Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR250G0004 Trochodendron aralioides HOM05D001656 ORTHO05D003489 4.9e-154 547.7 271 100.0
TAR625G1477 Trochodendron aralioides HOM05D001656 ORTHO05D003489 9.6e-110 400.6 221 87.8
GSVIVG01029697001 Vitis vinifera HOM05D001656 ORTHO05D003489 7.9e-96 354.4 220 78.6
PSO675G3868 Papaver somniferum HOM05D001656 ORTHO05D003489 2.3e-95 352.8 233 74.7
MBI17_g13522_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D003489 3.0e-95 352.4 228 78.9
PSO541G1368 Papaver somniferum HOM05D001656 ORTHO05D003489 3.0e-95 352.4 233 74.2
Aqoxy6G00378 Aquilegia oxysepala HOM05D001656 ORTHO05D003489 2.8e-93 345.9 231 76.2
CiPaw.15G153400 Carya illinoinensis HOM05D001656 ORTHO05D003489 3.7e-93 345.5 218 78.9
Cfa020712 Carpinus fangiana HOM05D001656 ORTHO05D003489 1.8e-92 343.2 224 75.9
Prupe.1G542900 Prunus persica HOM05D001656 ORTHO05D003489 2.0e-91 339.7 220 76.8
Eucgr.F02184 Eucalyptus grandis HOM05D001656 ORTHO05D003489 2.6e-91 339.3 224 75.0
QL12p040546 Quercus lobata HOM05D001656 ORTHO05D003489 3.4e-91 339.0 218 76.6
Dinv18177 Davidia involucrata HOM05D001656 ORTHO05D003489 1.3e-90 337.0 219 76.7
ClCG08G009120 Citrullus lanatus HOM05D001656 ORTHO05D003489 1.1e-89 334.0 221 77.4
CANSAT25G1280 Cannabis sativa HOM05D001656 ORTHO05D003489 1.4e-89 333.6 219 76.3
PGR031G1306 Punica granatum HOM05D001656 ORTHO05D003489 1.9e-89 333.2 224 75.0
MELO3C026510.2 Cucumis melo HOM05D001656 ORTHO05D003489 2.1e-88 329.7 221 76.0
CsaV3_6G036010 Cucumis sativus L. HOM05D001656 ORTHO05D003489 2.1e-88 329.7 221 76.0
Sed0023766 Sechium edule HOM05D001656 ORTHO05D003489 3.6e-88 328.9 221 75.1
Nn1g06077 Nelumbo nucifera HOM05D001656 ORTHO05D003489 1.0e-87 327.4 219 74.9
MD15G1398300 Malus domestica HOM05D001656 ORTHO05D003489 1.8e-87 326.6 222 74.3
MD08G1211000 Malus domestica HOM05D001656 ORTHO05D003489 6.7e-87 324.7 220 73.6
TWI56G0670 Tripterygium wilfordii HOM05D001656 ORTHO05D003489 1.1e-86 323.9 222 73.4
TWI36G0018 Tripterygium wilfordii HOM05D001656 ORTHO05D003489 3.3e-86 322.4 222 73.4
Actinidia23982 Actinidia chinensis HOM05D001656 ORTHO05D003489 1.3e-85 320.5 237 70.0
Atru.chr6.982 Acer truncatum HOM05D001656 ORTHO05D003489 8.2e-85 317.8 286 60.5
vmacro14265 Vaccinium macrocarpon HOM05D001656 ORTHO05D003489 8.2e-85 317.8 239 69.5
Nitab4.5_0002875g0070 Nicotiana tabacum HOM05D001656 ORTHO05D003489 1.1e-84 317.4 248 66.5
Actinidia11666 Actinidia chinensis HOM05D001656 ORTHO05D003489 4.1e-84 315.5 239 69.0
Solyc03g113640.4 Solanum lycopersicum HOM05D001656 ORTHO05D003489 1.5e-83 313.5 248 65.7
