Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR011G0003 Trochodendron aralioides HOM05D008701 ORTHO05D010238 1.9e-132 476.1 290 100.0
TAR626G1447 Trochodendron aralioides HOM05D008701 ORTHO05D010238 2.2e-64 250.0 295 59.7
Nn1g03826 Nelumbo nucifera HOM05D008701 ORTHO05D005382 2.5e-39 166.8 323 46.1
TAR624G0030 Trochodendron aralioides HOM05D008701 ORTHO05D010238 6.0e-33 145.6 106 65.1
TAR624G0398 Trochodendron aralioides HOM05D008701 ORTHO05D010238 6.0e-33 145.6 106 65.1
Dinv08359 Davidia involucrata HOM05D012187 ORTHO05D005382 6.6e-32 142.1 250 40.0
Dinv02575 Davidia involucrata HOM05D008701 ORTHO05D028399 5.8e-28 129.0 288 37.5
TWI39G0991 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 1.3e-27 127.9 290 33.1
Cfa014502 Carpinus fangiana HOM05D008701 ORTHO05D010238 1.9e-26 124.0 296 33.1
Haze_13046 Corylus avellana HOM05D008701 ORTHO05D010238 8.6e-24 115.2 293 33.1
MBI02_g25137_MAGBIO Magnolia biondii HOM05D008701 ORTHO05D010238 8.6e-24 115.2 302 35.8
TWI38G1693 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 8.6e-24 115.2 284 34.2
Sabra16G0271700 Salix brachista HOM05D006433 ORTHO05D005382 1.1e-23 114.8 296 37.8
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 1.1e-23 114.8 296 37.8
Manes.03G117800 Manihot esculenta HOM05D006433 ORTHO05D020383 7.3e-23 112.1 277 31.8
RcHm_v2.0_Chr2g0161211 Rosa chinensis HOM05D008701 ORTHO05D010238 7.3e-23 112.1 309 32.0
FAN02G3791 Fragaria x ananassa HOM05D008701 ORTHO05D010238 9.6e-23 111.7 304 31.9
FAN05G0248 Fragaria x ananassa HOM05D008701 ORTHO05D010238 2.1e-22 110.5 306 32.0
FvH4_6g44330 Fragaria vesca HOM05D008701 ORTHO05D010238 2.8e-22 110.2 298 32.6
FAN14G1396 Fragaria x ananassa HOM05D008701 ORTHO05D010238 2.8e-22 110.2 298 32.6
FAN09G1417 Fragaria x ananassa HOM05D008701 ORTHO05D010238 6.2e-22 109.0 304 31.2
Prupe.3G227700 Prunus persica HOM05D008701 ORTHO05D010238 5.2e-21 105.9 287 32.8
Potri.001G408900 Populus trichocarpa HOM05D006433 ORTHO05D005382 1.2e-20 104.8 289 40.8
Thecc.02G167700 Theobroma cacao HOM05D008701 ORTHO05D010238 3.4e-20 103.2 300 38.3
Rhsim06G0192100 Rhododendron simsii HOM05D012187 ORTHO05D021147 2.2e-19 100.5 293 32.1
COL.COLO4_06754 Corchorus olitorius HOM05D008701 ORTHO05D010238 1.4e-18 97.8 299 35.1
Duzib052G1245 Durio zibethinus HOM05D008701 ORTHO05D010238 5.4e-18 95.9 302 42.7
CiPaw.03G167300 Carya illinoinensis HOM05D008701 ORTHO05D010238 7.1e-18 95.5 215 38.1
RhsimUnG0172600 Rhododendron simsii HOM05D012187 ORTHO05D021147 1.2e-17 94.7 300 31.7
Duzib213G0682 Durio zibethinus HOM05D013385 ORTHO05D005382 2.7e-17 93.6 226 42.0
Manes.15G081600 Manihot esculenta HOM05D006433 ORTHO05D005382 2.7e-17 93.6 258 28.7
Duzib213G0120 Durio zibethinus HOM05D013385 ORTHO05D005382 1.3e-16 91.3 226 42.9
QL08p017181 Quercus lobata HOM05D013385 ORTHO05D005382 2.3e-16 90.5 290 34.1
MD09G1098800 Malus domestica HOM05D008701 ORTHO05D010238 6.6e-16 89.0 291 35.4
Actinidia09967 Actinidia chinensis HOM05D006433 ORTHO05D005382 1.5e-15 87.8 80 58.8
