Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 0.0e+00 1174.1 618 100.0
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 6.0e-224 781.2 623 70.0
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 3.5e-208 728.8 637 66.9
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 3.0e-207 725.7 645 65.9
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 1.1e-198 697.2 631 64.8
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 1.8e-196 689.9 648 63.0
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 4.2e-193 678.7 631 64.3
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 4.3e-190 668.7 630 64.0
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 1.4e-188 663.7 602 64.3
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 1.8e-188 663.3 622 62.4
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 3.1e-188 662.5 498 71.9
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 9.0e-188 661.0 622 62.7
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.3e-186 657.1 630 62.9
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 3.8e-186 655.6 622 62.4
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 1.1e-185 654.1 599 63.6
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.9e-185 653.3 644 61.5
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 7.1e-185 651.4 702 57.8
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 7.9e-184 647.9 620 61.8
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 4.3e-182 642.1 630 62.5
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 7.6e-179 631.3 644 61.0
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 7.9e-176 621.3 634 59.6
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 2.3e-175 619.8 639 59.3
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 2.3e-175 619.8 633 59.9
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 3.9e-175 619.0 628 60.7
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 3.3e-174 615.9 659 59.0
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 2.2e-173 613.2 470 71.1
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 2.8e-173 612.8 626 60.9
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 8.5e-170 601.3 602 61.3
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 5.5e-169 598.6 672 56.7
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 3.0e-167 592.8 640 56.4
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 6.3e-165 585.1 652 57.4
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 1.1e-164 584.3 625 57.4
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 3.4e-163 579.3 651 56.7
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 1.0e-162 577.8 652 56.7
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 5.5e-161 572.0 622 57.6
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.1e-158 564.3 619 55.6
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 2.4e-156 556.6 632 55.7
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 4.1e-156 555.8 610 56.1
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 3.8e-154 549.3 511 64.2
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 1.5e-153 547.4 605 57.4
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 3.2e-153 546.2 620 54.8
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 4.2e-153 545.8 622 55.3
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 1.2e-152 544.3 700 52.3
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 1.0e-151 541.2 636 55.7
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 1.4e-151 540.8 699 50.6
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 3.0e-151 539.7 619 54.6
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 5.2e-151 538.9 621 54.3
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 8.8e-151 538.1 683 52.7
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.0e-150 537.0 502 63.7
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 4.4e-150 535.8 627 53.7
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 3.7e-149 532.7 628 55.6
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 2.7e-147 526.6 682 51.9
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 2.9e-146 523.1 673 53.2
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 6.5e-146 521.9 765 47.7
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 1.1e-145 521.2 765 47.7
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 1.5e-145 520.8 648 53.5
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 1.0e-143 514.6 608 53.3
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 5.2e-143 512.3 540 58.3
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 1.7e-141 507.3 631 53.1
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 7.0e-140 501.9 591 53.8
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 4.5e-139 499.2 621 51.0
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 1.0e-138 498.0 512 60.2
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 6.6e-138 495.4 543 56.4
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 1.5e-137 494.2 585 54.2
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 1.5e-137 494.2 609 53.0
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 3.3e-137 493.0 666 49.4
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 2.1e-136 490.3 496 58.1
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 1.2e-134 484.6 610 52.3
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 7.5e-134 481.9 625 51.5
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 9.8e-134 481.5 604 52.0
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 1.3e-133 481.1 478 58.6
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 1.7e-133 480.7 401 67.6
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 1.7e-133 480.7 495 59.0
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 7.0e-132 475.3 488 57.4
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 9.2e-132 474.9 543 53.8
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 9.2e-132 474.9 605 52.2
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 2.7e-131 473.4 687 46.4
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 3.5e-131 473.0 616 51.8
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 2.3e-130 470.3 606 52.6
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 3.8e-130 469.5 606 52.5
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 3.8e-130 469.5 606 52.5
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 1.1e-129 468.0 622 49.2
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 1.1e-129 468.0 592 51.0
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 2.1e-128 463.8 685 46.4
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 4.7e-128 462.6 660 47.3
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 3.1e-127 459.9 555 54.2
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 3.7e-125 453.0 619 49.3
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 1.2e-120 438.0 487 55.4
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 7.5e-118 428.7 800 41.6
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 9.8e-118 428.3 606 50.0
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 2.4e-116 423.7 624 48.1
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 3.9e-114 416.4 543 50.6
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 7.8e-107 392.1 623 42.9
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 1.2e-104 384.8 286 72.4
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 1.6e-104 384.4 370 61.1
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 9.2e-100 368.6 403 56.1
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 7.8e-99 365.5 397 57.7
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 3.0e-98 363.6 396 57.6
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 1.1e-97 361.7 425 54.8
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 3.9e-90 336.7 308 61.7
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 2.8e-88 330.5 621 40.7
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 4.0e-87 326.6 257 70.8
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 6.4e-85 319.3 371 55.8
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 2.2e-77 294.3 367 53.1
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 1.2e-75 288.5 254 65.0
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 3.3e-73 280.4 252 63.1
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 4.8e-72 276.6 316 51.6
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 4.6e-67 260.0 370 47.8
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 2.2e-64 251.1 246 58.5
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 2.7e-59 234.2 442 39.6
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 4.8e-56 223.4 180 66.7
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 3.7e-48 197.2 238 52.5
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 3.6e-43 180.6 180 57.8
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.8e-39 168.3 272 45.2
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 7.0e-39 166.4 129 65.1
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 2.0e-38 164.9 140 62.1
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 5.2e-34 150.2 108 73.1
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 7.5e-33 146.4 194 47.4
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 2.4e-31 141.4 114 69.3
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 9.1e-31 139.4 168 53.0
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 4.9e-24 117.1 237 38.4
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 2.0e-22 111.7 357 28.0
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 1.5e-17 95.5 70 71.4
Cpa.g.sc14.174 Carica papaya HOM05D006007 ORTHO05D007518 9.2e-15 86.3 106 47.2
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 2.7e-14 84.7 157 41.4
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 9.5e-12 76.3 73 60.3
SGA_v2.0_scaffold52G19163 Striga asiatica HOM05D020362 ORTHO05D030297 1.0e-10 72.8 132 40.9
Oeu051017.1 Olea europaea HOM05D020362 ORTHO05D030297 2.3e-10 71.6 134 44.0
GSVIVG01036834001 Vitis vinifera HOM05D002081 ORTHO05D007518 1.9e-07 62.0 51 66.7
Gohir.A10G219800 Gossypium hirsutum HOM05D000032 ORTHO05D005217 1.2e-06 59.3 178 30.9
Gohir.D10G229300 Gossypium hirsutum HOM05D000032 ORTHO05D005217 3.5e-06 57.8 178 30.9
Gorai.011G261800 Gossypium raimondii HOM05D000032 ORTHO05D005217 3.5e-06 57.8 178 30.9
SEGI_23155 Sequoiadendron giganteum HOM05D000032 ORTHO05D005217 6.0e-06 57.0 160 33.8
PSO210G4406 Papaver somniferum HOM05D000032 ORTHO05D005217 7.8e-06 56.6 158 32.3


User provided reference genes

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