HanXRQChr11g0344231 Helianthus annuus HOM05D001656 ORTHO05D003489 2.6e-83 312.8 225 70.7
FAN04G0452 Fragaria x ananassa HOM05D001656 ORTHO05D003489 3.4e-83 312.4 222 73.0
Gohir.A01G125100 Gossypium hirsutum HOM05D001656 ORTHO05D003489 5.9e-83 311.6 218 68.3
Thecc.08G080200 Theobroma cacao HOM05D001656 ORTHO05D003489 5.9e-83 311.6 218 71.6
FvH4_5g33540 Fragaria vesca HOM05D001656 ORTHO05D003489 1.0e-82 310.8 224 72.3
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.0e-82 310.8 224 72.3
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.0e-82 310.8 224 72.3
Lsat_1_v5_gn_1_69641 Lactuca sativa HOM05D001656 ORTHO05D003489 1.0e-82 310.8 233 68.2
Sopen03g032680 Solanum pennellii HOM05D001656 ORTHO05D003489 1.3e-82 310.5 248 65.3
Gorai.002G137500 Gossypium raimondii HOM05D001656 ORTHO05D003489 2.2e-82 309.7 218 67.9
Peaxi162Scf00017g02238 Petunia axillaris HOM05D001656 ORTHO05D003489 2.2e-82 309.7 308 55.2
RcHm_v2.0_Chr7g0232361 Rosa chinensis HOM05D001656 ORTHO05D003489 2.9e-82 309.3 221 72.9
PGSC0003DMG400024574 Solanum tuberosum HOM05D001656 ORTHO05D003489 2.9e-82 309.3 248 65.3
Gohir.D01G112700 Gossypium hirsutum HOM05D001656 ORTHO05D003489 3.8e-82 308.9 218 67.9
Nn5g28753 Nelumbo nucifera HOM05D001656 ORTHO05D003489 5.0e-82 308.5 186 80.6
CSS0003613 Camellia sinensis var. sinensis HOM05D001656 ORTHO05D003489 6.5e-82 308.1 241 66.4
Duzib116G0138 Durio zibethinus HOM05D001656 ORTHO05D003489 1.1e-81 307.4 218 70.2
Duzib093G0139 Durio zibethinus HOM05D001656 ORTHO05D003489 5.5e-81 305.1 219 68.0
CDE06G2450 Ceratophyllum demersum HOM05D001656 ORTHO05D003489 1.6e-80 303.5 221 67.0
Gohir.A06G028500 Gossypium hirsutum HOM05D001656 ORTHO05D003489 1.6e-80 303.5 218 67.9
Manes.03G069648 Manihot esculenta HOM05D001656 ORTHO05D003489 1.6e-80 303.5 219 69.9
ATR0820G193 Amborella trichopoda HOM05D001656 ORTHO05D003489 2.7e-80 302.8 223 69.1
CAN.G853.38 Capsicum annuum HOM05D001656 ORTHO05D003489 3.6e-80 302.4 248 64.9
ECA248G3915 Erigeron canadensis HOM05D001656 ORTHO05D003489 3.6e-80 302.4 186 77.4
HPP92_009299 Vanilla planifolia HOM05D001656 ORTHO05D003489 6.1e-80 301.6 222 67.1
Ciclev10000310m.g Citrus clementina HOM05D001656 ORTHO05D003489 8.0e-80 301.2 302 57.0
Glyma.15G049300 Glycine max HOM05D001656 ORTHO05D003489 1.4e-79 300.4 263 59.3
Rhsim01G0193900 Rhododendron simsii HOM05D001656 ORTHO05D003489 2.3e-79 299.7 256 64.1
Glyma.08G077100 Glycine max HOM05D001656 ORTHO05D003489 3.0e-79 299.3 279 56.3
Gohir.D06G027300 Gossypium hirsutum HOM05D001656 ORTHO05D003489 3.0e-79 299.3 218 67.4
EL10Ac3g05154 Beta vulgaris HOM05D001656 ORTHO05D003489 3.9e-79 298.9 217 66.4