CiPaw.11G178600 Carya illinoinensis HOM05D012187 ORTHO05D020383 5.6e-15 85.9 305 36.4
Gohir.A03G164900 Gossypium hirsutum HOM05D006433 ORTHO05D005382 9.6e-15 85.1 91 47.3
Glyma.09G282600 Glycine max HOM05D006433 ORTHO05D005382 2.1e-14 84.0 103 45.6
Thecc.07G068900 Theobroma cacao HOM05D013385 ORTHO05D005382 2.1e-14 84.0 282 44.3
ATR0618G439 Amborella trichopoda HOM05D006433 ORTHO05D005382 2.8e-14 83.6 86 47.7
Gohir.A01G069700 Gossypium hirsutum HOM05D013385 ORTHO05D005382 2.8e-14 83.6 285 43.9
Potri.013G149300 Populus trichocarpa HOM05D008701 ORTHO05D010238 2.8e-14 83.6 304 29.6
COL.COLO4_03341 Corchorus olitorius HOM05D006433 ORTHO05D005382 3.6e-14 83.2 101 43.6
arahy.Tifrunner.gnm1.ann1.48DCIV Arachis hypogaea HOM05D056638 ORTHO05D005382 4.8e-14 82.8 108 40.7
Haze_11768 Corylus avellana HOM05D006433 ORTHO05D005382 4.8e-14 82.8 80 50.0
CiPaw.05G169900 Carya illinoinensis HOM05D006433 ORTHO05D005382 1.1e-13 81.6 102 41.2
TAR371G0604 Trochodendron aralioides HOM05D006433 ORTHO05D005382 1.1e-13 81.6 117 40.2
Nitab4.5_0005356g0050 Nicotiana tabacum HOM05D006433 ORTHO05D005382 1.4e-13 81.3 102 38.2
Gohir.D02G188100 Gossypium hirsutum HOM05D006433 ORTHO05D005382 2.4e-13 80.5 91 46.2
Gorai.005G210800 Gossypium raimondii HOM05D006433 ORTHO05D005382 2.4e-13 80.5 91 46.2
TWI74G1071 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 2.4e-13 80.5 77 45.5
VMungo0251G3481 Vigna mungo HOM05D006433 ORTHO05D005382 2.4e-13 80.5 81 51.9
Medtr1g037520 Medicago truncatula HOM05D006433 ORTHO05D005382 3.1e-13 80.1 90 50.0
MD17G1087000 Malus domestica HOM05D008701 ORTHO05D010238 4.0e-13 79.7 297 33.0
Gohir.D01G056900 Gossypium hirsutum HOM05D013385 ORTHO05D005382 5.3e-13 79.3 285 41.4
Actinidia05152 Actinidia chinensis HOM05D012187 ORTHO05D021147 6.9e-13 79.0 251 29.9
Duzib132G0833 Durio zibethinus HOM05D008701 ORTHO05D010238 6.9e-13 79.0 302 35.1
Prupe.1G347600 Prunus persica HOM05D006433 ORTHO05D005382 6.9e-13 79.0 81 43.2
Lj2g0006429 Lotus japonicus HOM05D006433 ORTHO05D005382 1.2e-12 78.2 90 47.8
MBI03_g09362_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 1.2e-12 78.2 80 47.5
Nitab4.5_0000771g0160 Nicotiana tabacum HOM05D006433 ORTHO05D005382 1.2e-12 78.2 88 43.2
Cfa008752 Carpinus fangiana HOM05D006433 ORTHO05D005382 1.5e-12 77.8 80 48.8
Ciclev10031878m.g Citrus clementina HOM05D006433 ORTHO05D005382 1.5e-12 77.8 103 39.8
Gorai.002G077300 Gossypium raimondii HOM05D013385 ORTHO05D005382 1.5e-12 77.8 286 43.0
Duzib268G1412 Durio zibethinus HOM05D013385 ORTHO05D005382 2.0e-12 77.4 242 42.1
Potri.019G119000 Populus trichocarpa HOM05D008701 ORTHO05D010238 2.0e-12 77.4 308 26.9
Aqoxy5G03711 Aquilegia oxysepala HOM05D006433 ORTHO05D005382 2.6e-12 77.0 227 48.0
arahy.Tifrunner.gnm1.ann1.0GGX7L Arachis hypogaea HOM05D006433 ORTHO05D005382 2.6e-12 77.0 84 42.9
arahy.Tifrunner.gnm1.ann1.X1AWTF Arachis hypogaea HOM05D006433 ORTHO05D005382 2.6e-12 77.0 93 44.1
Duzib248G0841 Durio zibethinus HOM05D006433 ORTHO05D005382 2.6e-12 77.0 78 42.3
