 107.5 197 41.1
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 3.8e-21 106.7 364 34.1
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 3.8e-21 106.7 274 37.2
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 4.9e-21 106.3 212 40.6
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 8.4e-21 105.5 235 39.6
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 8.4e-21 105.5 299 35.5
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 1.1e-20 105.1 202 40.1
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.4e-20 104.8 317 36.6
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.4e-20 104.8 232 38.8
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 2.5e-20 104.0 215 40.5
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 3.2e-20 103.6 317 37.2
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 4.2e-20 103.2 434 32.0
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 4.2e-20 103.2 291 36.4
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 2.7e-19 100.5 198 40.4
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 4.6e-19 99.8 239 37.2
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 6.0e-19 99.4 186 39.2
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 2.3e-18 97.4 269 38.3
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 2.3e-18 97.4 391 35.0
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 2.3e-18 97.4 370 32.7
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 3.0e-18 97.1 428 37.6
GSVIVG01027401001 Vitis vinifera HOM05D004242 ORTHO05D004349 5.1e-18 96.3 231 33.8
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 1.1e-17 95.1 316 37.0
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 1.9e-17 94.4 219 39.3
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 2.5e-17 94.0 389 33.4
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 3.3e-17 93.6 425 36.0
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 4.3e-17 93.2 388 31.4
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 5.7e-17 92.8 413 31.0
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 7.4e-17 92.4 292 36.6
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 7.4e-17 92.4 265 35.1
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 2.8e-16 90.5 408 38.7
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 3.7e-16 90.1 264 32.2
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 6.3e-16 89.4 406 30.5
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 6.3e-16 89.4 282 35.8
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 1.4e-15 88.2 288 33.0
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.8e-15 87.8 251 33.1
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 2.4e-15 87.4 238 38.2
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 4.1e-15 86.7 240 36.2
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 5.3e-15 86.3 311 33.1
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 9.0e-15 85.5 244 38.1
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 1.2e-14 85.1 357 33.6
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 2.0e-14 84.3 277 37.9
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 5.9e-14 82.8 244 34.8
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.3e-13 81.6 326 31.6
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 1.7e-13 81.3 133 45.1
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 2.2e-13 80.9 120 44.2
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 2.2e-13 80.9 301 33.6
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 2.9e-13 80.5 213 32.9
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 3.8e-13 80.1 388 30.4
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 5.0e-13 79.7 243 33.7
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 6.5e-13 79.3 239 37.7
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 8.5e-13 79.0 134 47.8
VMungo0331G0257 Vigna mungo HOM05D004242 ORTHO05D004349 8.5e-13 79.0 261 33.3
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.9e-12 77.8 121 42.1
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 3.2e-12 77.0 189 32.3
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 4.2e-12 76.6 238 37.4
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 4.2e-12 76.6 238 37.4
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 4.2e-12 76.6 223 38.6
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 4.2e-12 76.6 313 29.7
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 9.3e-12 75.5 273 32.2
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 1.2e-11 75.1 486 31.5
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 1.2e-11 75.1 221 37.6
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 1.2e-11 75.1 223 38.1
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 1.2e-11 75.1 229 35.8
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 1.6e-11 74.7 223 38.1
Dinv34239 Davidia involucrata HOM05D004242 ORTHO05D004349 1.6e-11 74.7 399 30.1
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 1.6e-11 74.7 134 35.8
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 2.7e-11 73.9 426 32.9
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 3.6e-11 73.6 169 33.1
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 3.6e-11 73.6 243 36.2
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 4.6e-11 73.2 223 35.9
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 6.1e-11 72.8 221 37.1
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 1.3e-10 71.6 224 37.5
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 1.8e-10 71.2 200 30.0
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 1.8e-10 71.2 200 30.0
Glyma.07G052632 Glycine max HOM05D004242 ORTHO05D004349 1.8e-10 71.2 279 29.4
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 2.3e-10 70.9 222 30.6
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 3.0e-10 70.5 286 31.8
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 5.1e-10 69.7 213 38.0
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 8.8e-10 68.9 155 32.9
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 8.8e-10 68.9 221 29.0
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 1.1e-09 68.6 213 31.0
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 4.3e-09 66.6 421 32.8
ECA236G3302 Erigeron canadensis HOM05D004242 ORTHO05D004349 5.7e-09 66.2 232 38.4
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 5.7e-09 66.2 265 30.2
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 9.7e-09 65.5 240 32.9
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 9.7e-09 65.5 125 38.4
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 1.3e-08 65.1 182 29.1
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.3e-08 65.1 128 35.2
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 2.2e-08 64.3 113 36.3
Sc01g0002380 Simmondsia chinensis HOM05D004242 ORTHO05D004349 2.2e-08 64.3 246 28.9
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.8e-08 63.9 128 34.4
Sed0025990 Sechium edule HOM05D004242 ORTHO05D004349 8.2e-08 62.4 257 30.0
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 1.4e-07 61.6 320 30.0
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 4.1e-07 60.1 184 25.5
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 5.3e-07 59.7 171 31.0
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 5.3e-07 59.7 147 30.6
ECA240G3602 Erigeron canadensis HOM05D004242 ORTHO05D004349 5.3e-07 59.7 266 30.1
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 5.3e-07 59.7 118 31.4
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 5.3e-07 59.7 115 34.8
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 6.9e-07 59.3 171 29.2
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 9.1e-07 58.9 109 35.8
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 1.2e-06 58.5 365 27.7
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.2e-06 58.5 133 32.3
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 1.5e-06 58.2 201 29.9
Lj8P558T18 Lonicera japonica HOM05D012621 ORTHO05D004349 1.5e-06 58.2 126 32.5
Lalb_Chr10g0100731 Lupinus albus HOM05D004242 ORTHO05D004349 1.5e-06 58.2 200 32.5
Glyma.16G021500 Glycine max HOM05D004242 ORTHO05D004349 2.0e-06 57.8 274 27.0
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 2.6e-06 57.4 132 27.3
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 2.6e-06 57.4 113 42.5
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 3.4e-06 57.0 159 32.7
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 4.5e-06 56.6 148 31.8
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 4.5e-06 56.6 139 29.5
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 4.5e-06 56.6 228 26.8
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 4.5e-06 56.6 228 26.8
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 4.5e-06 56.6 147 29.9
CsaV3_3G007790 Cucumis sativus L. HOM05D004242 ORTHO05D004349 4.5e-06 56.6 233 27.9
Lj8P558T21 Lonicera japonica HOM05D012621 ORTHO05D004349 4.5e-06 56.6 284 27.5
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 4.5e-06 56.6 118 33.9
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 5.9e-06 56.2 113 35.4
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 5.9e-06 56.2 121 32.2
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 5.9e-06 56.2 213 29.6


User provided reference genes

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