Gorai.010G030400 Gossypium raimondii HOM05D001656 ORTHO05D003489 3.9e-79 298.9 216 68.1
Ciclev10000361m.g Citrus clementina HOM05D001656 ORTHO05D003489 5.2e-79 298.5 255 61.6
AUR62005970 Chenopodium quinoa HOM05D001656 ORTHO05D003489 2.6e-78 296.2 213 66.2
AUR62028100 Chenopodium quinoa HOM05D001656 ORTHO05D003489 2.6e-78 296.2 213 66.2
Glyma.08G183400 Glycine max HOM05D001656 ORTHO05D003489 4.4e-78 295.4 277 56.3
Medtr4g094378 Medicago truncatula HOM05D001656 ORTHO05D003489 9.7e-78 294.3 276 55.8
Lj4g0026988 Lotus japonicus HOM05D001656 ORTHO05D003489 4.8e-77 292.0 278 55.4
Phvul.002G204000 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 6.3e-77 291.6 278 55.0
MSTRG.4393 Avicennia marina HOM05D001656 ORTHO05D003489 1.1e-76 290.8 294 53.7
VMungo0251G2951 Vigna mungo HOM05D001656 ORTHO05D003489 1.4e-76 290.4 278 54.3
Ca_18321_v3 Cicer arietinum L. HOM05D001656 ORTHO05D003489 1.8e-76 290.0 279 55.2
Phvul.006G210700 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 1.8e-76 290.0 277 55.2
AT1G58350 Arabidopsis thaliana HOM05D001656 ORTHO05D003489 3.1e-76 289.3 218 67.4
THA.LOC104816780 Tarenaya hassleriana HOM05D001656 ORTHO05D003489 3.1e-76 289.3 219 68.0
Glyma.17G191900 Glycine max HOM05D001656 ORTHO05D003489 4.1e-76 288.9 194 73.2
Cc04_g16130 Coffea canephora HOM05D001656 ORTHO05D003489 7.0e-76 288.1 241 61.8
CSS0033770 Camellia sinensis var. sinensis HOM05D001656 ORTHO05D003489 1.2e-75 287.3 185 74.6
Sabra19G0088800 Salix brachista HOM05D001656 ORTHO05D003489 1.2e-75 287.3 184 75.0
VMungo0540G0892 Vigna mungo HOM05D001656 ORTHO05D003489 1.6e-75 287.0 278 55.8
Carub.0002s0620 Capsella rubella HOM05D001656 ORTHO05D003489 2.6e-75 286.2 220 66.4
Potri.019G077700 Populus trichocarpa HOM05D001656 ORTHO05D003489 5.9e-75 285.0 184 74.5
Medtr1g007420 Medicago truncatula HOM05D001656 ORTHO05D003489 1.3e-74 283.9 241 61.0
THA.LOC104820058 Tarenaya hassleriana HOM05D001656 ORTHO05D003489 1.7e-74 283.5 219 66.7
Aa31LG2G10790 Aethionema arabicum HOM05D001656 ORTHO05D003489 2.9e-74 282.7 263 56.7
Migut.D01892 Erythranthe guttata HOM05D001656 ORTHO05D003489 3.8e-74 282.3 243 57.6
Thhalv10006833m.g Eutrema salsugineum HOM05D001656 ORTHO05D003489 6.5e-74 281.6 218 65.1
AL2G17870 Arabidopsis lyrata HOM05D001656 ORTHO05D003489 8.5e-74 281.2 220 65.9
Lalb_Chr07g0189321 Lupinus albus HOM05D001656 ORTHO05D003489 8.5e-74 281.2 283 52.3
TPR.G23822 Trifolium pratense HOM05D001656 ORTHO05D003489 1.1e-73 280.8 277 53.8
CARHR010100 Cardamine hirsuta HOM05D001656 ORTHO05D003489 1.9e-73 280.0 218 65.1
Carub.0001s0941 Capsella rubella HOM05D001656 ORTHO05D003489 4.2e-73 278.9 218 65.6
