Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR256G0009 Trochodendron aralioides HOM05D017516 ORTHO05D019582 2.3e-180 635.6 349 100.0
MBI16_g27899_MAGBIO Magnolia biondii HOM05D017516 ORTHO05D019582 1.6e-109 400.2 304 74.7
Dinv42595 Davidia involucrata HOM05D017516 ORTHO05D019582 1.7e-95 353.6 297 67.3
GSVIVG01009204001 Vitis vinifera HOM05D017516 ORTHO05D019582 3.9e-95 352.4 299 65.6
ATR0767G216 Amborella trichopoda HOM05D017516 ORTHO05D019582 1.3e-87 327.4 306 62.4
Nn5g29826 Nelumbo nucifera HOM05D017516 ORTHO05D019582 1.1e-62 244.6 168 77.4
CSS0031923 Camellia sinensis var. sinensis HOM05D017516 ORTHO05D019582 4.8e-61 239.2 204 62.7
SEGI_19284 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 2.3e-31 140.6 212 40.6
SEGI_23700 Sequoiadendron giganteum HOM05D003598 ORTHO05D004198 1.0e-26 125.2 216 39.4
Mapoly0032s0120 Marchantia polymorpha HOM05D003598 ORTHO05D004198 3.0e-23 113.6 239 34.3
AagrBONN_evm.TU.Sc2ySwM_368.147 Anthoceros agrestis HOM05D003598 ORTHO05D004198 1.5e-17 94.7 238 33.6
ATR0618G278 Amborella trichopoda HOM05D003598 ORTHO05D004198 2.1e-16 90.9 212 34.0
MBI06_g36503_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 6.1e-16 89.4 207 33.8
Migut.E01352 Erythranthe guttata HOM05D003598 ORTHO05D004198 1.8e-15 87.8 212 35.8
MBI06_g34034_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 3.0e-15 87.0 207 33.3
Lsat_1_v5_gn_3_7261 Lactuca sativa HOM05D003598 ORTHO05D004198 4.0e-15 86.7 208 35.6
Potri.002G062200 Populus trichocarpa HOM05D003598 ORTHO05D004198 6.8e-15 85.9 216 35.2
CDE02G3181 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 1.2e-14 85.1 205 34.1
CDE04G2679 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 1.2e-14 85.1 205 33.2
Pp3c13_7070 Physcomitrium patens HOM05D003598 ORTHO05D004198 1.2e-14 85.1 238 28.6
CDE05G0161 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 1.5e-14 84.7 211 33.2
MSTRG.1768 Avicennia marina HOM05D003598 ORTHO05D004198 2.0e-14 84.3 209 34.9
SMO367G0289 Selaginella moellendorffii HOM05D003598 ORTHO05D004198 3.4e-14 83.6 218 29.4
Sed0014776 Sechium edule HOM05D003598 ORTHO05D004198 4.4e-14 83.2 206 37.9
Sed0024830 Sechium edule HOM05D003598 ORTHO05D004198 4.4e-14 83.2 206 37.9
Actinidia11173 Actinidia chinensis HOM05D003598 ORTHO05D004198 7.5e-14 82.4 212 33.5
DCAR_002566 Daucus carota HOM05D003598 ORTHO05D004198 7.5e-14 82.4 210 32.4
MBI03_g24013_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 7.5e-14 82.4 209 34.9
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 7.5e-14 82.4 208 33.7
QL02p009504 Quercus lobata HOM05D003598 ORTHO05D004198 9.8e-14 82.0 216 33.8
GSVIVG01010181001 Vitis vinifera HOM05D003598 ORTHO05D004198 1.3e-13 81.6 209 36.4
Cc08_g05000 Coffea canephora HOM05D003598 ORTHO05D004198 2.2e-13 80.9 207 32.9
PGR042G0762 Punica granatum HOM05D003598 ORTHO05D004198 2.2e-13 80.9 210 32.9
CANSAT64G1690 Cannabis sativa HOM05D003598 ORTHO05D004198 3.7e-13 80.1 205 35.1
HanXRQChr17g0533671 Helianthus annuus HOM05D003598 ORTHO05D004198 3.7e-13 80.1 178 36.0
Atru.chr9.2066 Acer truncatum HOM05D003598 ORTHO05D004198 6.3e-13 79.3 207 34.3
AUR62015205 Chenopodium quinoa HOM05D003598 ORTHO05D004198 6.3e-13 79.3 209 34.9
