Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR078G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.1e-51 205.3 96 100.0
TAR365G0008 Trochodendron aralioides HOM05D001163 ORTHO05D001769 1.7e-48 195.7 95 95.8
TAR365G0123 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.7e-48 195.7 95 95.8
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.7e-48 195.7 95 95.8
TAR622G0651 Trochodendron aralioides HOM05D000141 ORTHO05D000385 1.7e-48 195.7 95 95.8
TAR633G0853 Trochodendron aralioides HOM05D001163 ORTHO05D001769 1.7e-48 195.7 95 95.8
TAR369G0469 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.4e-47 192.6 95 92.6
TAR629G0890 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.4e-47 191.8 95 91.6
TAR629G3448 Trochodendron aralioides HOM05D001163 ORTHO05D001769 6.8e-42 173.7 83 94.0
TAR624G0746 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.4e-31 139.4 68 91.2
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 7.5e-25 117.1 95 65.3
TAR628G0437 Trochodendron aralioides HOM05D001309 ORTHO05D000385 9.8e-25 116.7 95 64.2
Gohir.A01G183600 Gossypium hirsutum HOM05D001309 ORTHO05D005970 2.8e-19 98.6 95 48.4
Gohir.D01G174600 Gossypium hirsutum HOM05D001309 ORTHO05D000385 3.6e-19 98.2 95 48.4
Manes.10G118800 Manihot esculenta HOM05D001309 ORTHO05D000385 2.3e-18 95.5 95 47.4
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 3.1e-18 95.1 95 46.3
COL.COLO4_17726 Corchorus olitorius HOM05D001309 ORTHO05D005970 8.9e-18 93.6 94 46.8
Gohir.A12G044100 Gossypium hirsutum HOM05D001309 ORTHO05D005970 1.2e-17 93.2 93 46.2
Gohir.D12G043100 Gossypium hirsutum HOM05D001309 ORTHO05D000385 1.2e-17 93.2 93 46.2
Gorai.008G045300 Gossypium raimondii HOM05D001309 ORTHO05D005970 1.2e-17 93.2 93 46.2
Lsat_1_v5_gn_9_120520 Lactuca sativa HOM05D001309 ORTHO05D005970 1.2e-17 93.2 95 47.4
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 1.5e-17 92.8 95 45.3
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 2.0e-17 92.4 93 45.2
Manes.07G023800 Manihot esculenta HOM05D001309 ORTHO05D005970 1.3e-16 89.7 95 46.3
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.7e-16 89.4 93 43.0
MBI15_g36793_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.2e-16 89.0 95 44.2
MBI18_g39412_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.9e-16 88.6 95 43.2
MBI19_g12820_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.7e-16 88.2 95 42.1
MBI09_g33431_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 4.9e-16 87.8 95 42.1
HanXRQChr03g0064971 Helianthus annuus HOM05D001309 ORTHO05D005970 2.4e-15 85.5 95 45.3
Actinidia00177 Actinidia chinensis HOM05D001309 ORTHO05D000385 3.2e-15 85.1 93 40.9
Oeu023404.2 Olea europaea HOM05D001309 ORTHO05D005970 3.2e-15 85.1 93 45.2
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 4.1e-15 84.7 93 40.9
MBI08_g05402_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 7.1e-15 84.0 95 35.8
MBI19_g33997_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 7.1e-15 84.0 95 40.0
Actinidia01605 Actinidia chinensis HOM05D001309 ORTHO05D005970 9.2e-15 83.6 91 44.0
DCAR_001756 Daucus carota HOM05D001309 ORTHO05D000385 1.2e-14 83.2 93 41.9
MBI19_g16213_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.2e-14 83.2 95 38.9
Actinidia39002 Actinidia chinensis HOM05D001309 ORTHO05D000385 1.6e-14 82.8 88 44.3
MBI14_g07746_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.5e-14 81.6 95 40.0
MBI11_g19485_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 7.8e-14 80.5 95 43.2
MBI11_g30647_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 7.8e-14 80.5 95 36.8
MBI16_g34941_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 7.8e-14 80.5 95 41.1