Sp2g05240 Schrenkiella parvula HOM05D001656 ORTHO05D003489 4.2e-73 278.9 218 66.5
AL1G20690 Arabidopsis lyrata HOM05D001656 ORTHO05D003489 5.5e-73 278.5 218 65.1
SGA_v2.0_scaffold114G31863 Striga asiatica HOM05D001656 ORTHO05D003489 5.5e-73 278.5 265 54.3
Ca_00099_v3 Cicer arietinum L. HOM05D001656 ORTHO05D003489 7.2e-73 278.1 277 52.3
Psat7g095680 Pisum sativum HOM05D001656 ORTHO05D003489 7.2e-73 278.1 279 53.0
Sp1g08640 Schrenkiella parvula HOM05D001656 ORTHO05D003489 7.2e-73 278.1 218 64.2
Sc13g0010550 Simmondsia chinensis HOM05D001656 ORTHO05D003489 7.2e-73 278.1 185 72.4
BraA09t37464Z Brassica rapa HOM05D001656 ORTHO05D003489 9.4e-73 277.7 272 56.6
Lalb_Chr11g0064671 Lupinus albus HOM05D001656 ORTHO05D003489 9.4e-73 277.7 193 70.5
BcaC07g41848 Brassica carinata HOM05D001656 ORTHO05D003489 2.1e-72 276.6 221 63.8
BolC8t52452H Brassica oleracea HOM05D001656 ORTHO05D003489 2.1e-72 276.6 221 63.8
A09p18330 Brassica napus HOM05D001656 ORTHO05D003489 3.6e-72 275.8 273 56.0
Phvul.001G063050 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 3.6e-72 275.8 183 73.2
AT1G09980 Arabidopsis thaliana HOM05D001656 ORTHO05D003489 4.7e-72 275.4 218 64.2
unitig_744.g24393 Utricularia gibba HOM05D001656 ORTHO05D003489 4.7e-72 275.4 187 69.0
VMungo0647G0957 Vigna mungo HOM05D001656 ORTHO05D003489 8.0e-72 274.6 183 72.7
Zm00001eb407660 Zea mays HOM05D001656 ORTHO05D003489 8.0e-72 274.6 242 57.4
BcaC04g22145 Brassica carinata HOM05D001656 ORTHO05D003489 1.0e-71 274.2 271 56.1
A06p06680 Brassica napus HOM05D001656 ORTHO05D003489 1.0e-71 274.2 221 63.3
Lalb_Chr18g0060791 Lupinus albus HOM05D001656 ORTHO05D003489 1.8e-71 273.5 273 54.9
C08p49170 Brassica napus HOM05D001656 ORTHO05D003489 3.0e-71 272.7 221 63.3
Atru.chr13.918 Acer truncatum HOM05D001656 ORTHO05D003489 4.0e-71 272.3 187 72.2
C09p22870 Brassica napus HOM05D001656 ORTHO05D003489 4.0e-71 272.3 272 55.5
BolC9t55207H Brassica oleracea HOM05D001656 ORTHO05D003489 4.0e-71 272.3 272 55.5
BcaC05g24823 Brassica carinata HOM05D001656 ORTHO05D003489 5.2e-71 271.9 222 62.6
Gohir.D06G026800 Gossypium hirsutum HOM05D001656 ORTHO05D003489 6.7e-71 271.6 218 64.2
Sabra13G0090300 Salix brachista HOM05D001656 ORTHO05D003489 6.7e-71 271.6 252 57.5
A09p65220 Brassica napus HOM05D001656 ORTHO05D003489 8.8e-71 271.2 218 63.8
BraA09t41867Z Brassica rapa HOM05D001656 ORTHO05D003489 8.8e-71 271.2 218 63.8
Thhalv10023308m.g Eutrema salsugineum HOM05D001656 ORTHO05D003489 8.8e-71 271.2 218 64.7
Lj1g0003271 Lotus japonicus HOM05D001656 ORTHO05D003489 8.8e-71 271.2 245 56.7
