Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 4.4e-172 607.8 298 100.0
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 4.4e-172 607.8 298 100.0
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 9.2e-130 467.2 297 74.7
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 3.9e-128 461.8 296 74.3
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 6.6e-128 461.1 284 77.1
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 1.2e-126 456.8 300 75.7
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 4.7e-126 454.9 294 75.9
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 1.1e-125 453.8 296 73.0
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 1.4e-125 453.4 281 77.2
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 3.1e-125 452.2 295 72.9
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 8.9e-125 450.7 298 72.1
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 1.2e-124 450.3 301 71.8
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.0e-124 449.5 296 74.7
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 7.6e-124 447.6 296 74.3
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 1.7e-123 446.4 294 72.8
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.4e-122 442.6 284 75.4
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 4.1e-122 441.8 295 75.6
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 7.1e-122 441.0 295 70.8
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 2.7e-121 439.1 294 71.8
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 1.7e-120 436.4 294 71.8
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.3e-119 432.2 295 74.2
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 4.3e-119 431.8 296 68.6
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 5.6e-119 431.4 294 71.8
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 1.6e-118 429.9 297 70.7
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 1.6e-118 429.9 262 76.7
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.4e-117 426.0 271 75.6
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 4.0e-117 425.2 297 70.4
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 1.2e-116 423.7 295 69.2
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 3.4e-116 422.2 284 70.8
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 4.4e-116 421.8 297 69.4
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 5.8e-116 421.4 277 72.9
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 5.8e-116 421.4 306 68.3
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 5.8e-116 421.4 297 70.7
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 7.6e-116 421.0 285 69.5
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 9.9e-116 420.6 290 68.6
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.3e-115 420.2 277 73.3
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 2.2e-115 419.5 303 67.7
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 4.9e-115 418.3 297 67.3
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 1.1e-114 417.2 277 72.6
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 3.2e-114 415.6 288 69.4
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 5.4e-114 414.8 295 69.8
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 1.6e-113 413.3 284 69.0
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.7e-113 412.5 260 76.9
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 7.8e-113 411.0 301 68.1
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 2.3e-112 409.5 290 66.6
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 3.9e-112 408.7 268 70.5
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 8.7e-112 407.5 302 64.6
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 1.1e-111 407.1 296 66.6
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 1.9e-111 406.4 281 69.8
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 3.3e-111 405.6 296 66.6
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 3.3e-111 405.6 290 68.3
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 9.6e-111 404.1 293 66.2
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 9.6e-111 404.1 300 64.7
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 1.6e-110 403.3 291 68.4
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.6e-110 403.3 295 64.7
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 2.1e-110 402.9 300 67.3
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 2.1e-110 402.9 299 66.2
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 2.1e-110 402.9 266 71.8
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 3.6e-110 402.1 298 67.1
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 3.6e-110 402.1 290 66.9
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 6.2e-110 401.4 283 67.1
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.1e-109 400.6 280 67.5
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 1.1e-109 400.6 296 65.2
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 1.4e-109 400.2 259 73.4
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 1.4e-109 400.2 259 73.4
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 1.8e-109 399.8 291 68.0
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 2.4e-109 399.4 298 63.8
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 3.1e-109 399.1 295 65.4
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 4.0e-109 398.7 295 64.1
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 9.0e-109 397.5 282 68.1
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 2.0e-108 396.4 293 66.2
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 3.4e-108 395.6 237 78.5
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 7.6e-108 394.4 315 65.1
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 1.3e-107 393.7 242 78.9
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 1.7e-107 393.3 255 71.4
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.8e-107 392.1 295 69.8
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 1.4e-106 390.2 288 66.3
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.4e-106 389.4 301 62.8
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.4e-106 389.4 287 65.2
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 5.4e-106 388.3 282 66.0
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 7.1e-106 387.9 247 76.5
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 1.2e-105 387.1 389 53.2
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 6.0e-105 384.8 297 64.3
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 9.6e-103 377.5 280 63.9
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 9.9e-100 367.5 294 61.9
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 1.1e-98 364.0 243 73.3
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 5.5e-98 361.7 295 62.7
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 1.8e-96 356.7 284 57.0
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 2.3e-96 356.3 278 60.1
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 3.9e-96 355.5 230 74.8
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.1e-95 354.0 232 74.1
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 1.5e-95 353.6 295 61.7
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 6.9e-93 344.7 284 57.4
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 7.6e-92 341.3 280 60.0
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 1.3e-88 330.5 243 63.4
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 8.2e-86 321.2 228 65.8
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 3.4e-84 315.8 219 69.4
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 6.5e-83 311.6 295 53.9
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 1.9e-82 310.1 274 55.8
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 4.2e-82 308.9 282 53.5
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 1.2e-81 307.4 279 53.8
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 2.1e-81 306.6 282 53.2
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 3.6e-81 305.8 273 53.8
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 3.6e-81 305.8 273 53.8
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 3.6e-81 305.8 273 53.8
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 3.6e-81 305.8 281 54.8
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 1.8e-80 303.5 243 60.5
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 1.8e-80 303.5 275 55.3
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 3.9e-80 302.4 266 55.6
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 8.7e-80 301.2 192 71.4
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 3.7e-78 295.8 261 55.9
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 8.2e-78 294.7 280 53.6
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 3.4e-76 289.3 276 53.3
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 1.9e-74 283.5 273 56.4
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 2.1e-73 280.0 258 53.9
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 1.8e-69 266.9 228 56.1
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 8.5e-67 258.1 230 56.1
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 2.1e-65 253.4 203 59.6
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 3.6e-65 252.7 222 56.8
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 1.9e-58 230.3 227 51.1
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 1.4e-56 224.2 137 76.6
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 2.3e-56 223.4 273 44.7
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 7.5e-55 218.4 229 48.5
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 1.7e-51 207.2 208 58.2
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 5.2e-40 169.1 136 62.5
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 1.8e-37 160.6 251 38.6
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 3.1e-37 159.8 127 59.1
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 2.3e-32 143.7 97 74.2
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 3.5e-28 129.8 210 34.8
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 1.0e-19 101.7 158 34.8
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 2.5e-18 97.1 165 33.3
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 5.6e-18 95.9 78 59.0
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 3.1e-16 90.1 48 87.5
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 8.9e-16 88.6 115 44.3
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 2.6e-15 87.0 86 51.2
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 1.3e-14 84.7 55 69.1
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 1.9e-10 70.9 49 63.3
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 3.3e-10 70.1 259 25.9


User provided reference genes

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