MBI03_g15598_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.7e-13 79.3 95 40.0
HanXRQChr03g0064951 Helianthus annuus HOM05D005763 ORTHO05D005970 2.3e-13 79.0 95 42.1
MBI17_g42351_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.3e-13 79.0 88 40.9
MBI06_g41780_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.0e-13 78.6 95 40.0
MBI13_g26301_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 5.1e-13 77.8 88 42.0
CSS0015098 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 6.6e-13 77.4 90 41.1
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 6.6e-13 77.4 93 38.7
COL.COLO4_08701 Corchorus olitorius HOM05D001309 ORTHO05D000385 8.6e-13 77.0 95 42.1
ECA247G3253 Erigeron canadensis HOM05D005763 ORTHO05D005970 1.1e-12 76.6 95 40.0
Nn4g24072 Nelumbo nucifera HOM05D001309 ORTHO05D000385 1.1e-12 76.6 97 38.1
MBI17_g16204_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.5e-12 76.3 82 41.5
MBI09_g41430_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 2.5e-12 75.5 82 41.5
MBI15_g13426_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 5.6e-12 74.3 80 41.2
ECA240G1654 Erigeron canadensis HOM05D005763 ORTHO05D005970 7.3e-12 73.9 95 40.0
Lsat_1_v5_gn_9_120341 Lactuca sativa HOM05D000539 ORTHO05D000233 9.6e-12 73.6 87 36.8
MBI06_g39196_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 9.6e-12 73.6 95 33.7
Os04g0609900 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 9.6e-12 73.6 95 41.1
PGR044G2648 Punica granatum HOM05D000876 ORTHO05D000285 1.2e-11 73.2 95 35.8
MBI14_g41280_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 8.1e-11 70.5 95 37.9
Rhsim13G0228900 Rhododendron simsii HOM05D001309 ORTHO05D000385 1.4e-10 69.7 75 42.7
Hma1.2p1_0174F.1_g076560 Hydrangea macrophylla HOM05D001309 ORTHO05D000385 2.4e-10 68.9 93 32.3
Nn2g11546 Nelumbo nucifera HOM05D001309 ORTHO05D000385 2.4e-10 68.9 100 36.0
Lsat_1_v5_gn_9_120321 Lactuca sativa HOM05D005763 ORTHO05D005970 5.2e-10 67.8 74 40.5
Rhsim06G0190000 Rhododendron simsii HOM05D001309 ORTHO05D000385 8.9e-10 67.0 88 36.4
COL.COLO4_36623 Corchorus olitorius HOM05D001309 ORTHO05D000385 1.2e-09 66.6 95 37.9
vmacro00652 Vaccinium macrocarpon HOM05D001309 ORTHO05D000385 1.5e-09 66.2 93 33.3
DCAR_032376 Daucus carota HOM05D013476 ORTHO05D012368 2.0e-09 65.9 93 34.4
Sopen04g011930 Solanum pennellii HOM05D007930 ORTHO05D007166 2.0e-09 65.9 95 33.7
TAR375G0312 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.6e-09 65.5 31 96.8
Nn7g36848 Nelumbo nucifera HOM05D001309 ORTHO05D000385 4.4e-09 64.7 85 36.5
Os04g0610000 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 4.4e-09 64.7 93 35.5
Rhsim10G0033700 Rhododendron simsii HOM05D001309 ORTHO05D000385 5.8e-09 64.3 88 35.2
TAR626G0226 Trochodendron aralioides HOM05D009698 ORTHO05D000385 5.8e-09 64.3 81 38.3
CSS0013398 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 7.6e-09 63.9 79 35.4
Thecc.09G100000 Theobroma cacao HOM05D001309 ORTHO05D000385 7.6e-09 63.9 89 37.1
DCAR_022238 Daucus carota HOM05D004615 ORTHO05D000385 1.3e-08 63.2 81 35.8
DCAR_029785 Daucus carota HOM05D004615 ORTHO05D000385 1.3e-08 63.2 81 35.8
Dinv04171 Davidia involucrata HOM05D010146 ORTHO05D000385 1.3e-08 63.2 93 32.3
Dinv09828 Davidia involucrata HOM05D001309 ORTHO05D000385 1.3e-08 63.2 93 32.3
MBI15_g16946_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.3e-08 63.2 95 35.8
TAR626G0324 Trochodendron aralioides HOM05D000774 ORTHO05D000602 1.3e-08 63.2 28 96.4
TAR636G2188 Trochodendron aralioides HOM05D004616 ORTHO05D000385 1.3e-08 63.2 66 39.4
Cc00_g05340 Coffea canephora HOM05D005012 ORTHO05D005886 1.7e-08 62.8 82 32.9