Gohir.D05G217800 Gossypium hirsutum HOM05D001656 ORTHO05D003489 1.5e-70 270.4 188 69.1
Gorai.009G224600 Gossypium raimondii HOM05D001656 ORTHO05D003489 1.5e-70 270.4 188 69.1
C05p08150 Brassica napus HOM05D001656 ORTHO05D003489 2.0e-70 270.0 223 61.9
BolC5t29567H Brassica oleracea HOM05D001656 ORTHO05D003489 2.0e-70 270.0 223 61.9
BraA06t23882Z Brassica rapa HOM05D001656 ORTHO05D003489 3.3e-70 269.2 221 62.4
Lalb_Chr23g0269821 Lupinus albus HOM05D001656 ORTHO05D003489 4.4e-70 268.9 195 67.2
Potri.013G104400 Populus trichocarpa HOM05D001656 ORTHO05D003489 4.4e-70 268.9 252 56.7
SalBow3G0204 Salvia bowleyana HOM05D001656 ORTHO05D003489 5.7e-70 268.5 168 75.0
Cpa.g.sc160.10 Carica papaya HOM05D001656 ORTHO05D003489 7.5e-70 268.1 185 70.8
Manes.18G053500 Manihot esculenta HOM05D001656 ORTHO05D003489 7.5e-70 268.1 181 73.5
Migut.I00076 Erythranthe guttata HOM05D001656 ORTHO05D003489 9.7e-70 267.7 185 67.0
Psat2g123240 Pisum sativum HOM05D001656 ORTHO05D003489 1.7e-69 266.9 241 56.4
Hund09724 Selenicereus undatus HOM05D001656 ORTHO05D003489 1.7e-69 266.9 241 58.5
SalBow5G0425 Salvia bowleyana HOM05D001656 ORTHO05D003489 2.8e-69 266.2 229 61.1
TPR.G12394 Trifolium pratense HOM05D001656 ORTHO05D003489 3.7e-69 265.8 193 67.9
Os12g0164800 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D003489 6.3e-69 265.0 237 55.3
Lj6g0015393 Lotus japonicus HOM05D001656 ORTHO05D003489 1.1e-68 264.2 277 52.0
Glyma.04G088300 Glycine max HOM05D001656 ORTHO05D003489 1.2e-67 260.8 184 68.5
Aa31LG1G4900 Aethionema arabicum HOM05D001656 ORTHO05D003489 2.7e-67 259.6 225 60.4
Glyma.06G090300 Glycine max HOM05D001656 ORTHO05D003489 3.5e-67 259.2 199 63.8
arahy.Tifrunner.gnm1.ann1.MCUW0T Arachis hypogaea HOM05D001656 ORTHO05D003489 3.8e-66 255.8 273 52.7
Manes.05G186300 Manihot esculenta HOM05D001656 ORTHO05D003489 6.5e-66 255.0 184 67.4
arahy.Tifrunner.gnm1.ann1.EW8P9I Arachis hypogaea HOM05D001656 ORTHO05D003489 1.1e-65 254.2 278 51.1
VMungo1309G1010 Vigna mungo HOM05D001656 ORTHO05D003489 5.5e-65 251.9 185 68.1
arahy.Tifrunner.gnm1.ann1.0H8WKK Arachis hypogaea HOM05D001656 ORTHO05D003489 2.7e-64 249.6 278 50.0
arahy.Tifrunner.gnm1.ann1.AB9876 Arachis hypogaea HOM05D001656 ORTHO05D003489 2.7e-64 249.6 216 59.7
Medtr3g110690 Medicago truncatula HOM05D001656 ORTHO05D003489 3.0e-63 246.1 186 65.6
Phvul.009G113900 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 1.3e-61 240.7 174 68.4
Gohir.A05G214500 Gossypium hirsutum HOM05D001656 ORTHO05D003489 8.6e-58 228.0 164 67.1
Haze_19010 Corylus avellana HOM05D001656 ORTHO05D003489 2.1e-56 223.4 139 78.4
