Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 2.6e-140 502.3 300 100.0
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 8.8e-88 327.8 300 64.3
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 1.6e-84 317.0 303 69.0
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 1.3e-83 313.9 300 65.7
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 6.5e-83 311.6 300 62.3
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.1e-79 300.8 300 62.7
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 3.3e-79 299.3 300 61.3
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 3.3e-79 299.3 300 59.3
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 3.7e-78 295.8 312 58.7
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 3.5e-76 289.3 302 61.3
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 5.9e-76 288.5 301 61.8
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 7.7e-76 288.1 312 59.9
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 1.0e-75 287.7 313 58.8
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 1.7e-75 287.0 313 58.8
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 6.5e-75 285.0 308 62.3
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 1.2e-73 280.8 308 56.8
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 2.7e-73 279.6 313 55.9
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 8.0e-73 278.1 320 55.6
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 1.4e-72 277.3 320 55.3
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 1.4e-72 277.3 315 56.5
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 4.0e-72 275.8 312 58.3
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 5.2e-72 275.4 297 55.9
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 6.8e-72 275.0 319 53.9
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 8.8e-72 274.6 302 57.0
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 2.0e-71 273.5 309 61.5
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 3.4e-71 272.7 315 56.5
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 4.4e-71 272.3 316 55.7
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 9.8e-71 271.2 304 58.2
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 9.8e-71 271.2 305 57.0
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 1.7e-70 270.4 325 56.0
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 2.2e-70 270.0 315 54.9
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 2.2e-70 270.0 334 52.7
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 2.8e-70 269.6 317 55.5
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 3.7e-70 269.2 308 59.7
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 3.7e-70 269.2 312 54.8
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 1.4e-69 267.3 317 54.9
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 1.4e-69 267.3 309 54.7
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 1.8e-69 266.9 312 55.4
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 1.8e-69 266.9 346 50.9
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 3.1e-69 266.2 315 54.6
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 4.1e-69 265.8 324 56.5
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 4.1e-69 265.8 299 56.9
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 5.4e-69 265.4 329 53.5
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 1.2e-68 264.2 317 55.2
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 1.2e-68 264.2 226 66.8
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 1.6e-68 263.8 301 55.1
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 1.6e-68 263.8 313 53.7
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 2.7e-68 263.1 322 53.7
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 4.5e-68 262.3 304 54.3
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 5.9e-68 261.9 319 52.7
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 7.7e-68 261.5 319 52.4
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 2.9e-67 259.6 319 52.0
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 2.9e-67 259.6 257 59.5
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 3.8e-67 259.2 319 52.0
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 3.8e-67 259.2 320 53.1
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 3.8e-67 259.2 256 59.8
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 8.5e-67 258.1 329 55.9
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 1.9e-66 256.9 318 54.1
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 5.5e-66 255.4 320 52.5
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 9.4e-66 254.6 320 52.5
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 1.6e-65 253.8 322 50.0
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 2.1e-65 253.4 313 52.1
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 2.7e-65 253.1 310 57.4
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 3.6e-65 252.7 318 52.2
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 6.1e-65 251.9 313 51.4
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 6.1e-65 251.9 309 51.1
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 8.0e-65 251.5 302 53.0
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 1.0e-64 251.1 319 51.7
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 1.4e-64 250.8 335 50.4
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 1.8e-64 250.4 313 51.1
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 1.5e-63 247.3 332 53.0
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 2.6e-63 246.5 318 50.3
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 2.6e-63 246.5 318 50.3
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 2.6e-63 246.5 297 57.2
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 2.2e-62 243.4 311 55.6
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 6.3e-62 241.9 322 49.1
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 1.4e-61 240.7 337 51.0
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 5.4e-61 238.8 280 54.3
