Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR231G0004 Trochodendron aralioides HOM05D005656 ORTHO05D007094 2.5e-127 458.8 227 100.0
Nn3g16535 Nelumbo nucifera HOM05D005656 ORTHO05D007094 7.8e-12 75.1 93 50.5
FvH4_6g52980 Fragaria vesca HOM05D005656 ORTHO05D007094 6.2e-09 65.5 122 38.5
FAN14G1288 Fragaria x ananassa HOM05D005656 ORTHO05D007094 8.0e-09 65.1 86 46.5
AUR62041797 Chenopodium quinoa HOM05D005656 ORTHO05D007094 1.0e-08 64.7 124 37.9
Hund06758 Selenicereus undatus HOM05D005656 ORTHO05D007094 1.0e-08 64.7 124 37.9
ATR0824G269 Amborella trichopoda HOM05D005656 ORTHO05D007094 1.4e-08 64.3 119 38.7
Sabra17G0061100 Salix brachista HOM05D005656 ORTHO05D007094 1.4e-08 64.3 122 37.7
Ah.04g163580 Amaranthus hybridus HOM05D005656 ORTHO05D007094 1.8e-08 63.9 124 36.3
MSTRG.24081 Avicennia marina HOM05D005656 ORTHO05D007094 1.8e-08 63.9 122 39.3
Ca_04416_v3 Cicer arietinum L. HOM05D005656 ORTHO05D007094 1.8e-08 63.9 167 32.3
Gohir.A11G064700 Gossypium hirsutum HOM05D005656 ORTHO05D007094 1.8e-08 63.9 119 39.5
Gohir.D11G069000 Gossypium hirsutum HOM05D005656 ORTHO05D007094 1.8e-08 63.9 119 39.5
Gorai.007G073800 Gossypium raimondii HOM05D005656 ORTHO05D007094 1.8e-08 63.9 119 39.5
TAR629G1348 Trochodendron aralioides HOM05D005656 ORTHO05D007094 1.8e-08 63.9 122 39.3
Potri.017G066500 Populus trichocarpa HOM05D005656 ORTHO05D007094 2.3e-08 63.5 122 37.7
Sc03g0006840 Simmondsia chinensis HOM05D005656 ORTHO05D007094 2.3e-08 63.5 119 37.8
TAR371G0943 Trochodendron aralioides HOM05D005656 ORTHO05D007094 2.3e-08 63.5 122 38.5
TAR374G1035 Trochodendron aralioides HOM05D005656 ORTHO05D007094 2.3e-08 63.5 122 38.5
CAN.G1780.2 Capsicum annuum HOM05D005656 ORTHO05D007094 3.1e-08 63.2 155 32.9
Peaxi162Scf00080g00211 Petunia axillaris HOM05D005656 ORTHO05D007094 3.1e-08 63.2 122 37.7
Actinidia36179 Actinidia chinensis HOM05D005656 ORTHO05D007094 4.0e-08 62.8 122 37.7
COL.COLO4_08768 Corchorus olitorius HOM05D005656 ORTHO05D007094 4.0e-08 62.8 119 38.7
Nitab4.5_0000040g0420 Nicotiana tabacum HOM05D005656 ORTHO05D007094 4.0e-08 62.8 122 37.7
Oeu013956.6 Olea europaea HOM05D005656 ORTHO05D007094 4.0e-08 62.8 122 37.7
PGR142G1770 Punica granatum HOM05D005656 ORTHO05D007094 4.0e-08 62.8 122 36.9
Thecc.04G029600 Theobroma cacao HOM05D005656 ORTHO05D007094 4.0e-08 62.8 119 38.7
Actinidia05925 Actinidia chinensis HOM05D005656 ORTHO05D007094 5.2e-08 62.4 122 37.7
Aqoxy5G03503 Aquilegia oxysepala HOM05D005656 ORTHO05D007094 5.2e-08 62.4 119 37.8
CSS0001925 Camellia sinensis var. sinensis HOM05D005656 ORTHO05D007094 5.2e-08 62.4 122 37.7
CSS0043551 Camellia sinensis var. sinensis HOM05D005656 ORTHO05D007094 5.2e-08 62.4 122 37.7
Cpa.g.sc130.11 Carica papaya HOM05D005656 ORTHO05D007094 5.2e-08 62.4 122 37.7
Cfa007258 Carpinus fangiana HOM05D005656 ORTHO05D007094 5.2e-08 62.4 122 37.7
Haze_14830 Corylus avellana HOM05D005656 ORTHO05D007094 5.2e-08 62.4 122 36.9
Dinv25681 Davidia involucrata HOM05D005656 ORTHO05D007094 5.2e-08 62.4 122 37.7
Gohir.D04G079100 Gossypium hirsutum HOM05D005656 ORTHO05D007094 5.2e-08 62.4 119 37.8