Hma1.2p1_0218F.1_g092550 Hydrangea macrophylla HOM05D003598 ORTHO05D004198 6.3e-13 79.3 210 37.1
Manes.01G073300 Manihot esculenta HOM05D003598 ORTHO05D004198 1.1e-12 78.6 210 34.3
unitig_899.g14735 Utricularia gibba HOM05D003598 ORTHO05D004198 1.1e-12 78.6 209 34.9
AUR62017668 Chenopodium quinoa HOM05D003598 ORTHO05D004198 1.4e-12 78.2 206 34.0
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 2.4e-12 77.4 215 33.0
BolC3t13511H Brassica oleracea HOM05D003598 ORTHO05D004198 2.4e-12 77.4 215 33.0
BraA03t10207Z Brassica rapa HOM05D003598 ORTHO05D004198 2.4e-12 77.4 215 33.0
Thhalv10015717m.g Eutrema salsugineum HOM05D003598 ORTHO05D004198 2.4e-12 77.4 218 33.0
Potri.005G198900 Populus trichocarpa HOM05D003598 ORTHO05D004198 3.1e-12 77.0 216 31.9
Sc06g0004000 Simmondsia chinensis HOM05D003598 ORTHO05D004198 3.1e-12 77.0 218 29.8
BcaC04g18694 Brassica carinata HOM05D003598 ORTHO05D004198 4.1e-12 76.6 210 34.3
CiPaw.07G157700 Carya illinoinensis HOM05D003598 ORTHO05D004198 4.1e-12 76.6 207 33.3
Carub.0008s0217 Capsella rubella HOM05D003598 ORTHO05D004198 7.0e-12 75.9 211 32.7
TWI77G0411 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 7.0e-12 75.9 206 35.0
Dinv32105 Davidia involucrata HOM05D003598 ORTHO05D004198 9.1e-12 75.5 213 32.9
Zm00001eb066420 Zea mays HOM05D003598 ORTHO05D004198 9.1e-12 75.5 203 29.6
CSS0049191 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 1.2e-11 75.1 209 35.4
Carub.0006s1666 Capsella rubella HOM05D003598 ORTHO05D004198 1.2e-11 75.1 208 33.2
TWI53G1744 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 1.2e-11 75.1 208 33.7
TAR371G1198 Trochodendron aralioides HOM05D003598 ORTHO05D004198 1.2e-11 75.1 216 31.5
Zm00001eb066470 Zea mays HOM05D003598 ORTHO05D004198 1.2e-11 75.1 203 29.6
A03p08820 Brassica napus HOM05D003598 ORTHO05D004198 1.6e-11 74.7 221 32.1
SalBow8G4212 Salvia bowleyana HOM05D003598 ORTHO05D004198 1.6e-11 74.7 209 32.5
Sc10g0007060 Simmondsia chinensis HOM05D003598 ORTHO05D004198 1.6e-11 74.7 210 32.9
BraA10t44179Z Brassica rapa HOM05D001989 ORTHO05D004198 2.0e-11 74.3 207 34.3
Sp6g25920 Schrenkiella parvula HOM05D003598 ORTHO05D004198 2.0e-11 74.3 213 33.3
A10p21130 Brassica napus HOM05D003598 ORTHO05D004198 2.7e-11 73.9 209 33.5
C03p10310 Brassica napus HOM05D003598 ORTHO05D004198 2.7e-11 73.9 221 32.1
Eucgr.J00852 Eucalyptus grandis HOM05D003598 ORTHO05D004198 2.7e-11 73.9 218 31.2
Cpa.g.sc51.45 Carica papaya HOM05D003598 ORTHO05D004198 4.5e-11 73.2 224 30.8
Dinv05241 Davidia involucrata HOM05D003598 ORTHO05D004198 4.5e-11 73.2 211 31.3
Rhsim06G0126100 Rhododendron simsii HOM05D003598 ORTHO05D004198 4.5e-11 73.2 213 31.5
THA.LOC104802853 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 5.9e-11 72.8 203 34.5
Os04g0674400 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 7.7e-11 72.4 204 29.9
vmacro09196 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 7.7e-11 72.4 209 33.0
THA.LOC104820751 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 1.0e-10 72.0 208 31.7
ECA240G3477 Erigeron canadensis HOM05D003598 ORTHO05D004198 1.3e-10 71.6 207 32.9
Ciclev10032368m.g Citrus clementina HOM05D003598 ORTHO05D004198 2.3e-10 70.9 212 31.6
COL.COLO4_11873 Corchorus olitorius HOM05D003598 ORTHO05D004198 2.3e-10 70.9 207 32.4
