Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 0.0e+00 1177.5 568 100.0
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 0.0e+00 1176.0 568 99.8
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 0.0e+00 1097.4 568 91.7
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 0.0e+00 1092.0 568 90.7
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 0.0e+00 1090.9 568 90.8
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 0.0e+00 1088.2 568 90.8
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 0.0e+00 1082.4 568 90.8
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 0.0e+00 1081.6 568 91.0
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 0.0e+00 1078.5 568 89.4
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 0.0e+00 1078.5 568 90.3
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 0.0e+00 1076.6 568 90.0
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 3.9e-312 1074.3 564 89.5
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 3.9e-312 1073.9 568 90.0
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 3.9e-312 1073.5 557 91.2
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 7.8e-312 1072.8 571 89.8
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 7.8e-312 1072.8 568 89.6
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.2e-311 1072.4 561 90.6
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 2.7e-311 1071.2 568 88.9
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 3.5e-311 1070.8 568 88.7
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 1.0e-310 1069.3 567 88.5
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 1.7e-310 1068.5 563 89.7
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 3.0e-310 1067.8 561 90.2
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 3.8e-310 1067.4 565 89.2
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 6.5e-310 1066.6 568 89.4
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 4.2e-309 1063.9 563 89.7
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 7.2e-309 1063.1 557 89.9
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 9.5e-309 1062.8 568 88.7
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 2.1e-308 1061.6 563 88.6
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 2.1e-308 1061.6 563 88.6
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 2.1e-308 1061.6 568 88.2
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 4.7e-308 1060.4 563 89.3
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 1.0e-307 1059.3 568 87.9
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 1.0e-307 1059.3 568 87.7
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 1.4e-307 1058.9 568 88.4
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 1.4e-307 1058.9 561 89.8
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 3.0e-307 1057.7 568 87.7
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 5.2e-307 1057.0 568 88.2
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 2.6e-306 1054.7 563 88.5
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 2.2e-305 1051.6 568 87.7
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 2.8e-305 1051.2 568 87.7
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 2.8e-305 1051.2 568 87.7
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.4e-304 1048.9 563 88.3
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.8e-304 1048.5 565 87.3
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 3.1e-304 1047.7 567 86.8
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.1e-304 1047.7 568 86.4
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 4.1e-304 1047.3 567 86.9
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 7.0e-304 1046.6 567 87.8
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 9.2e-304 1046.2 568 86.6
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 1.6e-303 1045.4 567 86.9
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 1.6e-303 1045.4 568 86.8
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 2.0e-303 1045.0 568 88.0
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 7.8e-303 1043.1 561 87.5
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.0e-302 1042.7 567 87.7
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 1.5e-301 1038.9 568 85.7
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 1.5e-301 1038.9 563 87.7
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 2.5e-301 1038.1 568 85.7
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 3.3e-301 1037.7 563 86.9
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 7.3e-301 1036.6 559 87.1
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 2.8e-300 1034.6 563 86.7
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 2.8e-300 1034.6 569 85.6
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 4.7e-300 1033.9 563 86.7
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 4.7e-300 1033.9 565 85.1
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.4e-299 1032.3 565 84.8
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 1.5e-298 1028.9 561 87.2
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 2.9e-297 1024.6 565 84.1
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 8.3e-297 1023.1 568 86.1
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 8.3e-297 1023.1 566 86.0
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.4e-296 1022.3 561 85.2
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 3.2e-296 1021.1 563 86.3
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.6e-295 1018.8 552 86.4
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 3.5e-295 1017.7 550 86.2
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 1.0e-294 1016.1 563 85.3
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.3e-294 1015.8 564 85.6
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 5.0e-294 1013.8 551 86.4
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 2.5e-293 1011.5 565 85.0
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 2.8e-292 1008.1 565 84.8
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 8.0e-292 1006.5 556 85.8
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.1e-291 1006.1 557 86.5
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 2.0e-290 1001.9 568 83.6
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 3.4e-290 1001.1 571 82.7
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 2.2e-289 998.4 564 84.8
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 2.2e-289 998.4 534 87.3
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 2.9e-289 998.0 564 84.4
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 6.4e-289 996.9 564 84.2
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 6.4e-289 996.9 564 84.2
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 6.4e-289 996.9 564 84.2
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 6.4e-289 996.9 564 83.9
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.4e-288 995.0 549 85.4
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 3.2e-288 994.6 564 84.0
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 3.2e-288 994.6 564 84.0
