Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 2.6e-83 312.0 157 100.0
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 4.8e-61 238.0 142 82.4
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 2.2e-58 229.2 143 80.4
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 2.9e-58 228.8 142 78.9
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 1.1e-57 226.9 142 77.5
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 9.3e-57 223.8 142 78.2
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 2.7e-56 222.2 149 76.5
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 3.9e-55 218.4 144 75.0
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 3.3e-54 215.3 146 74.7
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 3.3e-54 215.3 142 75.4
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 1.3e-53 213.4 142 72.5
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 1.6e-53 213.0 140 75.0
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 1.6e-53 213.0 139 75.5
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 4.8e-53 211.5 146 74.0
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 1.8e-52 209.5 143 75.5
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 4.1e-52 208.4 148 70.9
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 1.2e-51 206.8 151 70.2
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 1.2e-51 206.8 149 69.1
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 1.5e-51 206.5 144 74.3
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 2.6e-51 205.7 142 73.2
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 4.5e-51 204.9 147 71.4
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 1.0e-50 203.8 144 68.8
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 1.7e-50 203.0 142 72.5
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 1.7e-50 203.0 146 71.9
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 2.2e-50 202.6 146 71.9
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 2.9e-50 202.2 145 71.0
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 6.5e-50 201.1 148 70.9
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 1.1e-49 200.3 142 71.8
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 1.1e-49 200.3 116 86.2
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 1.4e-49 199.9 145 72.4
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 1.4e-49 199.9 146 68.5
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.4e-49 199.9 151 71.5
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 3.2e-49 198.7 140 71.4
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 3.2e-49 198.7 146 69.2
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 3.2e-49 198.7 146 69.2
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 3.2e-49 198.7 149 69.1
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 3.2e-49 198.7 146 71.2
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 3.2e-49 198.7 143 70.6
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.2e-49 198.4 142 70.4
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 5.5e-49 198.0 140 71.4
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 5.5e-49 198.0 114 86.8
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.6e-48 196.4 146 68.5
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 1.6e-48 196.4 148 68.2
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 2.1e-48 196.1 154 65.6
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 2.1e-48 196.1 151 69.5
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 2.7e-48 195.7 148 67.6
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 2.7e-48 195.7 147 70.1
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 2.7e-48 195.7 143 69.2
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 3.6e-48 195.3 157 64.3
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 7.9e-48 194.1 148 68.2
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 1.0e-47 193.7 144 66.7
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 1.0e-47 193.7 140 68.6
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 1.0e-47 193.7 142 69.0
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 1.4e-47 193.4 143 69.9
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 1.8e-47 193.0 136 70.6
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 3.0e-47 192.2 144 66.0
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 3.0e-47 192.2 146 66.4
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 3.9e-47 191.8 144 66.7
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 8.8e-47 190.7 144 66.0
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 8.8e-47 190.7 144 66.0
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 8.8e-47 190.7 144 66.0
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 8.8e-47 190.7 160 62.5
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 8.8e-47 190.7 140 70.0
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 1.1e-46 190.3 144 65.3
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.1e-46 190.3 144 68.1
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 1.5e-46 189.9 144 65.3
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 2.0e-46 189.5 147 68.7
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 3.3e-46 188.7 109 85.3
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 5.7e-46 188.0 119 78.2
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 7.4e-46 187.6 145 69.7
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.3e-45 186.8 153 64.1
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 1.7e-45 186.4 114 78.9
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 4.8e-45 184.9 138 66.7
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 6.3e-45 184.5 139 65.5
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 8.2e-45 184.1 144 63.9
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 1.1e-44 183.7 138 66.7
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 1.4e-44 183.3 145 65.5
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 3.1e-44 182.2 145 68.3
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 4.1e-44 181.8 145 66.2
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 4.1e-44 181.8 146 65.8
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 9.1e-44 180.6 140 66.4
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 2.6e-43 179.1 152 65.1
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 1.1e-41 173.7 141 61.7
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 1.1e-41 173.7 132 64.4
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 1.9e-41 172.9 118 72.0
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 1.9e-41 172.9 140 63.6
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 1.2e-40 170.2 141 62.4
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 1.6e-40 169.9 144 61.1
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 7.9e-40 167.5 145 60.7
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 2.3e-39 166.0 146 61.6
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 5.2e-39 164.9 144 63.9
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 2.6e-38 162.5 132 62.1
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 5.7e-38 161.4 120 63.3
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 5.7e-38 161.4 117 68.4
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 2.8e-37 159.1 144 62.5
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 5.3e-36 154.8 149 57.0
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 5.9e-35 151.4 132 58.3
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 7.7e-35 151.0 160 48.8
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 2.2e-34 149.4 114 62.3
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 3.8e-34 148.7 140 56.4
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 3.6e-32 142.1 118 57.6
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.3e-31 139.4 107 66.4
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 3.0e-31 139.0 103 68.9
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 4.0e-31 138.7 124 57.3
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 6.7e-31 137.9 88 69.3
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 9.1e-28 127.5 67 89.6
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 2.0e-27 126.3 67 88.1
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 2.5e-25 119.4 85 65.9
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 4.7e-24 115.2 98 62.2
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 6.8e-23 111.3 123 47.2
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 2.0e-22 109.8 171 37.4
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 2.6e-22 109.4 85 67.1
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 3.4e-22 109.0 132 47.0
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 5.9e-11 71.6 132 34.8
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 5.6e-09 65.1 217 27.2
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 1.6e-08 63.5 87 37.9
HanXRQChr01g0005041 Helianthus annuus HOM05D002341 ORTHO05D018003 9.8e-06 54.3 30 80.0


User provided reference genes

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