Haze_22545 Corylus avellana HOM05D003598 ORTHO05D004198 2.9e-10 70.5 215 31.2
Os04g0682050 Oryza sativa ssp. japonica HOM05D003598 ORTHO05D004198 2.9e-10 70.5 204 29.4
Sopen03g038270 Solanum pennellii HOM05D003598 ORTHO05D004198 2.9e-10 70.5 204 32.8
PGSC0003DMG400005723 Solanum tuberosum HOM05D003598 ORTHO05D004198 2.9e-10 70.5 204 32.8
Cfa013868 Carpinus fangiana HOM05D003598 ORTHO05D004198 3.8e-10 70.1 212 31.1
Sabra05G0151500 Salix brachista HOM05D003598 ORTHO05D004198 3.8e-10 70.1 234 27.4
Cc08_g04900 Coffea canephora HOM05D003598 ORTHO05D004198 5.0e-10 69.7 164 32.9
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 5.0e-10 69.7 210 31.0
Lj6A721G58 Lonicera japonica HOM05D003598 ORTHO05D004198 5.0e-10 69.7 208 29.3
Peaxi162Scf00193g00013 Petunia axillaris HOM05D003598 ORTHO05D004198 5.0e-10 69.7 208 32.7
Nitab4.5_0002941g0020 Nicotiana tabacum HOM05D003598 ORTHO05D004198 6.5e-10 69.3 204 32.8
PSO782G0946 Papaver somniferum HOM05D003598 ORTHO05D004198 6.5e-10 69.3 210 29.5
AL6G29630 Arabidopsis lyrata HOM05D003598 ORTHO05D004198 8.6e-10 68.9 213 32.4
PSO063G0008 Papaver somniferum HOM05D003598 ORTHO05D004198 8.6e-10 68.9 210 29.0
Pp3c8_19850 Physcomitrium patens HOM05D003598 ORTHO05D004198 8.6e-10 68.9 203 29.1
Aa31LG11G11250 Aethionema arabicum HOM05D003598 ORTHO05D004198 1.1e-09 68.6 212 32.5
CiPaw.08G060100 Carya illinoinensis HOM05D003598 ORTHO05D004198 1.5e-09 68.2 208 33.2
TAR629G0796 Trochodendron aralioides HOM05D003598 ORTHO05D004198 1.5e-09 68.2 162 32.1
MELO3C024034.2 Cucumis melo HOM05D003598 ORTHO05D004198 1.9e-09 67.8 207 32.4
PGSC0003DMG400030870 Solanum tuberosum HOM05D003598 ORTHO05D004198 1.9e-09 67.8 212 32.5
Duzib133G1064 Durio zibethinus HOM05D003598 ORTHO05D004198 2.5e-09 67.4 215 34.0
Nn4g24926 Nelumbo nucifera HOM05D003598 ORTHO05D004198 3.3e-09 67.0 205 33.2
Thecc.01G274200 Theobroma cacao HOM05D003598 ORTHO05D004198 5.5e-09 66.2 205 31.7
Ah.01g001620 Amaranthus hybridus HOM05D003598 ORTHO05D004198 9.5e-09 65.5 207 30.0
CARHR194630 Cardamine hirsuta HOM05D003598 ORTHO05D004198 9.5e-09 65.5 214 31.8
Cc00_g26130 Coffea canephora HOM05D003598 ORTHO05D004198 9.5e-09 65.5 171 33.9
HanXRQChr03g0086691 Helianthus annuus HOM05D003598 ORTHO05D004198 9.5e-09 65.5 172 33.7
Cc00_g23020 Coffea canephora HOM05D003598 ORTHO05D004198 1.2e-08 65.1 166 33.1
Lalb_Chr03g0024851 Lupinus albus HOM05D003598 ORTHO05D004198 1.2e-08 65.1 173 32.4
Solyc08g075730.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 1.2e-08 65.1 212 32.1
Sopen08g024380 Solanum pennellii HOM05D003598 ORTHO05D004198 1.2e-08 65.1 212 32.1
Ca_03027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 1.6e-08 64.7 207 31.4
FvH4_4g36731 Fragaria vesca HOM05D003598 ORTHO05D004198 1.6e-08 64.7 203 32.5
AT5G18400 Arabidopsis thaliana HOM05D003598 ORTHO05D004198 2.1e-08 64.3 211 31.3
CBR_g263 Chara braunii HOM05D003598 ORTHO05D004198 2.1e-08 64.3 184 30.4
Gohir.D08G204800 Gossypium hirsutum HOM05D003598 ORTHO05D004198 2.1e-08 64.3 211 33.6
Solyc03g119420.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 2.1e-08 64.3 204 32.4
AUR62000767 Chenopodium quinoa HOM05D003598 ORTHO05D004198 2.8e-08 63.9 206 30.6
