Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR127G0005 Trochodendron aralioides HOM05D005489 ORTHO05D006629 2.3e-65 251.9 115 100.0
TAR628G1556 Trochodendron aralioides HOM05D005489 ORTHO05D006629 1.2e-37 159.8 75 94.7
Solyc11g013550.2 Solanum lycopersicum HOM05D005489 ORTHO05D006629 6.0e-37 157.5 75 90.7
HanXRQChr09g0260151 Helianthus annuus HOM05D005489 ORTHO05D006629 7.9e-37 157.1 75 92.0
HanXRQChr11g0326271 Helianthus annuus HOM05D005489 ORTHO05D006629 7.9e-37 157.1 75 93.3
PGSC0003DMG400027793 Solanum tuberosum HOM05D005489 ORTHO05D006629 7.9e-37 157.1 75 90.7
MBI06_g01046_MAGBIO Magnolia biondii HOM05D005489 ORTHO05D006629 1.0e-36 156.8 75 92.0
Sopen11g008580 Solanum pennellii HOM05D005489 ORTHO05D006629 1.3e-36 156.4 75 89.3
Hma1.2p1_0221F.1_g093180 Hydrangea macrophylla HOM05D005489 ORTHO05D006629 1.8e-36 156.0 75 92.0
Nitab4.5_0000051g0120 Nicotiana tabacum HOM05D005489 ORTHO05D006629 2.3e-36 155.6 75 90.7
Nitab4.5_0002332g0020 Nicotiana tabacum HOM05D005489 ORTHO05D006629 2.3e-36 155.6 75 90.7
Aqoxy5G02479 Aquilegia oxysepala HOM05D005489 ORTHO05D006629 3.0e-36 155.2 75 92.0
Haze_00523 Corylus avellana HOM05D005489 ORTHO05D006629 3.0e-36 155.2 75 90.7
CiPaw.05G228700 Carya illinoinensis HOM05D005489 ORTHO05D006629 3.9e-36 154.8 75 89.3
Lsat_1_v5_gn_4_135561 Lactuca sativa HOM05D005489 ORTHO05D006629 3.9e-36 154.8 75 92.0
Atru.chr13.1318 Acer truncatum HOM05D005489 ORTHO05D006629 5.1e-36 154.5 75 88.0
Atru.chr13.1362 Acer truncatum HOM05D005489 ORTHO05D006629 5.1e-36 154.5 75 88.0
CANSAT25G2554 Cannabis sativa HOM05D005489 ORTHO05D006629 5.1e-36 154.5 81 81.5
CAN.G255.20 Capsicum annuum HOM05D005489 ORTHO05D006629 5.1e-36 154.5 75 88.0
MD15G1359200 Malus domestica HOM05D005489 ORTHO05D006629 8.7e-36 153.7 75 89.3
Cfa015959 Carpinus fangiana HOM05D005489 ORTHO05D006629 1.1e-35 153.3 74 90.5
CDE06G1809 Ceratophyllum demersum HOM05D005489 ORTHO05D006629 1.1e-35 153.3 75 86.7
COL.COLO4_32811 Corchorus olitorius HOM05D005489 ORTHO05D006629 1.1e-35 153.3 75 90.7
FvH4_5g38950 Fragaria vesca HOM05D005489 ORTHO05D006629 1.1e-35 153.3 75 89.3
FAN04G1587 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.1e-35 153.3 75 89.3
FAN08G2064 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.1e-35 153.3 75 89.3
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.1e-35 153.3 75 89.3
FAN18G3455 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.1e-35 153.3 75 89.3
Manes.18G073000 Manihot esculenta HOM05D005489 ORTHO05D006629 1.1e-35 153.3 75 88.0
Nn5g27958 Nelumbo nucifera HOM05D005489 ORTHO05D006629 1.5e-35 152.9 75 90.7
Ciclev10002818m.g Citrus clementina HOM05D005489 ORTHO05D006629 1.9e-35 152.5 75 88.0
PGR044G1289 Punica granatum HOM05D005489 ORTHO05D006629 1.9e-35 152.5 75 88.0
Rhsim06G0109100 Rhododendron simsii HOM05D005489 ORTHO05D006629 1.9e-35 152.5 75 90.7