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 9.2e-61 238.0 256 55.1
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 2.0e-60 236.9 320 53.8
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 4.5e-60 235.7 304 50.3
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 5.9e-60 235.3 354 46.6
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 7.7e-60 235.0 311 51.4
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 7.7e-60 235.0 311 51.4
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 1.0e-59 234.6 224 62.9
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 3.8e-59 232.6 312 49.4
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 6.6e-59 231.9 311 47.9
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 8.6e-59 231.5 315 49.8
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 2.5e-58 229.9 322 47.2
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 1.2e-57 227.6 318 47.5
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 4.7e-57 225.7 305 47.9
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 4.7e-57 225.7 320 51.6
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 6.1e-57 225.3 318 50.0
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 8.0e-57 224.9 317 51.4
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 1.0e-56 224.6 316 48.1
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 1.7e-54 217.2 317 45.1
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 3.7e-54 216.1 314 46.8
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 3.7e-54 216.1 308 47.1
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 1.2e-52 211.1 315 45.4
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 4.6e-52 209.1 256 52.7
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 1.7e-51 207.2 298 45.3
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 1.9e-50 203.8 323 46.7
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 4.3e-50 202.6 300 44.7
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 4.7e-49 199.1 250 50.8
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 3.1e-48 196.4 300 45.3
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 6.8e-48 195.3 198 54.5
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 6.8e-48 195.3 198 54.5
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 2.0e-47 193.7 240 54.6
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 7.5e-47 191.8 206 51.9
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 7.5e-47 191.8 206 51.9
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 1.2e-44 184.5 212 57.5
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 7.8e-44 181.8 308 43.8
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 2.3e-43 180.3 195 53.8
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 5.0e-43 179.1 181 61.3
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 6.6e-43 178.7 269 45.0
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 4.7e-41 172.6 340 39.4
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 8.1e-41 171.8 239 47.7
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 8.1e-41 171.8 172 58.1
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 8.9e-40 168.3 311 43.4
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 1.2e-39 167.9 221 52.5
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 5.8e-39 165.6 340 38.2
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 8.3e-38 161.8 218 46.3
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 1.3e-35 154.5 212 51.4
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 3.9e-35 152.9 206 51.5
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 8.6e-35 151.8 263 44.1
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 1.9e-34 150.6 216 49.5
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 3.3e-34 149.8 237 42.6
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 4.3e-34 149.4 240 45.8
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 2.9e-30 136.7 211 46.0
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 1.6e-28 131.0 270 38.5
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 3.5e-28 129.8 304 39.1
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 7.8e-28 128.6 271 39.1
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 1.3e-27 127.9 196 44.4
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 3.9e-27 126.3 309 36.6
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 8.6e-27 125.2 171 46.8
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 7.3e-26 122.1 150 44.0
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 5.4e-21 105.9 101 62.4
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 1.1e-18 98.2 109 55.0
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 1.1e-18 98.2 108 57.4
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 9.6e-18 95.1 108 51.9
arahy.Tifrunner.gnm1.ann1.0K86JE Arachis hypogaea HOM05D002737 ORTHO05D005828 6.2e-17 92.4 249 34.1
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 3.1e-16 90.1 100 52.0
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 1.2e-15 88.2 150 42.7
AagrBONN_evm.TU.Sc2ySwM_368.3239 Anthoceros agrestis HOM05D002737 ORTHO05D005828 3.4e-15 86.7 71 66.2
Haze_00727 Corylus avellana HOM05D002737 ORTHO05D005828 1.9e-10 70.9 149 39.6
arahy.Tifrunner.gnm1.ann1.K04YXN Arachis hypogaea HOM05D002737 ORTHO05D023756 7.4e-10 68.9 96 46.9
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 9.6e-10 68.6 99 46.5
AagrBONN_evm.TU.Sc2ySwM_368.3190 Anthoceros agrestis HOM05D000001 ORTHO05D072262 2.1e-09 67.4 52 67.3
Rhsim13G0195400 Rhododendron simsii HOM05D002737 ORTHO05D005828 6.2e-09 65.9 128 40.6
Cpa.g.sc23.121 Carica papaya HOM05D002737 ORTHO05D005828 8.1e-09 65.5 141 39.7
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 4.0e-08 63.2 52 59.6
Lalb_Chr06g0164011 Lupinus albus HOM05D002737 ORTHO05D005828 9.0e-08 62.0 140 37.9
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 1.5e-07 61.2 115 40.0
CARHR119790 Cardamine hirsuta HOM05D002737 ORTHO05D005828 8.4e-06 55.5 201 31.3


User provided reference genes

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