Gohir.D02G184600 Gossypium hirsutum HOM05D008701 ORTHO05D010238 2.6e-12 77.0 296 37.2
Solyc04g009305.1 Solanum lycopersicum HOM05D006433 ORTHO05D005382 2.6e-12 77.0 116 37.9
PGSC0003DMG400032563 Solanum tuberosum HOM05D006433 ORTHO05D005382 2.6e-12 77.0 109 35.8
Dinv22350 Davidia involucrata HOM05D012187 ORTHO05D021147 3.4e-12 76.6 107 46.7
Manes.03G007400 Manihot esculenta HOM05D006433 ORTHO05D005382 3.4e-12 76.6 102 38.2
TPR.G39976 Trifolium pratense HOM05D006433 ORTHO05D005382 3.4e-12 76.6 84 50.0
Haze_09551 Corylus avellana HOM05D023808 ORTHO05D020383 4.5e-12 76.3 256 30.9
Gorai.005G206900 Gossypium raimondii HOM05D008701 ORTHO05D010238 5.8e-12 75.9 296 30.1
Duzib132G0593 Durio zibethinus HOM05D006433 ORTHO05D005382 7.6e-12 75.5 98 38.8
Sopen04g004420 Solanum pennellii HOM05D006433 ORTHO05D005382 7.6e-12 75.5 77 44.2
Psat6g135800 Pisum sativum HOM05D006433 ORTHO05D005382 1.3e-11 74.7 93 40.9
Thecc.02G159800 Theobroma cacao HOM05D006433 ORTHO05D005382 1.3e-11 74.7 90 37.8
TAR629G0072 Trochodendron aralioides HOM05D006433 ORTHO05D005382 1.3e-11 74.7 100 36.0
Eucgr.G02576 Eucalyptus grandis HOM05D006433 ORTHO05D005382 1.7e-11 74.3 70 48.6
Glyma.20G002800 Glycine max HOM05D006433 ORTHO05D005382 1.7e-11 74.3 79 49.4
PGR083G0466 Punica granatum HOM05D012187 ORTHO05D005382 1.7e-11 74.3 290 26.9
SGA_v2.0_scaffold6G03215 Striga asiatica HOM05D006433 ORTHO05D005382 1.7e-11 74.3 84 39.3
Cpa.g.sc12.19 Carica papaya HOM05D013385 ORTHO05D005382 2.2e-11 73.9 246 37.0
Nitab4.5_0002132g0010 Nicotiana tabacum HOM05D006433 ORTHO05D005382 2.2e-11 73.9 97 40.2
MBI06_g16016_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 2.9e-11 73.6 71 50.7
Sabra07G0060600 Salix brachista HOM05D006433 ORTHO05D005382 3.8e-11 73.2 73 43.8
DCAR_009707 Daucus carota HOM05D008701 ORTHO05D010238 6.4e-11 72.4 72 52.8
DCAR_025546 Daucus carota HOM05D006433 ORTHO05D005382 6.4e-11 72.4 90 41.1
FvH4_4g36960 Fragaria vesca HOM05D006433 ORTHO05D005382 6.4e-11 72.4 87 42.5
FAN12G0758 Fragaria x ananassa HOM05D006433 ORTHO05D005382 6.4e-11 72.4 87 42.5
TWI77G0994 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 6.4e-11 72.4 74 47.3
FAN07G1145 Fragaria x ananassa HOM05D006433 ORTHO05D005382 8.4e-11 72.0 87 42.5
PSO541G2888 Papaver somniferum HOM05D008701 ORTHO05D010238 8.4e-11 72.0 321 38.6
Potri.005G092400 Populus trichocarpa HOM05D006433 ORTHO05D005382 8.4e-11 72.0 74 41.9
DCAR_002584 Daucus carota HOM05D006433 ORTHO05D005382 1.1e-10 71.6 78 44.9
ECA246G5167 Erigeron canadensis HOM05D006433 ORTHO05D005382 1.9e-10 70.9 92 41.3
Potri.007G071900 Populus trichocarpa HOM05D006433 ORTHO05D005382 2.4e-10 70.5 72 44.4
Lj6A717T151 Lonicera japonica HOM05D006433 ORTHO05D005382 3.2e-10 70.1 91 39.6
Manes.11G107400 Manihot esculenta HOM05D006433 ORTHO05D005382 3.2e-10 70.1 80 42.5
PGR142G2540 Punica granatum HOM05D006433 ORTHO05D005382 3.2e-10 70.1 75 42.7
Lalb_Chr10g0094961 Lupinus albus HOM05D006433 ORTHO05D005382 5.4e-10 69.3 102 39.2
