Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR209G0006 Trochodendron aralioides HOM05D002034 ORTHO05D004251 2.3e-125 452.2 220 100.0
TAR369G0522 Trochodendron aralioides HOM05D002034 ORTHO05D004251 5.1e-109 397.9 263 78.7
Dinv28678 Davidia involucrata HOM05D002034 ORTHO05D004251 5.8e-81 304.7 237 66.7
Nn2g10970 Nelumbo nucifera HOM05D002034 ORTHO05D004251 3.0e-77 292.4 264 59.8
CiPaw.13G071900 Carya illinoinensis HOM05D002034 ORTHO05D004251 3.9e-77 292.0 264 60.2
QL01p039781 Quercus lobata HOM05D002034 ORTHO05D004251 4.3e-76 288.5 263 59.3
Haze_24388 Corylus avellana HOM05D002034 ORTHO05D004251 5.7e-76 288.1 264 59.5
Rhsim13G0065900 Rhododendron simsii HOM05D002034 ORTHO05D004251 4.8e-75 285.0 264 57.6
CSS0000627 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 6.3e-75 284.6 264 57.6
GSVIVG01024678001 Vitis vinifera HOM05D002034 ORTHO05D004251 1.1e-74 283.9 264 58.0
Actinidia32621 Actinidia chinensis HOM05D002034 ORTHO05D004251 1.4e-74 283.5 223 65.0
CsaV3_1G036460 Cucumis sativus L. HOM05D002034 ORTHO05D004251 3.1e-74 282.3 264 56.4
ClCG03G000460 Citrullus lanatus HOM05D002034 ORTHO05D004251 4.1e-74 282.0 264 57.2
CSS0015957 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 5.3e-74 281.6 264 57.2
Actinidia23213 Actinidia chinensis HOM05D002034 ORTHO05D004251 9.0e-74 280.8 264 57.2
PSO339G3538 Papaver somniferum HOM05D002034 ORTHO05D004251 9.0e-74 280.8 264 57.6
MD11G1065500 Malus domestica HOM05D002034 ORTHO05D004251 1.2e-73 280.4 264 56.4
Ciclev10027766m.g Citrus clementina HOM05D002034 ORTHO05D004251 2.6e-73 279.3 264 55.7
Prupe.6G051700 Prunus persica HOM05D002034 ORTHO05D004251 4.5e-73 278.5 264 56.4
MELO3C020522.2 Cucumis melo HOM05D002034 ORTHO05D004251 7.6e-73 277.7 264 56.1
PSO801G0069 Papaver somniferum HOM05D002034 ORTHO05D004251 1.7e-72 276.6 264 56.4
Hma1.2p1_0841F.1_g226850 Hydrangea macrophylla HOM05D002034 ORTHO05D004251 2.2e-72 276.2 264 57.6
Sed0002046 Sechium edule HOM05D002034 ORTHO05D004251 3.8e-72 275.4 264 55.3
Atru.chr3.4154 Acer truncatum HOM05D002034 ORTHO05D004251 5.0e-72 275.0 263 57.0
Manes.02G215950 Manihot esculenta HOM05D002034 ORTHO05D004251 5.0e-72 275.0 264 56.8
Cpa.g.sc2.385 Carica papaya HOM05D002034 ORTHO05D004251 6.5e-72 274.6 264 55.3
vmacro02934 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 6.5e-72 274.6 264 56.8
Eucgr.B02225 Eucalyptus grandis HOM05D002034 ORTHO05D004251 1.4e-71 273.5 264 55.7
Glyma.18G058700 Glycine max HOM05D002034 ORTHO05D004251 1.4e-71 273.5 264 56.8
Psat5g155480 Pisum sativum HOM05D002034 ORTHO05D004251 2.5e-71 272.7 264 56.1
TPR.G32915 Trifolium pratense HOM05D002034 ORTHO05D004251 2.5e-71 272.7 264 56.1
Aqoxy2G00822 Aquilegia oxysepala HOM05D002034 ORTHO05D004251 3.2e-71 272.3 264 56.1
FAN25G3060 Fragaria x ananassa HOM05D002034 ORTHO05D004251 7.2e-71 271.2 264 55.3
Sabra09G0057900 Salix brachista HOM05D002034 ORTHO05D004251 7.2e-71 271.2 266 56.0
