Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.2e-153 546.6 294 100.0
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 8.5e-136 487.3 283 91.2
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 2.2e-120 436.0 284 80.6
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 3.8e-120 435.3 279 81.7
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 5.0e-120 434.9 281 81.9
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 7.2e-119 431.0 284 81.7
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 7.2e-119 431.0 281 81.9
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 9.4e-119 430.6 280 81.8
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 1.6e-118 429.9 273 84.2
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 2.7e-118 429.1 281 80.8
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 8.0e-118 427.6 282 81.2
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 1.4e-117 426.8 281 81.5
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 5.2e-117 424.9 282 80.9
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 2.0e-116 422.9 281 80.4
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 4.4e-116 421.8 283 79.5
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 7.5e-116 421.0 282 79.1
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 1.7e-115 419.9 282 78.7
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 2.2e-115 419.5 281 79.7
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 1.1e-114 417.2 273 80.6
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 1.2e-113 413.7 285 78.2
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 2.0e-113 412.9 274 80.3
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 3.5e-113 412.1 275 80.7
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 4.5e-113 411.8 272 78.7
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 5.9e-113 411.4 284 78.5
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 1.7e-112 409.8 288 77.8
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 8.5e-112 407.5 283 76.3
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 1.5e-111 406.8 284 78.5
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 2.5e-111 406.0 283 77.7
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 2.5e-111 406.0 277 78.0
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 9.4e-111 404.1 308 72.1
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 1.2e-110 403.7 277 76.9
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 6.1e-110 401.4 275 76.7
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 6.1e-110 401.4 277 76.9
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 8.0e-110 401.0 286 77.3
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 1.8e-109 399.8 283 77.4
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 2.3e-109 399.4 276 76.8
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 2.3e-109 399.4 287 74.9
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 6.8e-109 397.9 279 77.1
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 8.8e-109 397.5 284 76.1
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 1.2e-108 397.1 280 77.5
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 7.5e-108 394.4 275 77.1
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 4.9e-107 391.7 329 66.9
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 6.3e-107 391.3 263 78.7
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.1e-106 390.6 282 76.2
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 1.4e-106 390.2 273 76.2
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 1.8e-106 389.8 266 78.2
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.0e-105 386.3 280 72.5
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 3.5e-105 385.6 268 77.2
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 7.7e-105 384.4 268 76.9
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 2.9e-104 382.5 273 75.8
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 5.0e-104 381.7 280 74.3
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 8.6e-104 380.9 277 73.6
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 8.6e-104 380.9 281 74.4
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 1.1e-103 380.6 289 73.0
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 2.5e-103 379.4 289 73.0
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 5.6e-103 378.3 285 74.0
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.2e-102 377.1 288 74.3
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 1.2e-102 377.1 313 68.4
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 3.6e-102 375.6 266 78.9
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 6.1e-102 374.8 278 73.7
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 6.1e-102 374.8 270 77.4
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 1.4e-101 373.6 279 74.9
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 6.8e-101 371.3 277 71.8
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.0e-100 369.8 273 70.3
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.6e-100 369.4 273 70.7
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 4.4e-100 368.6 286 71.0
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 2.2e-99 366.3 268 74.6
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 2.2e-99 366.3 308 67.2
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 9.2e-98 360.9 270 72.6
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 1.6e-97 360.1 231 82.7
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.3e-96 357.1 266 74.8
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 5.6e-95 351.7 222 84.7
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 1.6e-94 350.1 264 73.9
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 3.6e-94 349.0 273 70.3
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.8e-93 346.7 354 59.9
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 2.3e-93 346.3 273 70.0
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 5.2e-93 345.1 264 72.3
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 6.8e-93 344.7 277 71.8
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 8.9e-93 344.4 274 71.9
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 8.9e-93 344.4 280 69.3
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 5.8e-92 341.7 279 68.1
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 6.4e-91 338.2 277 70.4
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 2.0e-89 333.2 245 75.9
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 3.5e-89 332.4 277 69.7
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 1.3e-88 330.5 261 70.5
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 1.9e-87 326.6 265 70.2
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 5.6e-87 325.1 324 60.5
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 7.3e-87 324.7 233 75.5
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 1.6e-86 323.6 275 69.5
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 3.1e-85 319.3 280 66.1
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 6.8e-85 318.2 283 64.0
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 6.8e-85 318.2 268 65.7
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 1.5e-84 317.0 277 67.5
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 2.6e-84 316.2 277 67.1
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 1.7e-83 313.5 273 65.2
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 2.2e-83 313.2 248 69.4
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 2.2e-83 313.2 248 69.4
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 6.4e-83 311.6 274 63.9
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 1.4e-82 310.5 274 63.5
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 4.1e-82 308.9 225 72.4
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 5.1e-80 302.0 246 68.7
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.5e-79 300.4 281 64.8
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 3.6e-78 295.8 270 63.0
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 2.3e-77 293.1 277 63.2
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 5.8e-76 288.5 286 61.2
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 4.9e-75 285.4 287 61.3
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 4.1e-74 282.3 277 62.8
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 7.1e-74 281.6 263 63.5
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 1.0e-72 277.7 269 58.0
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 5.6e-71 271.9 234 64.1
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 1.2e-68 264.2 275 58.5
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 3.5e-65 252.7 152 88.8
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 1.3e-64 250.8 252 58.3
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 1.7e-64 250.4 194 69.6
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 7.3e-63 245.0 166 78.9
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 1.1e-61 241.1 262 54.6
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 3.9e-56 222.6 157 75.2
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 8.4e-51 204.9 135 76.3
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 1.4e-50 204.1 136 75.7
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 6.0e-49 198.7 182 64.8
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 1.0e-48 198.0 126 86.5
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 9.6e-47 191.4 124 79.8
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 3.7e-46 189.5 278 47.1
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 4.0e-45 186.0 122 82.0
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 1.2e-44 184.5 124 82.3
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 2.0e-44 183.7 286 42.3
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.9e-43 179.9 158 64.6
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 2.5e-42 176.8 135 68.9
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 1.6e-41 174.1 128 72.7
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 5.1e-40 169.1 117 78.6
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 2.5e-39 166.8 147 64.6
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 2.8e-38 163.3 129 72.1
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 2.8e-38 163.3 130 71.5
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 2.8e-38 163.3 240 44.2
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 4.8e-38 162.5 260 43.5
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 3.1e-37 159.8 132 69.7
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 5.3e-37 159.1 126 69.0
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 9.0e-37 158.3 234 43.6
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 6.7e-32 142.1 275 40.0
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 9.7e-31 138.3 118 64.4
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 1.3e-30 137.9 142 56.3
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 3.0e-24 116.7 130 57.7
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 1.6e-12 77.8 178 37.6
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 1.9e-10 70.9 38 84.2
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 1.6e-09 67.8 38 84.2
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 1.8e-08 64.3 87 54.0
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 8.8e-08 62.0 37 78.4
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 4.4e-07 59.7 108 38.9
BolC8t52058H Brassica oleracea HOM05D005050 ORTHO05D006198 2.2e-06 57.4 35 74.3
Zm00001eb244490 Zea mays HOM05D001326 ORTHO05D002471 2.8e-06 57.0 33 78.8


User provided reference genes

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