Dinv26716 Davidia involucrata HOM05D005489 ORTHO05D006629 2.5e-35 152.1 75 89.3
Sc01g0001550 Simmondsia chinensis HOM05D005489 ORTHO05D006629 3.3e-35 151.8 75 85.3
TWI56G0906 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 3.3e-35 151.8 75 85.3
Peaxi162Scf01011g00023 Petunia axillaris HOM05D005489 ORTHO05D006629 4.3e-35 151.4 75 89.3
Prupe.1G506000 Prunus persica HOM05D005489 ORTHO05D006629 4.3e-35 151.4 75 88.0
TAR197G0004 Trochodendron aralioides HOM05D005489 ORTHO05D006629 4.3e-35 151.4 75 90.7
Dinv27383 Davidia involucrata HOM05D005489 ORTHO05D006629 5.6e-35 151.0 75 89.3
DCAR_014792 Daucus carota HOM05D005489 ORTHO05D006629 7.4e-35 150.6 75 89.3
Thecc.08G116800 Theobroma cacao HOM05D005489 ORTHO05D006629 7.4e-35 150.6 75 86.7
QL12p035283 Quercus lobata HOM05D005489 ORTHO05D006629 9.6e-35 150.2 75 86.7
MELO3C022783.2 Cucumis melo HOM05D005489 ORTHO05D006629 1.3e-34 149.8 75 86.7
Sed0015736 Sechium edule HOM05D005489 ORTHO05D006629 1.3e-34 149.8 75 86.7
GSVIVG01008943001 Vitis vinifera HOM05D005489 ORTHO05D006629 1.3e-34 149.8 75 88.0
Nn1g08538 Nelumbo nucifera HOM05D005489 ORTHO05D006629 1.6e-34 149.4 75 86.7
DCAR_023128 Daucus carota HOM05D005489 ORTHO05D006629 2.1e-34 149.1 75 88.0
Gohir.A01G187700 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.8e-34 148.7 75 84.0
Gohir.A02G075000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 2.8e-34 148.7 75 84.0
PSO017G5790 Papaver somniferum HOM05D005489 ORTHO05D006629 2.8e-34 148.7 75 89.3
PSO170G3859 Papaver somniferum HOM05D005489 ORTHO05D006629 2.8e-34 148.7 75 89.3
RcHm_v2.0_Chr7g0240921 Rosa chinensis HOM05D005489 ORTHO05D006629 2.8e-34 148.7 75 86.7
Hund16821 Selenicereus undatus HOM05D005489 ORTHO05D006629 2.8e-34 148.7 75 88.0
THA.LOC104806808 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 2.8e-34 148.7 75 85.3
Duzib041G0073 Durio zibethinus HOM05D005489 ORTHO05D006629 3.7e-34 148.3 75 85.3
Gohir.D02G082100 Gossypium hirsutum HOM05D005489 ORTHO05D006629 3.7e-34 148.3 75 84.0
ClCG03G009110 Citrullus lanatus HOM05D005489 ORTHO05D006629 4.8e-34 147.9 74 86.5
CsaV3_5G023520 Cucumis sativus L. HOM05D005489 ORTHO05D006629 4.8e-34 147.9 74 86.5
ECA232G0625 Erigeron canadensis HOM05D005489 ORTHO05D006629 4.8e-34 147.9 71 94.4
Aa31LG6G9070 Aethionema arabicum HOM05D005489 ORTHO05D006629 8.1e-34 147.1 75 82.7
THA.LOC104813132 Tarenaya hassleriana HOM05D005489 ORTHO05D006629 1.1e-33 146.7 75 84.0
Duzib093G1687 Durio zibethinus HOM05D005489 ORTHO05D006629 1.4e-33 146.4 75 84.0
Glyma.04G253700 Glycine max HOM05D005489 ORTHO05D006629 1.4e-33 146.4 75 85.3
Gorai.002G220400 Gossypium raimondii HOM05D005489 ORTHO05D006629 1.4e-33 146.4 75 82.7
Sabra02G0070300 Salix brachista HOM05D005489 ORTHO05D006629 1.4e-33 146.4 75 84.0
TWI12G0464 Tripterygium wilfordii HOM05D005489 ORTHO05D006629 1.8e-33 146.0 75 81.3