Gorai.012G089000 Gossypium raimondii HOM05D005656 ORTHO05D007094 5.2e-08 62.4 119 37.8
Lju41A49G67 Lonicera japonica HOM05D005656 ORTHO05D007094 5.2e-08 62.4 122 37.7
MD09G1015500 Malus domestica HOM05D005656 ORTHO05D007094 5.2e-08 62.4 122 37.7
Manes.15G157800 Manihot esculenta HOM05D005656 ORTHO05D007094 5.2e-08 62.4 122 37.7
Solyc02g068050.4 Solanum lycopersicum HOM05D005656 ORTHO05D007094 5.2e-08 62.4 122 37.7
Sopen02g017160 Solanum pennellii HOM05D005656 ORTHO05D007094 5.2e-08 62.4 122 37.7
PGSC0003DMG400006974 Solanum tuberosum HOM05D005656 ORTHO05D007094 5.2e-08 62.4 122 37.7
SGA_v2.0_scaffold135G34966 Striga asiatica HOM05D005656 ORTHO05D007094 5.2e-08 62.4 122 37.7
vmacro05935 Vaccinium macrocarpon HOM05D005656 ORTHO05D007094 5.2e-08 62.4 122 37.7
Lalb_Chr02g0157861 Lupinus albus HOM05D005656 ORTHO05D007094 6.8e-08 62.0 122 37.7
Lalb_Chr06g0174321 Lupinus albus HOM05D005656 ORTHO05D007094 6.8e-08 62.0 122 37.7
GSVIVG01001828001 Vitis vinifera HOM05D005656 ORTHO05D007094 6.8e-08 62.0 122 36.9
Nitab4.5_0002911g0050 Nicotiana tabacum HOM05D005656 ORTHO05D007094 8.9e-08 61.6 122 36.9
HPP92_024278 Vanilla planifolia HOM05D005656 ORTHO05D007094 8.9e-08 61.6 119 37.0
CANSAT64G1678 Cannabis sativa HOM05D005656 ORTHO05D007094 1.2e-07 61.2 122 37.7
Ciclev10014955m.g Citrus clementina HOM05D005656 ORTHO05D007094 1.2e-07 61.2 122 37.7
Duzib264G0552 Durio zibethinus HOM05D005656 ORTHO05D007094 1.2e-07 61.2 119 37.8
MD17G1015800 Malus domestica HOM05D005656 ORTHO05D007094 1.2e-07 61.2 122 36.9
Cc07_g00550 Coffea canephora HOM05D005656 ORTHO05D007094 1.5e-07 60.8 121 37.2
Eucgr.I01666 Eucalyptus grandis HOM05D005656 ORTHO05D007094 1.5e-07 60.8 122 36.1
Lj2g0013537 Lotus japonicus HOM05D005656 ORTHO05D007094 1.5e-07 60.8 122 34.4
Pp3c3_30340 Physcomitrium patens HOM05D005656 ORTHO05D007094 1.5e-07 60.8 120 35.0
Atru.chr6.2507 Acer truncatum HOM05D005656 ORTHO05D007094 2.0e-07 60.5 122 36.9
ClCG05G013280 Citrullus lanatus HOM05D005656 ORTHO05D007094 2.0e-07 60.5 122 36.1
MELO3C014861.2 Cucumis melo HOM05D005656 ORTHO05D007094 2.0e-07 60.5 122 36.1
CsaV3_3G027250 Cucumis sativus L. HOM05D005656 ORTHO05D007094 2.0e-07 60.5 122 36.1
DCAR_002954 Daucus carota HOM05D005656 ORTHO05D007094 2.0e-07 60.5 122 36.1
Lsat_1_v5_gn_4_185500 Lactuca sativa HOM05D005656 ORTHO05D007094 2.0e-07 60.5 122 36.9
Os12g0236900 Oryza sativa ssp. japonica HOM05D005656 ORTHO05D007094 2.0e-07 60.5 122 36.1
TPR.G7527 Trifolium pratense HOM05D005656 ORTHO05D007094 2.0e-07 60.5 167 32.9
TAR362G0771 Trochodendron aralioides HOM05D005656 ORTHO05D007094 2.6e-07 60.1 91 42.9
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 3.4e-07 59.7 214 30.4
CiPaw.03G052000 Carya illinoinensis HOM05D005656 ORTHO05D007094 3.4e-07 59.7 122 36.9
Mapoly0008s0037 Marchantia polymorpha HOM05D005656 ORTHO05D007094 3.4e-07 59.7 120 35.0
Medtr6g023320 Medicago truncatula HOM05D005656 ORTHO05D007094 3.4e-07 59.7 167 32.9
PSO063G4854 Papaver somniferum HOM05D005656 ORTHO05D007094 3.4e-07 59.7 122 36.9
PSO782G5211 Papaver somniferum HOM05D005656 ORTHO05D007094 3.4e-07 59.7 122 36.9
