Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 7.1e-151 537.3 293 100.0
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.1e-106 389.0 292 74.7
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 2.9e-88 329.3 289 68.2
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 8.9e-85 317.8 285 68.8
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.4e-82 310.5 294 61.6
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.9e-79 300.1 292 62.3
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 9.5e-79 297.7 289 64.0
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 2.1e-78 296.6 299 62.5
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.8e-77 293.5 279 64.2
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 3.1e-77 292.7 288 60.1
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 5.2e-77 292.0 287 65.5
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 3.4e-76 289.3 310 54.8
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 1.3e-75 287.3 246 66.7
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 1.2e-73 280.8 288 59.4
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 7.8e-73 278.1 287 57.5
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 1.0e-72 277.7 232 65.9
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 1.3e-72 277.3 304 62.5
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 3.0e-72 276.2 243 63.8
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 3.9e-72 275.8 287 61.0
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 6.6e-72 275.0 238 65.5
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 8.6e-72 274.6 302 62.6
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 8.6e-72 274.6 307 54.7
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 2.5e-71 273.1 304 62.2
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 2.5e-71 273.1 304 62.2
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 3.3e-71 272.7 307 54.4
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 5.6e-71 271.9 302 62.3
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 1.2e-70 270.8 310 59.0
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 2.8e-70 269.6 301 58.8
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 2.8e-70 269.6 297 55.6
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 4.7e-70 268.9 285 59.3
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 1.4e-69 267.3 265 59.6
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 4.0e-69 265.8 304 61.8
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 4.0e-69 265.8 327 60.2
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 8.9e-69 264.6 291 54.0
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.5e-68 263.8 247 59.9
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 2.0e-68 263.5 295 62.7
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 2.6e-68 263.1 343 52.2
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 5.8e-68 261.9 247 59.5
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 9.9e-68 261.2 274 58.0
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 2.2e-67 260.0 291 52.9
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 4.9e-67 258.8 247 59.1
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 8.3e-67 258.1 298 57.0
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.1e-66 257.7 291 52.6
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 4.1e-66 255.8 232 62.5
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 4.1e-66 255.8 309 51.8
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 7.1e-66 255.0 253 63.2
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 1.6e-65 253.8 262 58.4
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 1.6e-65 253.8 289 52.9
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 2.1e-65 253.4 296 54.7
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 2.1e-65 253.4 296 54.7
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.1e-65 253.4 307 53.1
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 6.0e-65 251.9 291 54.0
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 1.7e-64 250.4 288 52.4
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 2.3e-64 250.0 291 54.0
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 5.1e-64 248.8 288 51.7
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 6.6e-64 248.4 289 52.9
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 8.6e-64 248.1 231 61.0
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 4.3e-63 245.7 293 50.9
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 5.6e-63 245.4 289 54.7
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 2.1e-62 243.4 223 61.0
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 3.6e-62 242.7 290 50.7
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 3.6e-62 242.7 308 50.3
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 6.2e-62 241.9 282 52.1
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 1.4e-61 240.7 228 62.7
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 1.8e-61 240.4 306 51.6
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 8.9e-61 238.0 238 57.1
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.5e-60 237.3 238 57.1
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 2.0e-60 236.9 294 56.1
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 2.6e-60 236.5 310 48.7
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 3.4e-60 236.1 295 54.2
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 7.6e-60 235.0 238 56.7
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 7.6e-60 235.0 307 49.8
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 7.6e-60 235.0 215 61.4
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 1.3e-59 234.2 292 51.4
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.7e-59 233.8 299 48.8
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 3.8e-59 232.6 253 55.3
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 1.1e-58 231.1 314 49.4
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 3.2e-58 229.6 275 53.8
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 4.2e-58 229.2 291 51.2
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 4.6e-57 225.7 301 49.5
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 6.0e-57 225.3 307 47.9
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.0e-56 224.6 326 49.4