BcaB03g13640 Brassica carinata HOM05D005489 ORTHO05D006629 2.4e-33 145.6 75 82.7
BcaC05g27681 Brassica carinata HOM05D005489 ORTHO05D006629 2.4e-33 145.6 75 82.7
A05p23180 Brassica napus HOM05D005489 ORTHO05D006629 2.4e-33 145.6 75 82.7
C05p36630 Brassica napus HOM05D005489 ORTHO05D006629 2.4e-33 145.6 75 82.7
BraA05t21185Z Brassica rapa HOM05D005489 ORTHO05D006629 2.4e-33 145.6 75 82.7
Potri.005G171901 Populus trichocarpa HOM05D005489 ORTHO05D006629 2.4e-33 145.6 75 82.7
SGA_v2.0_scaffold118G32436 Striga asiatica HOM05D005489 ORTHO05D006629 2.4e-33 145.6 75 86.7
arahy.Tifrunner.gnm1.ann1.204R5H Arachis hypogaea HOM05D005489 ORTHO05D006629 3.1e-33 145.2 75 84.0
arahy.Tifrunner.gnm1.ann1.64ZY3M Arachis hypogaea HOM05D005489 ORTHO05D006629 3.1e-33 145.2 75 84.0
CARHR034780 Cardamine hirsuta HOM05D005489 ORTHO05D006629 3.1e-33 145.2 75 81.3
Thhalv10005115m.g Eutrema salsugineum HOM05D005489 ORTHO05D006629 3.1e-33 145.2 75 81.3
Lj1g0000272 Lotus japonicus HOM05D005489 ORTHO05D006629 3.1e-33 145.2 75 84.0
EL10Ac1g00039 Beta vulgaris HOM05D005489 ORTHO05D006629 4.0e-33 144.8 75 86.7
Gohir.A06G041000 Gossypium hirsutum HOM05D005489 ORTHO05D006629 4.0e-33 144.8 75 81.3
Gohir.D06G041900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 4.0e-33 144.8 75 81.3
Gorai.010G047100 Gossypium raimondii HOM05D005489 ORTHO05D006629 4.0e-33 144.8 75 81.3
Potri.002G089300 Populus trichocarpa HOM05D005489 ORTHO05D006629 4.0e-33 144.8 75 82.7
AL1G51120 Arabidopsis lyrata HOM05D005489 ORTHO05D006629 5.3e-33 144.4 75 81.3
AT1G36980 Arabidopsis thaliana HOM05D005489 ORTHO05D006629 5.3e-33 144.4 75 81.3
Carub.0001s3388 Capsella rubella HOM05D005489 ORTHO05D006629 5.3e-33 144.4 75 82.7
Glyma.06G108600 Glycine max HOM05D005489 ORTHO05D006629 5.3e-33 144.4 75 84.0
SGA_v2.0_scaffold24G10504 Striga asiatica HOM05D005489 ORTHO05D006629 5.3e-33 144.4 75 85.3
Sp1g31180 Schrenkiella parvula HOM05D005489 ORTHO05D006629 6.9e-33 144.1 75 81.3
ATR0121G008 Amborella trichopoda HOM05D005489 ORTHO05D006629 9.0e-33 143.7 74 86.5
BcaC05g27682 Brassica carinata HOM05D005489 ORTHO05D006629 9.0e-33 143.7 74 82.4
C05p36640 Brassica napus HOM05D005489 ORTHO05D006629 9.0e-33 143.7 74 82.4
Ca_25761_v3 Cicer arietinum L. HOM05D005489 ORTHO05D006629 9.0e-33 143.7 75 82.7
Medtr3g073300 Medicago truncatula HOM05D005489 ORTHO05D006629 9.0e-33 143.7 75 82.7
Psat5g135600 Pisum sativum HOM05D005489 ORTHO05D006629 9.0e-33 143.7 75 82.7
SalBow1G3581 Salvia bowleyana HOM05D005489 ORTHO05D006629 9.0e-33 143.7 75 84.0
TPR.G32948 Trifolium pratense HOM05D005489 ORTHO05D006629 9.0e-33 143.7 75 82.7
VMungo1127G1458 Vigna mungo HOM05D005489 ORTHO05D006629 9.0e-33 143.7 75 81.3
Phvul.011G165300 Phaseolus vulgaris HOM05D005489 ORTHO05D006629 1.5e-32 142.9 75 81.3
Migut.C01190 Erythranthe guttata HOM05D005489 ORTHO05D006629 2.0e-32 142.5 75 82.7