Psat1g084760 Pisum sativum HOM05D005656 ORTHO05D007094 3.4e-07 59.7 119 35.3
Prupe.3G302300 Prunus persica HOM05D005656 ORTHO05D007094 3.4e-07 59.7 122 36.9
Sed0013971 Sechium edule HOM05D005656 ORTHO05D007094 3.4e-07 59.7 122 36.9
Sed0022605 Sechium edule HOM05D005656 ORTHO05D007094 3.4e-07 59.7 122 36.9
CDE09G0728 Ceratophyllum demersum HOM05D005656 ORTHO05D007094 4.4e-07 59.3 122 36.9
Dinv33371 Davidia involucrata HOM05D005656 ORTHO05D007094 4.4e-07 59.3 120 36.7
QL02p072623 Quercus lobata HOM05D005656 ORTHO05D007094 4.4e-07 59.3 122 37.7
TWI36G1388 Tripterygium wilfordii HOM05D005656 ORTHO05D007094 4.4e-07 59.3 119 37.0
arahy.Tifrunner.gnm1.ann1.2KKI49 Arachis hypogaea HOM05D005656 ORTHO05D007094 5.8e-07 58.9 122 36.9
arahy.Tifrunner.gnm1.ann1.39JT4A Arachis hypogaea HOM05D005656 ORTHO05D007094 5.8e-07 58.9 122 36.9
BcaB08g36978 Brassica carinata HOM05D005656 ORTHO05D007094 7.5e-07 58.5 165 32.1
CBR_g368 Chara braunii HOM05D005656 ORTHO05D007094 7.5e-07 58.5 120 33.3
Glyma.05G074800 Glycine max HOM05D005656 ORTHO05D007094 7.5e-07 58.5 122 36.9
Phvul.004G056200 Phaseolus vulgaris HOM05D005656 ORTHO05D007094 7.5e-07 58.5 122 36.9
TAR362G1284 Trochodendron aralioides HOM05D005656 ORTHO05D007094 9.8e-07 58.2 107 38.3
SMO164G0150 Selaginella moellendorffii HOM05D005656 ORTHO05D007094 1.3e-06 57.8 120 35.0
BcaNung03171 Brassica carinata HOM05D005656 ORTHO05D007094 1.7e-06 57.4 119 33.6
Pp3c10_18400 Physcomitrium patens HOM05D005656 ORTHO05D007094 1.7e-06 57.4 120 34.2
Aa31LG11G15050 Aethionema arabicum HOM05D005656 ORTHO05D007094 2.2e-06 57.0 119 34.5
Glyma.19G076300 Glycine max HOM05D005656 ORTHO05D007094 2.2e-06 57.0 122 34.4
AL6G24940 Arabidopsis lyrata HOM05D005656 ORTHO05D007094 2.9e-06 56.6 167 29.9
AT5G14260 Arabidopsis thaliana HOM05D005656 ORTHO05D007094 2.9e-06 56.6 167 29.9
Carub.0006s1246 Capsella rubella HOM05D005656 ORTHO05D007094 2.9e-06 56.6 167 29.9
CARHR199080 Cardamine hirsuta HOM05D005656 ORTHO05D007094 2.9e-06 56.6 167 31.1
Rhsim10G0009000 Rhododendron simsii HOM05D005656 ORTHO05D007094 2.9e-06 56.6 141 31.9
Sp6g29770 Schrenkiella parvula HOM05D005656 ORTHO05D007094 2.9e-06 56.6 167 29.9
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 3.7e-06 56.2 119 34.5
BraA02t05211Z Brassica rapa HOM05D005656 ORTHO05D007094 3.7e-06 56.2 119 34.5
Thhalv10013274m.g Eutrema salsugineum HOM05D005656 ORTHO05D007094 3.7e-06 56.2 167 31.1
HanXRQChr09g0256021 Helianthus annuus HOM05D005656 ORTHO05D007094 3.7e-06 56.2 119 37.0
ECA232G3800 Erigeron canadensis HOM05D005656 ORTHO05D007094 4.9e-06 55.8 119 34.5
BcaB08g36971 Brassica carinata HOM05D005656 ORTHO05D007094 6.4e-06 55.5 167 29.9
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 6.4e-06 55.5 167 29.9
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 6.4e-06 55.5 167 29.9
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 6.4e-06 55.5 167 29.9
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 6.4e-06 55.5 167 29.9
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 6.4e-06 55.5 167 29.9


User provided reference genes

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