Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 4.5e-286 987.6 659 100.0
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.1e-231 807.0 552 99.8
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.4e-162 577.4 547 75.0
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 1.8e-162 577.0 545 76.9
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.3e-152 544.3 548 69.7
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 7.2e-151 538.5 546 67.4
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 2.6e-148 530.0 547 73.5
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 4.1e-146 522.7 546 67.9
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 2.2e-144 516.9 546 67.0
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.9e-144 516.5 548 71.4
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 1.2e-140 504.6 552 72.6
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 1.5e-140 504.2 548 67.5
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 3.4e-140 503.1 551 68.4
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 3.7e-139 499.6 550 65.5
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.1e-138 498.0 553 69.3
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 1.8e-138 497.3 548 72.3
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.8e-138 497.3 544 63.6
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 2.7e-137 493.4 548 67.3
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 1.7e-136 490.7 547 71.7
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 2.9e-136 490.0 550 68.0
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 6.5e-136 488.8 573 71.0
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 2.5e-135 486.9 546 65.8
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 7.2e-135 485.3 560 62.9
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 9.4e-135 485.0 554 68.8
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 9.4e-135 485.0 546 63.0
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 2.1e-134 483.8 550 65.6
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 2.1e-134 483.8 587 61.7
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.8e-133 480.7 548 63.9
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 1.8e-133 480.7 545 64.4
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 2.3e-133 480.3 548 64.4
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 3.4e-132 476.5 550 71.5
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 7.5e-132 475.3 549 67.8
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 2.8e-131 473.4 536 63.4
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 6.3e-131 472.2 550 66.4
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 3.1e-130 469.9 567 63.5
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 4.1e-130 469.5 547 62.5
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 5.4e-130 469.2 550 64.4
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.2e-129 468.0 568 60.2
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 3.5e-129 466.5 546 65.0
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 5.9e-129 465.7 545 66.6
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 7.7e-129 465.3 558 64.9
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 3.8e-128 463.0 549 63.9
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 6.6e-128 462.2 548 65.5
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.8e-126 456.8 549 67.2
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 3.6e-126 456.4 549 67.8
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 1.4e-125 454.5 548 67.3
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 4.4e-124 449.5 563 64.7
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 1.3e-123 448.0 553 68.5
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 2.8e-123 446.8 558 61.1
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 4.9e-123 446.0 563 65.0
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 4.9e-123 446.0 546 65.2
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 8.3e-123 445.3 533 66.4
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 8.3e-123 445.3 546 64.8
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 1.8e-122 444.1 543 62.6
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 3.2e-122 443.4 547 65.6
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 4.1e-122 443.0 547 65.1
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 5.4e-122 442.6 550 66.4
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 3.5e-121 439.9 556 60.8
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 3.9e-120 436.4 564 65.2
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 4.3e-119 433.0 559 61.9
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 7.3e-119 432.2 549 65.2
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 1.2e-118 431.4 550 68.0
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 8.0e-118 428.7 551 62.6
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 2.3e-117 427.2 551 59.2
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 2.3e-117 427.2 553 68.5
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 3.4e-116 423.3 548 63.7
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 9.8e-116 421.8 555 65.0
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 9.8e-116 421.8 552 66.7
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.7e-115 421.0 549 64.7
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 7.0e-114 415.6 550 62.7
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 4.6e-113 412.9 551 56.1
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 5.0e-112 409.5 546 60.6
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 1.5e-111 407.9 551 60.1
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 2.5e-111 407.1 551 65.7
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 2.5e-111 407.1 552 64.9
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 4.3e-111 406.4 558 60.4
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.4e-109 401.4 593 49.9
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 5.2e-109 399.4 548 59.5
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.5e-108 397.9 545 65.0
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 8.3e-107 392.1 548 61.1
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 8.3e-107 392.1 545 59.6
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 1.0e-104 385.2 560 62.7
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 1.5e-103 381.3 554 58.1
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.5e-103 380.6 551 60.6
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 7.3e-103 379.0 465 64.7
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 9.5e-103 378.6 548 57.7
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 4.0e-101 373.2 550 61.6
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 2.6e-100 370.5 583 59.7
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 9.9e-100 368.6 549 58.1
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 9.9e-100 368.6 555 60.7
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.9e-99 367.1 577 56.7
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 5.1e-96 356.3 550 60.0
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 2.6e-92 344.0 550 58.0
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 3.5e-89 333.6 559 52.2
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 8.1e-86 322.4 488 55.3
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 3.4e-84 317.0 557 49.9
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 9.9e-84 315.5 551 57.2
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 2.2e-83 314.3 579 49.2
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 2.2e-83 314.3 562 49.8
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 4.9e-83 313.2 562 56.0
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 6.4e-83 312.8 556 57.6
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 8.4e-83 312.4 569 51.0
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 1.1e-82 312.0 566 51.9
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 2.4e-82 310.8 595 49.2
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 4.2e-82 310.1 295 80.7
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 1.3e-80 305.1 576 54.7
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 2.3e-80 304.3 461 59.9
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 1.5e-79 301.6 565 55.9
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 1.6e-78 298.1 575 52.2
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 4.8e-78 296.6 454 60.8
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 1.4e-77 295.0 593 49.2
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 7.6e-76 289.3 553 52.1
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 9.9e-76 288.9 599 49.7
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.2e-74 283.9 492 60.6
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 1.5e-71 275.0 588 52.6
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 2.5e-71 274.2 163 85.9
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 5.8e-68 263.1 163 84.7
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 1.0e-67 262.3 168 81.5
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 1.3e-67 261.9 154 87.0
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 3.9e-64 250.4 496 49.2
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 1.3e-59 235.3 154 79.9
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 3.0e-56 224.2 329 55.3
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 2.2e-54 218.0 165 73.3
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 1.8e-48 198.4 445 51.0
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 2.5e-47 194.5 542 37.1
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 1.4e-45 188.7 287 50.9
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 2.6e-44 184.5 274 56.9
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 1.2e-41 175.6 401 49.6
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 4.2e-34 150.6 121 68.6
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 1.8e-29 135.2 109 69.7
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 7.0e-29 133.3 504 46.6
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 8.5e-27 126.3 71 84.5
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 8.5e-27 126.3 129 60.5
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 4.7e-25 120.6 81 69.1
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 2.3e-24 118.2 245 49.8
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.0e-24 117.9 115 67.0
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 6.8e-24 116.7 105 61.9
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 5.4e-21 107.1 108 61.1
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 1.3e-19 102.4 168 40.5
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.3e-19 102.4 64 84.4
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 8.5e-19 99.8 105 58.1
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 1.4e-16 92.4 103 57.3
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 1.1e-13 82.8 86 58.1
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.8e-13 82.0 74 64.9
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.8e-13 82.0 74 64.9
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 2.4e-13 81.6 58 81.0
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 7.0e-13 80.1 115 60.0
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 4.5e-12 77.4 46 84.8
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 1.2e-09 69.3 77 58.4
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 3.0e-08 64.7 156 32.1
SEGI_38811 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 5.2e-08 63.9 83 48.2
SEGI_30705 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 2.0e-07 62.0 82 50.0
SEGI_10093 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 5.7e-07 60.5 82 47.6


User provided reference genes

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