CsaV3_3G031510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 2.8e-08 63.9 210 33.3
Ah.01g012930 Amaranthus hybridus HOM05D003598 ORTHO05D004198 3.6e-08 63.5 205 30.2
CAN.G1425.3 Capsicum annuum HOM05D003598 ORTHO05D004198 3.6e-08 63.5 204 32.4
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.6e-08 63.5 203 32.5
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.6e-08 63.5 222 31.1
Gohir.A11G124700 Gossypium hirsutum HOM05D003598 ORTHO05D004198 3.6e-08 63.5 202 29.2
Gohir.D11G129900 Gossypium hirsutum HOM05D003598 ORTHO05D004198 4.7e-08 63.2 206 28.6
Gorai.004G216900 Gossypium raimondii HOM05D003598 ORTHO05D004198 4.7e-08 63.2 211 33.6
Gorai.007G139000 Gossypium raimondii HOM05D003598 ORTHO05D004198 4.7e-08 63.2 202 29.2
Nitab4.5_0001450g0070 Nicotiana tabacum HOM05D003598 ORTHO05D004198 4.7e-08 63.2 206 31.1
Nitab4.5_0001659g0130 Nicotiana tabacum HOM05D003598 ORTHO05D004198 4.7e-08 63.2 206 31.6
Cc08_g04800 Coffea canephora HOM05D003598 ORTHO05D004198 6.1e-08 62.8 174 33.9
Gohir.A08G186600 Gossypium hirsutum HOM05D003598 ORTHO05D004198 8.0e-08 62.4 211 33.2
MD16G1000500 Malus domestica HOM05D003598 ORTHO05D004198 1.0e-07 62.0 201 30.3
TPR.G32324 Trifolium pratense HOM05D003598 ORTHO05D004198 1.4e-07 61.6 204 31.4
RcHm_v2.0_Chr4g0446451 Rosa chinensis HOM05D003598 ORTHO05D004198 1.8e-07 61.2 203 32.0
AUR62005202 Chenopodium quinoa HOM05D003598 ORTHO05D004198 2.3e-07 60.8 176 31.8
Psat7g173800 Pisum sativum HOM05D003598 ORTHO05D004198 2.3e-07 60.8 205 30.2
Ca_14027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 4.0e-07 60.1 207 31.9
Prupe.1G345400 Prunus persica HOM05D003598 ORTHO05D004198 4.0e-07 60.1 203 30.0
Hund03395 Selenicereus undatus HOM05D003598 ORTHO05D004198 4.0e-07 60.1 167 29.9
BolC9t58693H Brassica oleracea HOM05D003598 ORTHO05D004198 5.2e-07 59.7 207 30.0
CSS0011637 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D000909 5.2e-07 59.7 209 33.5
Lsat_1_v5_gn_6_87300 Lactuca sativa HOM05D003598 ORTHO05D004198 5.2e-07 59.7 180 32.2
Phvul.L003737 Phaseolus vulgaris HOM05D003598 ORTHO05D004198 5.2e-07 59.7 209 32.1
Medtr4g074480 Medicago truncatula HOM05D003598 ORTHO05D004198 6.8e-07 59.3 207 30.9
HPP92_009730 Vanilla planifolia HOM05D003598 ORTHO05D004198 6.8e-07 59.3 212 25.5
Aqoxy3G01046 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 8.9e-07 58.9 208 31.2
MD13G1007600 Malus domestica HOM05D003598 ORTHO05D004198 8.9e-07 58.9 200 29.5
Duzib138G0618 Durio zibethinus HOM05D003598 ORTHO05D004198 1.2e-06 58.5 204 31.4
Glyma.11G103000 Glycine max HOM05D003598 ORTHO05D004198 1.2e-06 58.5 204 30.4
Glyma.12G141400 Glycine max HOM05D003598 ORTHO05D004198 2.6e-06 57.4 204 30.4
Medtr4g108000 Medicago truncatula HOM05D003598 ORTHO05D004198 2.6e-06 57.4 207 30.4
QL09p042139 Quercus lobata HOM05D003598 ORTHO05D004198 3.4e-06 57.0 180 30.6
Prupe.8G036300 Prunus persica HOM05D003598 ORTHO05D004198 4.4e-06 56.6 177 27.7
COL.COLO4_09060 Corchorus olitorius HOM05D003598 ORTHO05D004198 7.5e-06 55.8 203 29.6
vmacro12412 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 7.5e-06 55.8 190 28.4
VMungo1127G1291 Vigna mungo HOM05D003598 ORTHO05D004198 7.5e-06 55.8 211 30.8


User provided reference genes

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