Ca_14990_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 9.3e-71 270.8 265 56.2
Ca_30101_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 9.3e-71 270.8 265 56.2
RcHm_v2.0_Chr5g0070931 Rosa chinensis HOM05D002034 ORTHO05D004251 9.3e-71 270.8 264 54.2
CANSAT54G3012 Cannabis sativa HOM05D002034 ORTHO05D004251 3.6e-70 268.9 265 55.8
Thecc.09G354800 Theobroma cacao HOM05D002034 ORTHO05D004251 3.6e-70 268.9 269 55.4
COL.COLO4_11121 Corchorus olitorius HOM05D002034 ORTHO05D004251 6.1e-70 268.1 265 55.8
Duzib168G1938 Durio zibethinus HOM05D002034 ORTHO05D004251 7.9e-70 267.7 264 55.7
TWI31G1212 Tripterygium wilfordii HOM05D002034 ORTHO05D004251 7.9e-70 267.7 265 55.8
FAN11G3897 Fragaria x ananassa HOM05D002034 ORTHO05D004251 1.0e-69 267.3 264 54.9
Potri.009G076000 Populus trichocarpa HOM05D002034 ORTHO05D004251 1.0e-69 267.3 266 54.9
Medtr3g465600 Medicago truncatula HOM05D002034 ORTHO05D004251 2.3e-69 266.2 264 55.7
FAN16G1479 Fragaria x ananassa HOM05D002034 ORTHO05D004251 3.9e-69 265.4 264 54.5
Glyma.11G165900 Glycine max HOM05D002034 ORTHO05D004251 3.9e-69 265.4 264 55.3
Lj6g0001278 Lotus japonicus HOM05D002034 ORTHO05D004251 5.1e-69 265.0 264 56.1
Sc12g0000270 Simmondsia chinensis HOM05D002034 ORTHO05D004251 1.1e-68 263.8 266 54.1
PGSC0003DMG400030372 Solanum tuberosum HOM05D002034 ORTHO05D004251 1.9e-68 263.1 264 53.0
Cc01_g14670 Coffea canephora HOM05D002034 ORTHO05D004251 4.3e-68 261.9 267 54.7
Duzib150G0116 Durio zibethinus HOM05D002034 ORTHO05D004251 4.3e-68 261.9 264 54.5
Solyc06g082200.4 Solanum lycopersicum HOM05D002034 ORTHO05D004251 5.7e-68 261.5 264 52.7
CAN.G1095.17 Capsicum annuum HOM05D002034 ORTHO05D004251 7.4e-68 261.2 240 56.2
ECA247G1661 Erigeron canadensis HOM05D002034 ORTHO05D004251 1.6e-67 260.0 266 52.6
Sopen06g033580 Solanum pennellii HOM05D002034 ORTHO05D004251 2.2e-67 259.6 264 52.3
Lalb_Chr15g0083131 Lupinus albus HOM05D002034 ORTHO05D004251 4.8e-67 258.5 264 53.4
HanXRQChr08g0229181 Helianthus annuus HOM05D002034 ORTHO05D004251 8.2e-67 257.7 265 52.5
DCAR_018219 Daucus carota HOM05D002034 ORTHO05D004251 6.9e-66 254.6 262 52.7
MSTRG.8115 Avicennia marina HOM05D002034 ORTHO05D004251 1.2e-65 253.8 264 51.9
Migut.F01663 Erythranthe guttata HOM05D002034 ORTHO05D004251 3.4e-65 252.3 266 50.4
Phvul.006G072400 Phaseolus vulgaris HOM05D002034 ORTHO05D004251 4.5e-65 251.9 265 53.6
Gohir.D03G141700 Gossypium hirsutum HOM05D002034 ORTHO05D004251 5.9e-65 251.5 264 51.5
PGR102G2830 Punica granatum HOM05D002034 ORTHO05D004251 1.3e-64 250.4 265 51.3
Gorai.003G148700 Gossypium raimondii HOM05D002034 ORTHO05D004251 2.2e-64 249.6 264 51.9
Gorai.013G270500 Gossypium raimondii HOM05D002034 ORTHO05D004251 2.2e-64 249.6 268 53.4
Ah.15g096250 Amaranthus hybridus HOM05D002034 ORTHO05D004251 2.9e-64 249.2 264 53.0
Nitab4.5_0004155g0040 Nicotiana tabacum HOM05D002034 ORTHO05D004251 2.9e-64 249.2 264 50.4