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 4.1e-288 994.2 564 83.7
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 7.0e-288 993.4 564 83.5
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 9.2e-288 993.0 564 83.9
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 1.2e-287 992.6 564 83.3
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 1.2e-287 992.6 564 83.3
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.2e-287 992.6 564 82.8
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 2.7e-287 991.5 564 83.3
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.6e-287 990.7 549 84.9
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.0e-286 989.6 568 82.9
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 1.3e-286 989.2 550 84.5
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 1.3e-286 989.2 570 82.6
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 5.0e-286 987.3 565 82.8
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.1e-285 986.1 564 81.7
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.5e-285 984.9 567 82.5
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 4.3e-285 984.2 564 82.3
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 7.3e-285 983.4 564 82.8
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 2.1e-284 981.9 564 82.4
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 1.1e-283 979.5 564 81.7
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.8e-283 978.8 564 82.4
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 3.1e-283 978.0 564 82.3
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-281 972.6 564 82.1
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 1.3e-281 972.6 564 82.1
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 1.7e-281 972.2 568 80.1
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 4.1e-280 967.6 564 81.7
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 5.4e-280 967.2 562 82.9
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 3.9e-278 961.1 562 82.2
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.5e-277 959.1 564 79.8
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 2.1e-276 955.3 564 80.5
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.8e-276 954.9 564 80.1
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 2.2e-273 945.3 568 78.3
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.1e-271 938.7 563 81.0
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 3.0e-270 934.9 570 77.5
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 8.7e-270 933.3 571 77.2
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.5e-269 931.8 571 76.7
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 7.6e-266 920.2 570 76.8
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 8.4e-265 916.8 568 75.7
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.2e-263 912.9 567 75.3
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 1.3e-262 909.4 564 78.2
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 2.5e-261 905.2 524 81.9
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 4.3e-261 904.4 574 74.0
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.4e-256 889.4 565 74.2
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.9e-256 889.0 565 72.6
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 7.1e-256 887.1 557 79.2
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 1.9e-253 879.0 551 76.0
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 1.1e-248 863.2 569 73.1
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 3.2e-248 861.7 568 73.6
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.2e-247 859.8 566 72.1
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.4e-243 845.5 469 83.2
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 3.8e-241 838.2 564 70.4
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 3.2e-224 781.9 418 88.8
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 6.1e-215 751.1 563 66.8
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.7e-212 743.0 425 81.6
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 1.4e-211 740.0 567 65.4
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 6.1e-191 671.4 373 82.3
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.1e-176 624.0 541 54.0
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 4.4e-173 612.1 417 73.1
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 8.3e-172 607.8 329 83.0
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 8.1e-167 591.3 292 91.1
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 6.4e-164 581.6 488 54.3
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.9e-163 580.1 523 52.2
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 3.4e-149 532.7 418 58.9
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.1e-143 513.5 567 51.0
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.6e-141 506.5 568 50.7
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 1.9e-128 463.8 319 69.3
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.4e-126 457.6 468 53.4
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 1.2e-88 331.6 549 39.0
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 1.3e-87 328.2 210 74.8
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 2.6e-80 303.9 491 35.6
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 2.3e-68 264.2 197 64.5
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 4.3e-67 260.0 197 63.5
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 7.5e-64 249.2 166 69.3
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 6.6e-52 209.5 132 77.3
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 3.7e-47 193.7 133 74.4
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 5.4e-46 189.9 131 75.6
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 9.2e-46 189.1 116 73.3
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 2.3e-44 184.5 166 62.0
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 8.6e-44 182.6 166 62.0
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 1.5e-43 181.8 166 62.0
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 1.6e-42 178.3 166 61.4
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 7.1e-38 162.9 317 32.5
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 2.9e-31 141.0 87 73.6
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 8.4e-31 139.4 95 68.4
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 5.4e-30 136.7 495 25.3
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 6.0e-29 133.3 213 40.8
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 5.1e-28 130.2 76 73.7
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 3.3e-27 127.5 85 64.7
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 6.4e-23 113.2 184 41.8
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 3.7e-18 97.4 103 46.6
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 6.2e-18 96.7 166 40.4
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 9.6e-11 72.8 46 65.2
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 5.5e-06 57.0 40 75.0


User provided reference genes

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