ECA238G2565 Erigeron canadensis HOM05D001656 ORTHO05D003489 1.0e-55 221.1 156 70.5
Nitab4.5_0000642g0240 Nicotiana tabacum HOM05D001656 ORTHO05D003489 2.0e-54 216.9 135 77.0
COL.COLO4_35358 Corchorus olitorius HOM05D001656 ORTHO05D003489 2.8e-53 213.0 170 64.1
SEGI_30798 Sequoiadendron giganteum HOM05D001656 ORTHO05D003489 1.1e-49 201.1 160 60.6
Oeu041590.1 Olea europaea HOM05D001656 ORTHO05D003489 3.3e-49 199.5 249 49.8
TPR.G24499 Trifolium pratense HOM05D001656 ORTHO05D003489 2.8e-48 196.4 184 57.1
DCAR_005504 Daucus carota HOM05D001656 ORTHO05D003489 5.8e-46 188.7 138 68.1
Cpa.g.sc2.34 Carica papaya HOM05D001656 ORTHO05D003489 5.4e-44 182.2 147 60.5
SHI20938 Sapria himalayana HOM05D001656 ORTHO05D003489 1.2e-43 181.0 139 64.0
AagrBONN_evm.TU.Sc2ySwM_362.276 Anthoceros agrestis HOM05D001656 ORTHO05D003489 8.6e-42 174.9 179 49.7
SMO353G0380 Selaginella moellendorffii HOM05D001656 ORTHO05D003489 4.9e-37 159.1 182 42.9
Ah.07g204550 Amaranthus hybridus HOM05D001656 ORTHO05D003489 6.4e-37 158.7 213 39.9
Zm00001eb202450 Zea mays HOM05D001656 ORTHO05D003489 7.0e-36 155.2 142 56.3
arahy.Tifrunner.gnm1.ann1.G0H17A Arachis hypogaea HOM05D001656 ORTHO05D003489 1.1e-31 141.4 124 57.3
CBR_g50209 Chara braunii HOM05D001656 ORTHO05D003489 3.4e-30 136.3 166 39.8
Lsat_1_v5_gn_5_90280 Lactuca sativa HOM05D001656 ORTHO05D003489 3.7e-29 132.9 174 45.4
Gohir.D06G025900 Gossypium hirsutum HOM05D001656 ORTHO05D003489 2.3e-26 123.6 91 65.9
Ca_03352_v3 Cicer arietinum L. HOM05D001656 ORTHO05D003489 3.0e-26 123.2 83 71.1
GSVIVG01014971001 Vitis vinifera HOM05D001656 ORTHO05D003489 3.0e-26 123.2 86 69.8
Ca_15557_v3 Cicer arietinum L. HOM05D001656 ORTHO05D003489 1.5e-25 120.9 108 53.7
arahy.Tifrunner.gnm1.ann1.GQ6E1B Arachis hypogaea HOM05D001656 ORTHO05D003489 2.1e-19 100.5 89 53.9
Gohir.D06G026833 Gossypium hirsutum HOM05D001656 ORTHO05D003489 2.0e-14 84.0 56 66.1
arahy.Tifrunner.gnm1.ann1.Z08EY9 Arachis hypogaea HOM05D001656 ORTHO05D003489 1.3e-13 81.3 53 71.7
Cpa.g.sc2.37 Carica papaya HOM05D001656 ORTHO05D003489 1.9e-12 77.4 48 75.0
arahy.Tifrunner.gnm1.ann1.8G9HNR Arachis hypogaea HOM05D001656 ORTHO05D003489 1.0e-10 71.6 79 49.4
Lsat_1_v5_gn_1_25940 Lactuca sativa HOM05D001656 ORTHO05D003489 1.3e-10 71.2 73 47.9
arahy.Tifrunner.gnm1.ann1.8YJD6A Arachis hypogaea HOM05D001656 ORTHO05D003489 1.6e-08 64.3 72 44.4
SHI20937 Sapria himalayana HOM05D001656 ORTHO05D003489 4.8e-08 62.8 53 52.8
MBI17_g25901_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D003489 1.1e-07 61.6 55 61.8


User provided reference genes

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