MBI15_g37112_MAGBIO Magnolia biondii HOM05D000308 ORTHO05D000194 2.2e-08 62.4 96 39.6
PGSC0003DMG400004327 Solanum tuberosum HOM05D001309 ORTHO05D000385 2.2e-08 62.4 81 34.6
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 2.9e-08 62.0 108 30.6
Dinv12592 Davidia involucrata HOM05D010146 ORTHO05D000385 2.9e-08 62.0 93 31.2
Dinv15672 Davidia involucrata HOM05D010146 ORTHO05D000385 2.9e-08 62.0 93 31.2
Rhsim01G0104600 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.9e-08 62.0 75 36.0
Dinv19999 Davidia involucrata HOM05D010146 ORTHO05D000385 3.8e-08 61.6 93 30.1
Rhsim09G0075900 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.8e-08 61.6 88 35.2
EL10Ac2g03126 Beta vulgaris HOM05D008595 ORTHO05D010945 6.4e-08 60.8 109 31.2
EL10Ac3g06761 Beta vulgaris HOM05D008595 ORTHO05D010945 6.4e-08 60.8 109 31.2
EL10Ac3g06763 Beta vulgaris HOM05D008595 ORTHO05D010945 6.4e-08 60.8 109 31.2
EL10Ac5g11175 Beta vulgaris HOM05D008595 ORTHO05D010945 6.4e-08 60.8 109 31.2
EL10Ac5g11465 Beta vulgaris HOM05D008595 ORTHO05D010945 6.4e-08 60.8 109 31.2
EL10Ac5g11789 Beta vulgaris HOM05D008595 ORTHO05D010945 6.4e-08 60.8 109 31.2
EL10Ac6g14473 Beta vulgaris HOM05D008595 ORTHO05D010945 6.4e-08 60.8 109 31.2
EL10Ac7g16685 Beta vulgaris HOM05D008595 ORTHO05D010945 6.4e-08 60.8 109 31.2
EL10Ac8g20153 Beta vulgaris HOM05D008595 ORTHO05D010945 6.4e-08 60.8 109 31.2
Dinv04329 Davidia involucrata HOM05D010146 ORTHO05D000385 6.4e-08 60.8 64 37.5
Dinv11732 Davidia involucrata HOM05D010146 ORTHO05D000385 6.4e-08 60.8 64 37.5
Rhsim11G0013700 Rhododendron simsii HOM05D001309 ORTHO05D000385 6.4e-08 60.8 56 42.9
Atru.chr1.767 Acer truncatum HOM05D001309 ORTHO05D000385 8.4e-08 60.5 92 30.4
Atru.chr7.472 Acer truncatum HOM05D001309 ORTHO05D000385 8.4e-08 60.5 82 34.1
CSS0004946 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 8.4e-08 60.5 98 30.6
Atru.chr1.3691 Acer truncatum HOM05D005012 ORTHO05D005886 1.1e-07 60.1 92 31.5
EL10Ac1g02242 Beta vulgaris HOM05D008595 ORTHO05D010945 1.1e-07 60.1 109 31.2
EL10Ac5g11379 Beta vulgaris HOM05D008595 ORTHO05D010945 1.1e-07 60.1 109 31.2
CSS0017872 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 1.1e-07 60.1 98 29.6
Sopen12g015810 Solanum pennellii HOM05D007930 ORTHO05D007166 1.1e-07 60.1 77 33.8
COL.COLO4_07670 Corchorus olitorius HOM05D001309 ORTHO05D000385 1.4e-07 59.7 93 36.6
Dinv12401 Davidia involucrata HOM05D010146 ORTHO05D000385 1.4e-07 59.7 64 35.9
EL10Ac4g08588 Beta vulgaris HOM05D008595 ORTHO05D010945 1.9e-07 59.3 109 30.3
Sopen04g018890 Solanum pennellii HOM05D007930 ORTHO05D007166 1.9e-07 59.3 95 28.4
EL10Ac1g01792 Beta vulgaris HOM05D008595 ORTHO05D010945 2.4e-07 58.9 109 30.3
Nn7g37991 Nelumbo nucifera HOM05D001309 ORTHO05D000385 2.4e-07 58.9 58 50.0
Nitab4.5_0001199g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.4e-07 58.9 91 31.9
PGSC0003DMG400039419 Solanum tuberosum HOM05D007930 ORTHO05D007166 2.4e-07 58.9 77 32.5
TAR624G1439 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.4e-07 58.9 87 33.3
CSS0007321 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.2e-07 58.5 98 29.6
CSS0011055 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.2e-07 58.5 98 29.6
CSS0011333 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.2e-07 58.5 98 29.6
CSS0042181 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 3.2e-07 58.5 98 29.6
PGSC0003DMG400015737 Solanum tuberosum HOM05D001309 ORTHO05D000385 3.2e-07 58.5 81 33.3
CSS0024690 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 4.2e-07 58.2 98 29.6
EL10Ac5g11348 Beta vulgaris HOM05D008595 ORTHO05D010945 5.4e-07 57.8 109 29.4
Lsat_1_v5_gn_7_13280 Lactuca sativa HOM05D002352 ORTHO05D000385 5.4e-07 57.8 81 34.6