RcHm_v2.0_Chr4g0446731 Rosa chinensis HOM05D006433 ORTHO05D005382 5.4e-10 69.3 85 42.4
Lsat_1_v5_gn_3_35360 Lactuca sativa HOM05D006433 ORTHO05D005382 7.1e-10 68.9 87 35.6
CiPaw.06G061400 Carya illinoinensis HOM05D006433 ORTHO05D005382 9.3e-10 68.6 69 50.7
Gorai.008G148300 Gossypium raimondii HOM05D006433 ORTHO05D005382 9.3e-10 68.6 79 41.8
FAN17G1725 Fragaria x ananassa HOM05D006433 ORTHO05D005382 1.2e-09 68.2 87 41.4
Cpa.g.sc0.139 Carica papaya HOM05D006433 ORTHO05D005382 1.6e-09 67.8 109 36.7
Ciclev10018089m.g Citrus clementina HOM05D008701 ORTHO05D010238 1.6e-09 67.8 107 41.1
CARHR190370 Cardamine hirsuta HOM05D006433 ORTHO05D005382 2.1e-09 67.4 111 34.2
Cc11_g02400 Coffea canephora HOM05D006433 ORTHO05D005382 2.1e-09 67.4 81 44.4
Gohir.D12G137000 Gossypium hirsutum HOM05D006433 ORTHO05D005382 2.1e-09 67.4 82 41.5
Sabra05G0076500 Salix brachista HOM05D006433 ORTHO05D005382 2.1e-09 67.4 73 41.1
CANSAT56G2818 Cannabis sativa HOM05D006433 ORTHO05D005382 2.7e-09 67.0 82 43.9
Phvul.003G005000 Phaseolus vulgaris HOM05D006433 ORTHO05D005382 2.7e-09 67.0 75 49.3
SalBow2G0414 Salvia bowleyana HOM05D006433 ORTHO05D005382 2.7e-09 67.0 105 41.0
Gohir.A12G133500 Gossypium hirsutum HOM05D006433 ORTHO05D005382 3.5e-09 66.6 81 40.7
QL08p036307 Quercus lobata HOM05D008701 ORTHO05D010238 3.5e-09 66.6 280 27.1
MD13G1005200 Malus domestica HOM05D006433 ORTHO05D005382 4.6e-09 66.2 89 38.2
Manes.12G085400 Manihot esculenta HOM05D008701 ORTHO05D010238 4.6e-09 66.2 299 28.4
DCAR_026896 Daucus carota HOM05D006433 ORTHO05D005382 6.0e-09 65.9 73 43.8
QL03p044176 Quercus lobata HOM05D006433 ORTHO05D005382 6.0e-09 65.9 69 47.8
Actinidia09968 Actinidia chinensis HOM05D012187 ORTHO05D021147 1.3e-08 64.7 104 41.3
Actinidia38416 Actinidia chinensis HOM05D006433 ORTHO05D005382 1.3e-08 64.7 83 38.6
MD16G1002700 Malus domestica HOM05D006433 ORTHO05D005382 1.3e-08 64.7 89 38.2
Actinidia13713 Actinidia chinensis HOM05D006433 ORTHO05D005382 1.8e-08 64.3 81 39.5
Migut.E00694 Erythranthe guttata HOM05D006433 ORTHO05D005382 1.8e-08 64.3 77 45.5
Migut.H01894 Erythranthe guttata HOM05D012187 ORTHO05D005382 1.8e-08 64.3 85 47.1
Lalb_Chr19g0134551 Lupinus albus HOM05D019215 ORTHO05D014071 1.8e-08 64.3 253 28.5
TWI36G1014 Tripterygium wilfordii HOM05D008701 ORTHO05D010238 1.8e-08 64.3 297 29.0
GSVIVG01000448001 Vitis vinifera HOM05D008701 ORTHO05D010238 2.3e-08 63.9 73 47.9
Thhalv10005318m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 3.0e-08 63.5 84 38.1
BolC2t12149H Brassica oleracea HOM05D006433 ORTHO05D005382 3.9e-08 63.2 91 34.1
Peaxi162Scf01216g00009 Petunia axillaris HOM05D023859 ORTHO05D026030 3.9e-08 63.2 102 38.2
C02p61000 Brassica napus HOM05D006433 ORTHO05D005382 5.1e-08 62.8 91 34.1
ClCG11G018580 Citrullus lanatus HOM05D023808 ORTHO05D020383 5.1e-08 62.8 302 24.8
Lj3g0001927 Lotus japonicus HOM05D015882 ORTHO05D014071 5.1e-08 62.8 298 26.8
BcaC03g18036 Brassica carinata HOM05D006433 ORTHO05D005382 6.7e-08 62.4 91 34.1
A10p28440 Brassica napus HOM05D006433 ORTHO05D005382 6.7e-08 62.4 103 33.0