Gohir.A03G026800 Gossypium hirsutum HOM05D002034 ORTHO05D004251 3.8e-64 248.8 264 51.5
Peaxi162Scf00390g00823 Petunia axillaris HOM05D002034 ORTHO05D004251 3.8e-64 248.8 264 51.1
Gohir.A13G234000 Gossypium hirsutum HOM05D002034 ORTHO05D004251 5.0e-64 248.4 268 53.0
Lalb_Chr04g0252081 Lupinus albus HOM05D002034 ORTHO05D004251 5.0e-64 248.4 265 52.8
Gohir.D13G239600 Gossypium hirsutum HOM05D002034 ORTHO05D004251 8.5e-64 247.7 268 53.0
VMungo0540G1016 Vigna mungo HOM05D002034 ORTHO05D004251 2.5e-63 246.1 264 52.3
Os03g0295700 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D004251 5.5e-63 245.0 262 52.3
Nitab4.5_0006148g0070 Nicotiana tabacum HOM05D002034 ORTHO05D004251 7.2e-63 244.6 264 50.0
AUR62009695 Chenopodium quinoa HOM05D002034 ORTHO05D004251 1.6e-62 243.4 264 50.0
arahy.Tifrunner.gnm1.ann1.RZ6BDN Arachis hypogaea HOM05D002034 ORTHO05D004251 1.0e-61 240.7 265 51.7
Lsat_1_v5_gn_9_18521 Lactuca sativa HOM05D002034 ORTHO05D004251 3.9e-61 238.8 270 50.7
ATR0174G009 Amborella trichopoda HOM05D002034 ORTHO05D004251 6.7e-61 238.0 265 52.1
arahy.Tifrunner.gnm1.ann1.WA30K5 Arachis hypogaea HOM05D002034 ORTHO05D004251 6.7e-61 238.0 265 50.9
Peaxi162Scf00808g00011 Petunia axillaris HOM05D002034 ORTHO05D004251 8.8e-61 237.7 264 50.0
Zm00001eb396860 Zea mays HOM05D002034 ORTHO05D004251 2.2e-59 233.0 263 51.3
THA.LOC104799388 Tarenaya hassleriana HOM05D002034 ORTHO05D004251 8.2e-59 231.1 271 49.4
arahy.Tifrunner.gnm1.ann1.H18R60 Arachis hypogaea HOM05D002034 ORTHO05D004251 1.1e-58 230.7 264 48.5
unitig_736.g22533 Utricularia gibba HOM05D002034 ORTHO05D004251 4.1e-58 228.8 268 47.4
Thhalv10012586m.g Eutrema salsugineum HOM05D002034 ORTHO05D004251 5.3e-58 228.4 273 49.5
AT5G58510 Arabidopsis thaliana HOM05D002034 ORTHO05D004251 9.1e-58 227.6 274 49.6
BcaB08g36187 Brassica carinata HOM05D002034 ORTHO05D004251 9.1e-58 227.6 274 50.0
AL8G34750 Arabidopsis lyrata HOM05D002034 ORTHO05D004251 1.5e-57 226.9 273 49.5
Carub.0008s1910 Capsella rubella HOM05D002034 ORTHO05D004251 2.0e-57 226.5 274 49.3
Lj1C128T10 Lonicera japonica HOM05D002034 ORTHO05D004251 2.0e-57 226.5 163 69.9
EL10Ac7g15893 Beta vulgaris HOM05D002034 ORTHO05D004251 5.9e-57 224.9 264 48.9
Sp6g20200 Schrenkiella parvula HOM05D002034 ORTHO05D004251 5.9e-57 224.9 274 50.0
Aa31LG11G290 Aethionema arabicum HOM05D002034 ORTHO05D004251 2.2e-56 223.0 281 47.0
arahy.Tifrunner.gnm1.ann1.Z7E5WK Arachis hypogaea HOM05D002034 ORTHO05D004251 2.9e-56 222.6 289 44.6
Nitab4.5_0001469g0010 Nicotiana tabacum HOM05D002034 ORTHO05D004251 2.9e-56 222.6 277 47.7
MSTRG.9115 Avicennia marina HOM05D002034 ORTHO05D004251 5.0e-56 221.9 265 46.0
C09p50470 Brassica napus HOM05D002034 ORTHO05D004251 6.5e-56 221.5 274 49.3
Cfa011749 Carpinus fangiana HOM05D002034 ORTHO05D004251 1.9e-55 219.9 172 66.9
BolC9t57903H Brassica oleracea HOM05D002034 ORTHO05D004251 2.5e-55 219.5 275 49.1
BraA10t43651Z Brassica rapa HOM05D002034 ORTHO05D004251 1.2e-54 217.2 275 48.4