MBI01_g41484_MAGBIO Magnolia biondii HOM05D007906 ORTHO05D010248 5.4e-07 57.8 95 26.3
Nitab4.5_0000111g0060 Nicotiana tabacum HOM05D008455 ORTHO05D009597 5.4e-07 57.8 88 30.7
TAR369G0592 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.4e-07 57.8 87 33.3
Atru.chr6.1842 Acer truncatum HOM05D005012 ORTHO05D005886 7.1e-07 57.4 69 36.2
MBI01_g06508_MAGBIO Magnolia biondii HOM05D007906 ORTHO05D010248 7.1e-07 57.4 95 26.3
Nn3g20064 Nelumbo nucifera HOM05D001309 ORTHO05D000385 7.1e-07 57.4 53 47.2
Nitab4.5_0000781g0070 Nicotiana tabacum HOM05D001309 ORTHO05D000385 7.1e-07 57.4 92 31.5
CANSAT11G0213 Cannabis sativa HOM05D001309 ORTHO05D000385 9.3e-07 57.0 93 30.1
EL10Ac5g10887 Beta vulgaris HOM05D008595 ORTHO05D010945 1.2e-06 56.6 109 30.3
EL10Ac6g14559 Beta vulgaris HOM05D008595 ORTHO05D010945 1.2e-06 56.6 108 28.7
EL10Ac8g19872 Beta vulgaris HOM05D008595 ORTHO05D010945 1.2e-06 56.6 109 29.4
MBI14_g03113_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.2e-06 56.6 95 30.5
PGR083G0420 Punica granatum HOM05D001309 ORTHO05D000385 1.2e-06 56.6 97 32.0
vmacro21926 Vaccinium macrocarpon HOM05D008488 ORTHO05D000385 1.2e-06 56.6 95 32.6
vmacro23420 Vaccinium macrocarpon HOM05D008488 ORTHO05D000385 1.2e-06 56.6 95 32.6
AUR62032223 Chenopodium quinoa HOM05D008576 ORTHO05D003213 1.6e-06 56.2 78 39.7
Solyc01g034040.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 1.6e-06 56.2 92 29.3
GSVIVG01024448001 Vitis vinifera HOM05D001309 ORTHO05D000385 1.6e-06 56.2 67 35.8
EL10Ac5g11498 Beta vulgaris HOM05D008595 ORTHO05D010945 2.1e-06 55.8 109 30.3
EL10Ac8g19368 Beta vulgaris HOM05D008595 ORTHO05D010945 2.1e-06 55.8 108 27.8
Nitab4.5_0005139g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.1e-06 55.8 93 28.0
TAR622G0882 Trochodendron aralioides HOM05D030237 ORTHO05D000385 2.1e-06 55.8 81 33.3
Dinv01725 Davidia involucrata HOM05D010146 ORTHO05D000385 2.7e-06 55.5 48 39.6
Glyma.03G071600 Glycine max HOM05D001309 ORTHO05D000385 2.7e-06 55.5 92 28.3
Nn5g26984 Nelumbo nucifera HOM05D001309 ORTHO05D000385 2.7e-06 55.5 81 34.6
Nitab4.5_0003520g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.7e-06 55.5 92 29.3
Os10g0195100 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 2.7e-06 55.5 90 33.3
Os12g0417000 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 2.7e-06 55.5 90 33.3
Sopen01g007850 Solanum pennellii HOM05D008041 ORTHO05D000385 2.7e-06 55.5 92 29.3
Sopen03g012270 Solanum pennellii HOM05D008041 ORTHO05D000385 2.7e-06 55.5 92 29.3
Sopen04g017170 Solanum pennellii HOM05D008041 ORTHO05D000385 2.7e-06 55.5 92 29.3
Sopen07g025660 Solanum pennellii HOM05D008041 ORTHO05D000385 2.7e-06 55.5 92 29.3
Sopen12g016000 Solanum pennellii HOM05D008041 ORTHO05D000385 2.7e-06 55.5 92 29.3
Solyc06g036805.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 3.5e-06 55.1 92 29.3
TAR626G0801 Trochodendron aralioides HOM05D000619 ORTHO05D002839 3.5e-06 55.1 78 30.8
vmacro03917 Vaccinium macrocarpon HOM05D008488 ORTHO05D000385 3.5e-06 55.1 84 35.7
Prupe.1G266100 Prunus persica HOM05D005012 ORTHO05D000385 4.6e-06 54.7 93 33.3
Prupe.2G006600 Prunus persica HOM05D005012 ORTHO05D000385 4.6e-06 54.7 93 33.3
Sopen12g014810 Solanum pennellii HOM05D008041 ORTHO05D000385 4.6e-06 54.7 92 28.3
vmacro22655 Vaccinium macrocarpon HOM05D008488 ORTHO05D000385 4.6e-06 54.7 93 33.3
CAN.G739.1 Capsicum annuum HOM05D001309 ORTHO05D000385 6.0e-06 54.3 76 35.5
ECA234G0887 Erigeron canadensis HOM05D008488 ORTHO05D000385 6.0e-06 54.3 94 26.6
TAR362G0068 Trochodendron aralioides HOM05D001309 ORTHO05D000385 6.0e-06 54.3 92 32.6


User provided reference genes

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