MSTRG.1486 Avicennia marina HOM05D005489 ORTHO05D006629 3.4e-32 141.7 75 80.0
Lalb_Chr08g0241711 Lupinus albus HOM05D005489 ORTHO05D006629 1.0e-31 140.2 75 80.0
Lalb_Chr11g0065701 Lupinus albus HOM05D005489 ORTHO05D006629 1.0e-31 140.2 75 80.0
BolC5t32398H Brassica oleracea HOM05D005489 ORTHO05D006629 2.2e-31 139.0 81 76.5
Cc10_g10440 Coffea canephora HOM05D005489 ORTHO05D006629 3.8e-31 138.3 75 85.3
Gohir.D01G181900 Gossypium hirsutum HOM05D005489 ORTHO05D006629 4.9e-31 137.9 75 80.0
Oeu032962.1 Olea europaea HOM05D005489 ORTHO05D006629 6.5e-31 137.5 75 82.7
Oeu043793.1 Olea europaea HOM05D005489 ORTHO05D006629 1.4e-30 136.3 76 78.9
Nn2g15248 Nelumbo nucifera HOM05D005489 ORTHO05D006629 3.2e-30 135.2 73 80.8
unitig_747.g21477 Utricularia gibba HOM05D003597 ORTHO05D004420 5.5e-30 134.4 74 77.0
Migut.N03320 Erythranthe guttata HOM05D005489 ORTHO05D006629 7.1e-30 134.0 75 78.7
HPP92_002297 Vanilla planifolia HOM05D005489 ORTHO05D006629 1.0e-28 130.2 73 80.8
Actinidia29431 Actinidia chinensis HOM05D005489 ORTHO05D006629 3.9e-28 128.3 75 74.7
HPP92_005944 Vanilla planifolia HOM05D005489 ORTHO05D006629 3.3e-27 125.2 75 74.7
Oeu050268.1 Olea europaea HOM05D005489 ORTHO05D006629 5.7e-27 124.4 76 76.3
Os02g0566900 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 5.7e-27 124.4 76 71.1
AagrBONN_evm.TU.Sc2ySwM_344.2049 Anthoceros agrestis HOM05D005489 ORTHO05D006629 2.8e-26 122.1 71 74.6
SEGI_34511 Sequoiadendron giganteum HOM05D005489 ORTHO05D006629 6.3e-26 120.9 71 74.6
Zm00001eb100550 Zea mays HOM05D005489 ORTHO05D006629 1.1e-25 120.2 74 71.6
Zm00001eb244520 Zea mays HOM05D005489 ORTHO05D006629 1.1e-25 120.2 72 73.6
Os09g0453000 Oryza sativa ssp. japonica HOM05D005489 ORTHO05D006629 9.0e-25 117.1 74 71.6
CBR_g30829 Chara braunii HOM05D005489 ORTHO05D006629 6.5e-23 110.9 70 70.0
Mapoly0004s0020 Marchantia polymorpha HOM05D005489 ORTHO05D006629 8.4e-23 110.5 90 60.0
Pp3c1_10200 Physcomitrium patens HOM05D005489 ORTHO05D006629 8.4e-23 110.5 73 64.4
Pp3c2_28270 Physcomitrium patens HOM05D005489 ORTHO05D006629 1.4e-22 109.8 73 65.8
SMO116G0262 Selaginella moellendorffii HOM05D005489 ORTHO05D006629 3.2e-22 108.6 72 66.7
Eucgr.F04378 Eucalyptus grandis HOM05D005489 ORTHO05D006629 2.0e-16 89.4 47 80.9
Sabra05G0129400 Salix brachista HOM05D005489 ORTHO05D006629 2.5e-14 82.4 75 54.7
Cre01.g042950 Chlamydomonas reinhardtii HOM05D005489 ORTHO05D006629 3.6e-13 78.6 66 48.5
Gorai.005G092000 Gossypium raimondii HOM05D005489 ORTHO05D006629 3.1e-09 65.5 31 87.1
SalBow7G1125 Salvia bowleyana HOM05D002998 ORTHO05D006629 6.9e-09 64.3 35 74.3
SalBow7G4082 Salvia bowleyana HOM05D005489 ORTHO05D006629 6.9e-09 64.3 35 74.3
AUR62004694 Chenopodium quinoa HOM05D005489 ORTHO05D006629 1.3e-07 60.1 28 89.3


User provided reference genes

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