Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.7e-120 436.0 224 100.0
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 9.5e-79 297.4 287 62.7
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 1.2e-52 210.7 154 70.8
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 2.0e-52 209.9 172 67.4
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 4.2e-50 202.2 170 62.9
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 7.1e-50 201.4 154 68.8
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.2e-49 200.7 170 62.9
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 1.6e-49 200.3 154 67.5
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.3e-47 192.6 175 61.1
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 4.8e-46 188.7 154 66.9
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 4.8e-46 188.7 155 67.1
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 6.2e-46 188.3 152 67.8
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 1.1e-45 187.6 155 62.6
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.8e-45 186.8 179 59.2
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 2.4e-45 186.4 155 61.9
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 3.1e-45 186.0 172 61.6
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 4.0e-45 185.7 172 61.6
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 4.0e-45 185.7 155 62.6
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 6.9e-45 184.9 154 61.7
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 6.9e-45 184.9 172 61.6
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 9.0e-45 184.5 155 63.9
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 1.5e-44 183.7 159 61.6
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.5e-44 183.7 154 64.3
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.5e-44 183.7 154 64.3
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.0e-44 183.3 181 58.0
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 2.6e-44 183.0 148 62.8
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 3.4e-44 182.6 154 61.7
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 3.4e-44 182.6 161 60.2
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 5.8e-44 181.8 164 57.9
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 1.3e-43 180.6 157 61.1
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.7e-43 180.3 152 61.8
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 2.2e-43 179.9 164 57.3
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 3.8e-43 179.1 178 54.5
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 6.4e-43 178.3 155 58.7
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 8.4e-43 177.9 181 55.8
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 1.4e-42 177.2 172 57.0
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 1.9e-42 176.8 164 59.1
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.4e-42 176.4 151 61.6
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 3.2e-42 176.0 146 61.0
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 4.2e-42 175.6 174 58.0
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 4.2e-42 175.6 162 58.6
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 4.2e-42 175.6 161 57.8
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 7.1e-42 174.9 185 54.1
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 9.3e-42 174.5 171 56.1
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 9.3e-42 174.5 172 54.1
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.2e-41 174.1 172 57.6
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 1.2e-41 174.1 171 55.6
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 1.2e-41 174.1 147 61.9
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 2.7e-41 172.9 172 53.5
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 3.5e-41 172.6 164 55.5
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 6.0e-41 171.8 178 54.5
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 1.3e-40 170.6 154 56.5
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 1.7e-40 170.2 146 60.3
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.7e-40 170.2 172 52.9
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 3.0e-40 169.5 189 51.9
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 3.0e-40 169.5 189 51.9
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 3.0e-40 169.5 184 53.3
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 3.9e-40 169.1 154 57.1
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 8.7e-40 167.9 159 57.9
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 1.1e-39 167.5 181 54.7
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 1.1e-39 167.5 147 57.8
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 1.9e-39 166.8 189 50.8
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 1.9e-39 166.8 152 58.6
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 1.9e-39 166.8 159 56.6
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 1.9e-39 166.8 161 55.3
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 2.5e-39 166.4 168 54.8
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 3.3e-39 166.0 159 57.9
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 3.3e-39 166.0 163 57.7
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 5.6e-39 165.2 149 57.0
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 5.6e-39 165.2 151 59.6
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 9.6e-39 164.5 159 56.0
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 9.6e-39 164.5 167 55.1
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 9.6e-39 164.5 148 59.5
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 1.3e-38 164.1 167 54.5
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 1.3e-38 164.1 182 50.5
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 1.3e-38 164.1 152 56.6
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 3.6e-38 162.5 182 50.0
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 3.6e-38 162.5 159 55.3
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 1.1e-37 161.0 180 50.0
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.1e-37 161.0 149 56.4
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 2.4e-37 159.8 162 54.3
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 2.4e-37 159.8 150 58.0
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 2.4e-37 159.8 165 50.9
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 4.0e-37 159.1 140 60.7
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 4.0e-37 159.1 163 54.0
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 5.3e-37 158.7 102 81.4
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 2.0e-36 156.8 150 54.0
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.6e-36 156.4 140 57.9
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 2.6e-36 156.4 169 56.8
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 7.6e-36 154.8 151 55.6
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 6.4e-35 151.8 169 49.7
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 1.9e-34 150.2 169 47.9
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 3.2e-34 149.4 122 64.8
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 5.5e-34 148.7 122 63.9
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 1.2e-33 147.5 158 50.0
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.1e-33 146.7 131 64.1
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 2.1e-33 146.7 165 47.9
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 4.6e-33 145.6 169 46.7
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 3.9e-32 142.5 197 45.2
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 5.1e-32 142.1 146 53.4
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 6.7e-32 141.7 155 49.7
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 3.3e-31 139.4 151 49.7
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 3.3e-31 139.4 150 50.0
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 5.6e-31 138.7 158 48.1
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 5.6e-31 138.7 137 53.3
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 7.4e-31 138.3 157 47.8
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 1.3e-30 137.5 148 47.3
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 6.2e-30 135.2 169 43.8
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 6.2e-30 135.2 169 50.3
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 2.4e-29 133.3 168 45.2
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 1.5e-28 130.6 124 56.5
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 4.5e-28 129.0 171 46.2
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 7.6e-28 128.3 169 46.2
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 4.9e-27 125.6 170 44.1
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 6.5e-27 125.2 170 41.2
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 1.5e-23 114.0 169 42.6
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 2.5e-23 113.2 160 41.9
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 4.8e-22 109.0 79 74.7
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 5.3e-21 105.5 154 42.2
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 7.2e-18 95.1 78 66.7
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 3.6e-17 92.8 187 35.8
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 3.9e-16 89.4 154 33.1
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 5.1e-16 89.0 189 35.4
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 6.9e-13 78.6 149 35.6
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.9e-10 70.5 64 64.1
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 5.1e-08 62.4 123 30.1
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 2.2e-06 57.0 158 27.2
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 6.3e-06 55.5 87 35.6


User provided reference genes

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