BolC3t13874H Brassica oleracea HOM05D002034 ORTHO05D004251 3.6e-54 215.7 274 45.6
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 1.0e-53 214.2 270 46.7
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 1.0e-53 214.2 270 46.7
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 1.1e-52 210.7 274 47.4
SEGI_18638 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 1.5e-52 210.3 264 45.5
HPP92_012002 Vanilla planifolia HOM05D002034 ORTHO05D004251 2.4e-50 203.0 169 62.7
SGA_v2.0_scaffold62G21324 Striga asiatica HOM05D002034 ORTHO05D004251 2.1e-46 189.9 243 44.0
BcaB01g04520 Brassica carinata HOM05D002034 ORTHO05D004251 3.6e-46 189.1 231 46.8
AUR62036251 Chenopodium quinoa HOM05D002034 ORTHO05D004251 1.7e-43 180.3 170 55.3
AUR62036252 Chenopodium quinoa HOM05D002034 ORTHO05D004251 1.7e-43 180.3 170 55.3
SHI19193 Sapria himalayana HOM05D002034 ORTHO05D004251 1.7e-40 170.2 174 52.3
TAR357G0005 Trochodendron aralioides HOM05D002034 ORTHO05D004251 2.7e-38 162.9 165 56.4
MBI03_g47570_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D004251 1.8e-34 150.2 116 67.2
CDE08G0674 Ceratophyllum demersum HOM05D002034 ORTHO05D004251 1.4e-29 134.0 169 47.3
FvH4_3g39400 Fragaria vesca HOM05D002034 ORTHO05D004251 1.7e-24 117.1 163 43.6
CSS0025945 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 8.9e-21 104.8 149 41.6
CSS0014057 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 2.0e-20 103.6 149 41.6
Pp3c20_20280 Physcomitrium patens HOM05D002034 ORTHO05D004251 1.4e-18 97.4 167 41.3
Mapoly0006s0080 Marchantia polymorpha HOM05D002034 ORTHO05D004251 1.8e-18 97.1 274 29.9
SMO141G0130 Selaginella moellendorffii HOM05D002034 ORTHO05D004251 1.6e-17 94.0 292 28.1
Potri.001G280900 Populus trichocarpa HOM05D002034 ORTHO05D004251 1.5e-15 87.4 66 68.2
HPP92_012024 Vanilla planifolia HOM05D002034 ORTHO05D004251 3.3e-15 86.3 164 34.8
CSS0015510 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 4.3e-15 85.9 71 60.6
CSS0018399 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 4.3e-15 85.9 71 60.6
Pp3c22_21020 Physcomitrium patens HOM05D002034 ORTHO05D004251 1.2e-14 84.3 161 35.4
VMungo0647G0105 Vigna mungo HOM05D002034 ORTHO05D004251 3.6e-14 82.8 61 67.2
SEGI_34430 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 3.1e-13 79.7 51 68.6
CDE12G0844 Ceratophyllum demersum HOM05D002034 ORTHO05D004251 3.2e-10 69.7 35 85.7
Oeu060884.1 Olea europaea HOM05D002034 ORTHO05D004251 2.0e-09 67.0 108 38.0
CSS0002014 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 6.0e-09 65.5 35 77.1
Nitab4.5_0001115g0080 Nicotiana tabacum HOM05D002034 ORTHO05D004251 1.3e-08 64.3 35 80.0
FAN21G1045 Fragaria x ananassa HOM05D002034 ORTHO05D004251 2.3e-08 63.5 35 77.1
MCO07G130 Micromonas commoda HOM05D002034 ORTHO05D004251 3.6e-06 56.2 109 35.8


User provided reference genes

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