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 1.3e-56 224.2 227 56.4
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 3.0e-56 223.0 304 49.3
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 6.6e-56 221.9 293 50.9
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 1.1e-55 221.1 288 48.6
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 2.5e-55 219.9 324 44.4
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 3.3e-55 219.5 288 52.8
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 7.3e-55 218.4 299 50.8
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 8.1e-54 214.9 290 49.0
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 1.1e-53 214.5 289 47.8
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 1.4e-53 214.2 285 55.8
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.0e-52 210.3 243 56.8
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 2.6e-52 209.9 325 49.8
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 1.4e-50 204.1 294 45.2
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.4e-50 204.1 252 50.4
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 9.3e-50 201.4 243 55.6
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 2.7e-49 199.9 245 53.9
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 3.5e-49 199.5 256 53.5
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 1.0e-48 198.0 255 52.2
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.7e-48 197.2 255 54.1
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 1.7e-48 197.2 231 54.5
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 8.7e-48 194.9 171 62.0
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 1.9e-47 193.7 230 55.2
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 1.9e-47 193.7 230 55.2
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 3.3e-47 193.0 233 55.4
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 3.3e-47 193.0 239 54.8
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 3.3e-47 193.0 239 54.8
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 4.3e-47 192.6 299 43.8
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 5.6e-47 192.2 218 53.7
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 9.6e-47 191.4 230 54.8
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 1.6e-46 190.7 231 52.8
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 1.6e-46 190.7 297 44.8
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 2.8e-46 189.9 248 52.0
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 3.6e-46 189.5 244 52.5
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 4.8e-46 189.1 257 50.6
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 6.2e-46 188.7 251 52.6
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 1.8e-45 187.2 252 52.4
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.5e-44 184.1 250 51.6
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 2.0e-44 183.7 291 44.0
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 3.4e-44 183.0 233 53.6
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.3e-43 181.0 301 47.5
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 1.3e-43 181.0 251 47.4
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.7e-43 180.6 241 48.1
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 4.9e-43 179.1 245 51.0
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 4.9e-43 179.1 295 42.7
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 8.4e-43 178.3 247 51.8
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.1e-42 177.9 246 50.4
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 1.1e-42 177.9 232 52.2
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.9e-42 177.2 244 50.8
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 5.4e-42 175.6 299 42.1
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 3.5e-41 172.9 201 51.2
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 6.0e-41 172.2 228 52.2
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 7.9e-41 171.8 228 49.1
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 1.8e-40 170.6 237 46.8
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 3.9e-40 169.5 234 50.0
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 3.9e-40 169.5 234 50.0
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 1.5e-39 167.5 229 52.0
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 1.1e-37 161.4 242 47.1
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.8e-37 160.6 284 44.0
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 5.3e-37 159.1 278 43.5
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 9.3e-34 148.3 288 41.3
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 4.6e-33 146.0 287 39.0
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 5.1e-32 142.5 275 42.2
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 6.7e-32 142.1 210 45.2
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 6.7e-32 142.1 162 51.2
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 1.6e-30 137.5 194 44.8
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.0e-27 128.3 266 38.7
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.3e-27 127.9 259 38.6
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 4.6e-25 119.4 210 41.9
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 4.6e-25 119.4 210 41.4
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 6.1e-25 119.0 210 41.4
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 1.3e-24 117.9 211 40.8
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 1.8e-24 117.5 172 48.3
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 1.8e-24 117.5 198 41.9
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 1.8e-24 117.5 112 56.2
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 5.1e-24 115.9 168 45.2
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 2.5e-23 113.6 113 60.2
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 3.2e-18 96.7 215 33.5
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 1.0e-16 91.7 139 43.2
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 3.7e-14 83.2 63 74.6
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 4.1e-13 79.7 76 53.9
Sed0005383 Sechium edule HOM05D004418 ORTHO05D005222 2.0e-07 60.8 115 47.8


User provided reference genes

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