BraA10t44892Z Brassica rapa HOM05D006433 ORTHO05D005382 6.7e-08 62.4 103 33.0
RhsimUnG0257300 Rhododendron simsii HOM05D012187 ORTHO05D021147 6.7e-08 62.4 289 28.7
Rhsim06G0153900 Rhododendron simsii HOM05D038632 ORTHO05D028399 8.7e-08 62.0 300 25.3
Gohir.A03G161300 Gossypium hirsutum HOM05D008701 ORTHO05D010238 1.1e-07 61.6 296 25.7
BcaB07g29865 Brassica carinata HOM05D006433 ORTHO05D005382 1.5e-07 61.2 77 39.0
BraA02t09057Z Brassica rapa HOM05D006433 ORTHO05D005382 1.5e-07 61.2 79 35.4
Sabra13G0120500 Salix brachista HOM05D008701 ORTHO05D010238 1.5e-07 61.2 300 23.7
SEGI_06945 Sequoiadendron giganteum HOM05D020619 ORTHO05D005382 1.9e-07 60.8 98 33.7
A02p41140 Brassica napus HOM05D006433 ORTHO05D005382 2.5e-07 60.5 79 35.4
FAN25G1286 Fragaria x ananassa HOM05D015963 ORTHO05D016946 2.5e-07 60.5 309 25.9
Aa31LG11G2650 Aethionema arabicum HOM05D006433 ORTHO05D005382 3.3e-07 60.1 81 34.6
Oeu063832.1 Olea europaea HOM05D006433 ORTHO05D005382 3.3e-07 60.1 107 32.7
Carub.0006s2095 Capsella rubella HOM05D006433 ORTHO05D005382 4.3e-07 59.7 104 32.7
Ciclev10009473m.g Citrus clementina HOM05D013385 ORTHO05D016946 4.3e-07 59.7 51 47.1
Thhalv10014452m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 5.6e-07 59.3 108 30.6
C09p68700 Brassica napus HOM05D006433 ORTHO05D005382 7.4e-07 58.9 84 34.5
BolC9t59616H Brassica oleracea HOM05D006433 ORTHO05D005382 7.4e-07 58.9 84 34.5
CANSAT11G0906 Cannabis sativa HOM05D012187 ORTHO05D005382 7.4e-07 58.9 287 28.6
CARHR204930 Cardamine hirsuta HOM05D006433 ORTHO05D005382 7.4e-07 58.9 82 35.4
Sc12g0002640 Simmondsia chinensis HOM05D008701 ORTHO05D010238 7.4e-07 58.9 254 22.4
Medtr2g081220 Medicago truncatula HOM05D015882 ORTHO05D014071 9.6e-07 58.5 289 24.9
AT5G08240 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 1.3e-06 58.2 91 34.1
AT5G23160 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 1.3e-06 58.2 87 36.8
PSO063G0432 Papaver somniferum HOM05D061112 ORTHO05D005382 1.3e-06 58.2 109 33.0
Sp6g34710 Schrenkiella parvula HOM05D006433 ORTHO05D005382 1.3e-06 58.2 94 33.0
Prupe.4G192300 Prunus persica HOM05D015963 ORTHO05D016946 1.6e-06 57.8 284 29.2
AL6G18640 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 2.1e-06 57.4 90 32.2
PSO782G4784 Papaver somniferum HOM05D061112 ORTHO05D005382 3.7e-06 56.6 107 31.8
CSS0012441 Camellia sinensis var. sinensis HOM05D038632 ORTHO05D028399 4.8e-06 56.2 246 28.5
AUR62032989 Chenopodium quinoa HOM05D006433 ORTHO05D005382 4.8e-06 56.2 79 34.2
TPR.G1048 Trifolium pratense HOM05D019215 ORTHO05D014071 4.8e-06 56.2 283 27.6
FAN11G2274 Fragaria x ananassa HOM05D015963 ORTHO05D016946 6.2e-06 55.8 275 30.9
HPP92_022555 Vanilla planifolia HOM05D049803 ORTHO05D051563 6.2e-06 55.8 72 40.3
ClCG09G004510 Citrullus lanatus HOM05D027220 ORTHO05D005382 8.1e-06 55.5 93 35.5
MELO3C023593.2 Cucumis melo HOM05D027220 ORTHO05D005382 8.1e-06 55.5 98 30.6


User provided reference genes

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